Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38444 * 119.84490 * 2 1 4 4 C 1.37842 * 120.24484 * 179.76726 * 3 2 1 5 5 C 1.39685 * 119.92180 * 0.48931 * 4 3 2 6 6 C 1.47701 * 120.15331 * 179.76725 * 5 4 3 7 7 O 1.21574 * 119.99687 * 179.72441 * 6 5 4 8 8 N 1.34774 * 120.00225 * 359.72517 * 6 5 4 9 9 C 1.46500 * 120.00269 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.45675 * 35.02185 * 9 8 6 11 11 C 1.53044 * 109.45867 * 275.06712 * 9 8 6 12 12 C 1.53187 * 109.31343 * 178.61032 * 11 9 8 13 13 N 1.46922 * 108.77365 * 54.63696 * 12 11 9 14 14 C 1.36942 * 120.63458 * 126.41218 * 13 12 11 15 15 H 1.08001 * 120.00298 * 207.67418 * 14 13 12 16 16 C 1.38814 * 119.99510 * 27.67494 * 14 13 12 17 17 N 1.31612 * 120.00159 * 17.35496 * 16 14 13 18 18 Si 1.86799 * 119.99811 * 197.35789 * 16 14 13 19 19 H 1.48499 * 109.47251 * 59.99530 * 18 16 14 20 20 H 1.48502 * 109.47290 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47131 * 300.00012 * 18 16 14 22 22 C 1.46929 * 118.73844 * 306.39081 * 13 12 11 23 23 C 1.53032 * 109.46346 * 154.99780 * 9 8 6 24 24 H 1.09004 * 109.49747 * 61.40309 * 23 9 8 25 25 O 1.42900 * 109.49978 * 301.33688 * 23 9 8 26 26 C 1.39759 * 119.68720 * 359.49334 * 5 4 3 27 27 F 1.35109 * 120.11994 * 180.23404 * 26 5 4 28 28 C 1.38382 * 119.84106 * 179.97438 * 2 1 3 29 29 F 1.35102 * 119.96707 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46811 * 270.01890 * 1 2 3 31 31 H 1.08997 * 109.47535 * 30.01957 * 1 2 3 32 32 H 1.09002 * 109.47053 * 150.02407 * 1 2 3 33 33 H 1.08006 * 119.87429 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.03908 * 180.25819 * 4 3 2 35 35 H 0.97003 * 120.00045 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49719 * 298.56881 * 11 9 8 37 37 H 1.09005 * 109.49393 * 58.66144 * 11 9 8 38 38 H 1.08998 * 109.58597 * 174.41805 * 12 11 9 39 39 H 1.08996 * 109.59152 * 294.84911 * 12 11 9 40 40 H 0.97003 * 119.99810 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.58472 * 293.81826 * 22 13 12 42 42 H 1.09002 * 109.58549 * 173.39992 * 22 13 12 43 43 H 0.96695 * 114.00444 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2008 0.0000 4 6 3.5743 1.2105 0.0048 5 6 4.2796 0.0047 -0.0006 6 6 5.7566 0.0091 -0.0006 7 8 6.3675 -1.0420 -0.0003 8 7 6.4270 1.1782 -0.0010 9 6 7.8920 1.1826 -0.0016 10 1 8.2574 0.3420 -0.5915 11 6 8.4028 1.0568 1.4355 12 6 9.9344 1.0268 1.4281 13 7 10.4271 2.2126 0.7142 14 6 11.3335 3.0543 1.3019 15 1 11.3634 4.0968 1.0210 16 6 12.2137 2.5677 2.2586 17 7 12.4232 1.2724 2.3618 18 14 13.1008 3.7511 3.3995 19 1 12.1041 4.5203 4.1871 20 1 13.9776 2.9859 4.3220 21 1 13.9264 4.6882 2.5961 22 6 9.9293 2.4780 -0.6425 23 6 8.3978 2.4917 -0.6118 24 1 8.0531 3.3314 -0.0084 25 8 7.8953 2.6229 -1.9431 26 6 3.5810 -1.2058 -0.0002 27 9 4.2543 -2.3771 -0.0006 28 6 2.1956 -1.2003 0.0005 29 9 1.5162 -2.3681 0.0016 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6514 2.1335 -0.0004 34 1 4.1084 2.1491 0.0090 35 1 5.9396 2.0169 -0.0017 36 1 8.0585 1.9099 2.0200 37 1 8.0230 0.1355 1.8773 38 1 10.3051 1.0372 2.4531 39 1 10.2798 0.1256 0.9215 40 1 13.0380 0.9324 3.0306 41 1 10.2743 1.6951 -1.3179 42 1 10.2967 3.4458 -0.9837 43 1 8.1763 3.4321 -2.3917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090584663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -150.616500 kcal Electronic energy + Delta-G solvation = -29728.833295 eV Core-core repulsion = 25216.586110 eV Total energy + Delta-G solvation = -4512.247185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.60907 -49.69279 -41.45902 -40.02528 -39.12255 -36.97797 -35.88816 -34.26548 -33.56953 -31.85454 -31.37757 -30.24339 -28.70792 -26.92637 -24.51654 -23.95451 -23.82841 -23.30814 -21.71614 -21.25991 -19.56760 -18.87618 -18.49525 -18.19630 -17.94927 -17.58563 -17.39147 -17.09961 -16.68198 -16.25179 -15.85954 -15.78797 -15.66805 -15.62062 -15.27480 -15.00704 -14.92774 -14.50388 -14.30682 -14.14964 -13.89675 -13.64756 -13.34439 -13.28428 -13.00062 -12.80029 -12.72218 -12.68924 -12.66691 -12.39843 -12.14348 -12.08208 -11.89258 -11.45452 -11.13474 -10.99784 -10.57069 -10.23129 -9.92153 -9.89601 -8.77767 -7.90133 -5.37849 -0.60252 -0.20106 1.49279 1.51735 1.57793 1.58730 1.86656 2.41283 2.49790 2.63197 3.10470 3.21909 3.26786 3.34434 3.54605 3.61455 3.68704 3.85560 3.88776 4.04142 4.21670 4.35661 4.38068 4.42560 4.51740 4.62315 4.73316 4.77612 4.82795 4.88644 4.92325 4.95851 5.01118 5.12095 5.14815 5.17709 5.34723 5.37984 5.59380 5.60779 5.65188 6.33380 6.42309 6.90824 7.09041 7.10537 7.77778 8.30568 9.17231 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002503 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.467640 B =11182.831682 C =11488.695376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.055 4.055 3 C -0.091 4.091 4 C -0.046 4.046 5 C -0.166 4.166 6 C 0.550 3.450 7 O -0.578 6.578 8 N -0.688 5.688 9 C 0.169 3.831 10 H 0.052 0.948 11 C -0.129 4.129 12 C 0.180 3.820 13 N -0.603 5.603 14 C -0.265 4.265 15 H 0.080 0.920 16 C -0.053 4.053 17 N -0.939 5.939 18 Si 0.972 3.028 19 H -0.273 1.273 20 H -0.300 1.300 21 H -0.273 1.273 22 C 0.116 3.884 23 C 0.105 3.895 24 H 0.083 0.917 25 O -0.570 6.570 26 C 0.092 3.908 27 F -0.135 7.135 28 C 0.036 3.964 29 F -0.135 7.135 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.198 0.802 34 H 0.177 0.823 35 H 0.416 0.584 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.064 0.936 39 H -0.013 1.013 40 H 0.250 0.750 41 H 0.009 0.991 42 H 0.080 0.920 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.234 7.237 -5.726 28.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.056 4.056 3 C -0.108 4.108 4 C -0.065 4.065 5 C -0.170 4.170 6 C 0.338 3.662 7 O -0.459 6.459 8 N -0.340 5.340 9 C 0.064 3.936 10 H 0.071 0.929 11 C -0.170 4.170 12 C 0.053 3.947 13 N -0.327 5.327 14 C -0.395 4.395 15 H 0.098 0.902 16 C -0.248 4.248 17 N -0.584 5.584 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.227 1.227 21 H -0.198 1.198 22 C -0.011 4.011 23 C 0.044 3.956 24 H 0.100 0.900 25 O -0.378 6.378 26 C 0.071 3.929 27 F -0.113 7.113 28 C 0.016 3.984 29 F -0.113 7.113 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.086 0.914 33 H 0.215 0.785 34 H 0.194 0.806 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.005 0.995 40 H 0.059 0.941 41 H 0.027 0.973 42 H 0.098 0.902 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -26.947 5.788 -5.513 28.107 hybrid contribution 1.540 -0.316 0.514 1.654 sum -25.406 5.472 -4.998 26.465 Atomic orbital electron populations 1.20987 0.86580 1.05297 1.04720 1.20538 0.99306 0.90008 0.95766 1.21498 0.92797 0.98731 0.97783 1.21713 0.95273 0.96122 0.93360 1.19886 0.92607 0.93782 1.10723 1.18404 0.87482 0.84036 0.76318 1.90844 1.70582 1.33039 1.51388 1.45623 1.06602 1.08258 1.73468 1.20703 0.79076 0.97867 0.95943 0.92938 1.22326 0.97641 1.01423 0.95560 1.20534 0.89322 0.87316 0.97506 1.44259 1.48739 1.27696 1.12045 1.19560 1.09975 0.91006 1.18919 0.90203 1.25916 0.98434 0.97156 1.03306 1.70210 1.38462 1.13538 1.36216 0.85273 0.78035 0.78081 0.78632 1.19852 1.22673 1.19801 1.21720 0.92840 0.99813 0.86689 1.22281 0.93659 0.95784 0.83886 0.89971 1.86458 1.75288 1.48603 1.27446 1.18159 0.89212 0.81824 1.03691 1.91547 1.80615 1.45774 1.93368 1.17634 0.86929 0.83586 1.10292 1.91492 1.79183 1.46283 1.94366 0.88566 0.87014 0.91350 0.78497 0.80565 0.74475 0.90484 0.92912 0.91795 0.99452 0.94083 0.97349 0.90206 0.75198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.82 71.24 0.70 -0.01 16 2 C -0.05 -0.68 5.89 -19.78 -0.12 -0.80 16 3 C -0.09 -0.70 9.67 22.22 0.21 -0.49 16 4 C -0.05 -0.59 9.54 22.53 0.21 -0.38 16 5 C -0.17 -4.11 5.88 -20.06 -0.12 -4.23 16 6 C 0.55 18.11 7.73 86.74 0.67 18.78 16 7 O -0.58 -25.53 15.00 -3.95 -0.06 -25.59 16 8 N -0.69 -19.16 4.87 -445.42 -2.17 -21.32 16 9 C 0.17 5.98 2.12 45.02 0.10 6.07 16 10 H 0.05 2.28 7.58 -2.39 -0.02 2.27 16 11 C -0.13 -5.13 5.65 30.67 0.17 -4.96 16 12 C 0.18 8.96 5.31 86.36 0.46 9.42 16 13 N -0.60 -29.35 2.99 -699.11 -2.09 -31.44 16 14 C -0.26 -13.87 9.59 84.03 0.81 -13.07 16 15 H 0.08 3.91 7.89 -2.91 -0.02 3.88 16 16 C -0.05 -2.88 4.91 84.86 0.42 -2.47 16 17 N -0.94 -55.89 11.19 21.65 0.24 -55.65 16 18 Si 0.97 43.52 29.59 68.60 2.03 45.54 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 22 C 0.12 4.51 6.14 86.36 0.53 5.04 16 23 C 0.11 3.19 3.14 30.67 0.10 3.28 16 24 H 0.08 2.18 8.14 -2.38 -0.02 2.17 16 25 O -0.57 -14.31 13.16 -148.98 -1.96 -16.27 16 26 C 0.09 2.62 7.29 22.71 0.17 2.78 16 27 F -0.13 -4.94 15.46 44.97 0.70 -4.25 16 28 C 0.04 0.78 7.24 22.38 0.16 0.94 16 29 F -0.13 -3.22 16.37 44.97 0.74 -2.49 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 0.03 8.08 -2.39 -0.02 0.01 16 32 H 0.07 0.55 7.62 -2.39 -0.02 0.54 16 33 H 0.20 -0.33 8.06 -2.91 -0.02 -0.35 16 34 H 0.18 1.06 6.40 -2.91 -0.02 1.04 16 35 H 0.42 7.80 6.63 -92.71 -0.61 7.18 16 36 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.06 3.56 6.04 -2.39 -0.01 3.55 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 41 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.08 2.78 7.93 -2.39 -0.02 2.76 16 43 H 0.40 6.15 9.08 -74.06 -0.67 5.48 16 Total: -1.00 -81.01 362.35 1.68 -79.33 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -0.21 Total: 12.19 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.47 Total: 19.94 kcal Atomic # 7 Polarization: -104.39 SS G_CDS: -4.02 Total: -108.41 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.02 Total: -41.86 kcal Atomic # 9 Polarization: -8.17 SS G_CDS: 1.43 Total: -6.73 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -81.01 1.68 -79.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.284 kcal (2) G-P(sol) polarization free energy of solvation -81.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds