Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35452 * 117.00056 * 2 1 4 4 N 1.32340 * 119.19836 * 0.02562 * 3 2 1 5 5 C 1.32278 * 120.75902 * 179.72323 * 4 3 2 6 6 C 1.38616 * 119.17363 * 0.52722 * 5 4 3 7 7 C 1.50704 * 120.74113 * 179.73513 * 6 5 4 8 8 N 1.46898 * 109.47041 * 259.72215 * 7 6 5 9 9 C 1.46906 * 110.99888 * 179.97438 * 8 7 6 10 10 C 1.52993 * 109.47378 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47551 * 180.02562 * 10 9 8 12 12 C 1.34777 * 120.00258 * 180.02562 * 11 10 9 13 13 O 1.21279 * 120.00166 * 359.97438 * 12 11 10 14 14 C 1.50696 * 119.99757 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46848 * 179.97438 * 14 12 11 16 16 C 1.76206 * 99.99904 * 179.97438 * 15 14 12 17 17 H 1.07998 * 119.99972 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99695 * 180.02562 * 16 15 14 19 19 N 1.31631 * 120.00104 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99570 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46653 * 90.00074 * 20 18 16 22 22 H 1.48499 * 109.46893 * 209.99664 * 20 18 16 23 23 H 1.48494 * 109.47108 * 330.00037 * 20 18 16 24 24 C 1.38571 * 118.52361 * 359.46138 * 6 5 4 25 25 C 1.50695 * 120.41810 * 180.25374 * 24 6 5 26 26 N 1.32309 * 119.19553 * 179.97438 * 3 2 1 27 27 H 1.09009 * 109.47119 * 59.99259 * 1 2 3 28 28 H 1.08994 * 109.47467 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47128 * 299.99874 * 1 2 3 30 30 H 1.08002 * 120.41649 * 180.28173 * 5 4 3 31 31 H 1.08997 * 109.46924 * 139.72126 * 7 6 5 32 32 H 1.08995 * 109.46962 * 19.72280 * 7 6 5 33 33 H 1.00901 * 111.00121 * 56.04537 * 8 7 6 34 34 H 1.09004 * 109.47040 * 299.99934 * 9 8 7 35 35 H 1.09000 * 109.47033 * 59.99886 * 9 8 7 36 36 H 1.09004 * 109.46862 * 299.99897 * 10 9 8 37 37 H 1.09004 * 109.46998 * 59.99419 * 10 9 8 38 38 H 0.96999 * 119.99694 * 359.97438 * 11 10 9 39 39 H 1.08996 * 109.47390 * 299.99902 * 14 12 11 40 40 H 1.09004 * 109.47662 * 59.99777 * 14 12 11 41 41 H 0.97002 * 119.99547 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.47136 * 89.99943 * 25 24 6 43 43 H 1.09004 * 109.47661 * 210.00487 * 25 24 6 44 44 H 1.09004 * 109.46763 * 329.99934 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2069 0.0000 4 7 1.3078 2.3066 0.0005 5 6 1.8760 3.5011 0.0060 6 6 3.2592 3.5914 0.0001 7 6 3.9435 4.9341 0.0001 8 7 4.3800 5.2612 -1.3638 9 6 5.0524 6.5668 -1.4025 10 6 5.4909 6.8723 -2.8360 11 7 6.1620 8.1740 -2.8746 12 6 6.6360 8.6535 -4.0415 13 8 6.5075 8.0073 -5.0597 14 6 7.3258 9.9928 -4.0811 15 16 7.8448 10.3542 -5.7771 16 6 8.5983 11.9288 -5.5375 17 1 8.6271 12.3693 -4.5519 18 6 9.1540 12.6035 -6.6158 19 7 9.1184 12.0668 -7.8172 20 14 9.9522 14.2732 -6.3619 21 1 11.3931 14.0909 -6.0520 22 1 9.8105 15.0828 -7.5987 23 1 9.2878 14.9730 -5.2333 24 6 3.9988 2.4196 0.0001 25 6 5.5050 2.4680 -0.0004 26 7 3.3661 1.2576 0.0005 27 1 -0.3634 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2698 4.3949 0.0110 31 1 4.8099 4.9003 0.6606 32 1 3.2481 5.6963 0.3517 33 1 3.6037 5.2354 -2.0079 34 1 4.3643 7.3401 -1.0609 35 1 5.9264 6.5448 -0.7516 36 1 6.1789 6.0991 -3.1781 37 1 4.6166 6.8944 -3.4866 38 1 6.2644 8.6911 -2.0603 39 1 6.6381 10.7660 -3.7387 40 1 8.2003 9.9706 -3.4309 41 1 9.5071 12.5382 -8.5706 42 1 5.8685 2.4799 1.0271 43 1 5.8967 1.5901 -0.5143 44 1 5.8393 3.3692 -0.5146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792162.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -20.699705 kcal Electronic energy + Delta-G solvation = -25109.737326 eV Core-core repulsion = 21189.256894 eV Total energy + Delta-G solvation = -3920.480432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.77781 -39.26418 -38.99242 -37.11262 -34.86087 -34.58529 -32.68842 -32.43676 -30.23782 -29.24462 -28.14180 -27.51477 -25.55880 -25.23352 -23.55718 -22.43188 -22.32318 -20.39071 -18.93373 -18.53499 -17.88567 -16.88312 -16.70014 -16.30269 -16.08002 -15.65966 -15.38451 -15.09931 -14.81378 -14.77813 -14.72948 -14.32465 -13.83133 -13.75159 -13.64813 -13.30032 -13.18214 -13.05463 -12.57853 -12.55423 -12.46171 -12.21807 -11.92498 -11.71171 -11.51547 -11.36888 -11.07222 -11.03444 -10.92615 -10.77336 -9.82888 -9.63368 -9.47614 -9.33281 -9.08120 -8.96677 -8.92463 -8.24734 -6.51174 -6.22593 -3.93354 0.48635 0.60138 2.12088 2.92119 3.07808 3.20112 3.21620 3.27786 3.31223 3.55305 3.58528 3.99741 4.03572 4.17371 4.19433 4.25482 4.39832 4.61587 4.74837 4.79367 4.80147 4.96453 5.03175 5.09113 5.12611 5.13109 5.17802 5.18550 5.22183 5.46784 5.51050 5.59111 5.71085 5.83858 5.84929 5.88167 6.11797 6.30088 6.38322 6.57279 6.69054 6.80911 7.58439 7.64408 7.66038 8.34125 8.58672 9.22716 10.84827 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.037094 B = 0.001385 C = 0.001378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.655603 B =20214.032610 C =20321.716695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.291 6.291 3 C 0.502 3.498 4 N -0.574 5.574 5 C 0.194 3.806 6 C -0.235 4.235 7 C 0.116 3.884 8 N -0.682 5.682 9 C 0.049 3.951 10 C 0.122 3.878 11 N -0.739 5.739 12 C 0.532 3.468 13 O -0.516 6.516 14 C -0.153 4.153 15 S -0.060 6.060 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.242 3.758 25 C -0.114 4.114 26 N -0.528 5.528 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.170 0.830 31 H 0.089 0.911 32 H 0.046 0.954 33 H 0.347 0.653 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.398 0.602 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.268 0.732 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.538 -18.462 22.234 32.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 O -0.192 6.192 3 C 0.200 3.800 4 N -0.303 5.303 5 C 0.029 3.971 6 C -0.241 4.241 7 C -0.014 4.014 8 N -0.314 5.314 9 C -0.080 4.080 10 C -0.002 4.002 11 N -0.395 5.395 12 C 0.318 3.682 13 O -0.389 6.389 14 C -0.304 4.304 15 S 0.166 5.834 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.503 5.503 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C 0.096 3.904 25 C -0.171 4.171 26 N -0.255 5.255 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.187 0.813 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.165 0.835 34 H 0.057 0.943 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.556 -21.126 20.372 33.216 hybrid contribution -0.079 3.492 1.830 3.943 sum -15.635 -17.634 22.201 32.378 Atomic orbital electron populations 1.23010 0.75538 1.03650 1.02896 1.86094 1.23462 1.22744 1.86869 1.20726 0.86088 0.84786 0.88416 1.68068 1.41293 0.99118 1.21837 1.22883 0.91848 0.94443 0.87901 1.21189 0.95357 0.97487 1.10023 1.20589 0.98754 0.90943 0.91083 1.60353 1.33406 1.30565 1.07112 1.22119 0.99147 0.89420 0.97305 1.21128 0.97894 0.85716 0.95508 1.45889 1.61533 1.21129 1.10924 1.20299 0.77832 0.87361 0.82697 1.90713 1.55737 1.59360 1.33129 1.23528 1.02610 0.95821 1.08429 1.85422 1.73938 1.24337 0.99676 1.22869 1.43563 1.04617 0.97408 0.90923 1.24991 0.95585 0.98540 0.94423 1.70020 1.42703 1.38232 0.99301 0.86169 0.79460 0.82009 0.77866 1.20253 1.20746 1.19712 1.21485 0.97598 0.85744 0.85614 1.20959 0.86877 1.05564 1.03731 1.67477 1.07619 1.30105 1.20251 0.91789 0.87786 0.91884 0.81296 0.89242 0.93604 0.83496 0.94259 0.89971 0.90613 0.91830 0.76893 0.89240 0.89171 0.92168 0.89619 0.89724 0.87872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.36 101.05 1.05 1.31 16 2 O -0.29 -2.94 10.55 -18.05 -0.19 -3.14 16 3 C 0.50 5.45 8.49 -91.24 -0.77 4.67 16 4 N -0.57 -5.30 9.23 -14.73 -0.14 -5.44 16 5 C 0.19 1.34 10.97 -17.22 -0.19 1.15 16 6 C -0.24 -1.58 5.43 -104.36 -0.57 -2.15 16 7 C 0.12 0.55 4.99 -4.97 -0.02 0.52 16 8 N -0.68 -4.08 5.93 -115.06 -0.68 -4.76 16 9 C 0.05 0.31 5.80 -3.82 -0.02 0.29 16 10 C 0.12 1.26 5.93 -4.05 -0.02 1.23 16 11 N -0.74 -8.99 5.56 -60.30 -0.33 -9.32 16 12 C 0.53 9.60 7.85 -10.99 -0.09 9.52 16 13 O -0.52 -11.57 15.86 5.56 0.09 -11.48 16 14 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 15 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 16 C -0.54 -15.14 9.50 30.94 0.29 -14.84 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 19 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 20 Si 0.92 21.19 29.55 -169.99 -5.02 16.17 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.24 2.07 6.82 -82.26 -0.56 1.51 16 25 C -0.11 -0.72 9.52 36.00 0.34 -0.38 16 26 N -0.53 -5.90 10.40 -10.95 -0.11 -6.01 16 27 H 0.06 0.37 8.09 -51.92 -0.42 -0.05 16 28 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.17 0.63 8.06 -52.49 -0.42 0.21 16 31 H 0.09 0.37 7.38 -51.93 -0.38 -0.01 16 32 H 0.05 0.16 8.04 -51.93 -0.42 -0.25 16 33 H 0.35 2.11 8.72 -39.29 -0.34 1.76 16 34 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.40 3.54 8.47 -40.82 -0.35 3.20 16 39 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 40 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 41 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 42 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.61 6.52 -51.93 -0.34 0.28 16 LS Contribution 392.27 15.07 5.91 5.91 Total: -1.00 -37.08 392.27 -8.84 -45.91 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.44 Total: -0.78 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -0.44 Total: 2.06 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.53 Total: -50.83 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.10 Total: -14.62 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.08 -8.84 -45.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792162.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.214 kcal (2) G-P(sol) polarization free energy of solvation -37.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds