Wall clock time and date at job start Sat Apr 11 2020 05:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35560 * 125.82097 * 2 1 4 4 N 1.35412 * 107.15523 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.43284 * 179.97438 * 4 3 2 6 6 C 1.36658 * 107.12213 * 0.02562 * 4 3 2 7 7 C 1.47411 * 125.86476 * 179.97438 * 6 4 3 8 8 O 1.21603 * 119.99902 * 359.97438 * 7 6 4 9 9 N 1.34775 * 119.99944 * 179.97438 * 7 6 4 10 10 C 1.46507 * 119.99880 * 179.97438 * 9 7 6 11 11 H 1.08995 * 109.47101 * 325.00423 * 10 9 7 12 12 C 1.53004 * 109.46732 * 85.00694 * 10 9 7 13 13 C 1.52999 * 109.47137 * 205.00250 * 10 9 7 14 14 H 1.09004 * 109.47434 * 300.00316 * 13 10 9 15 15 C 1.52997 * 109.47114 * 60.00123 * 13 10 9 16 16 N 1.46498 * 109.46963 * 179.97438 * 13 10 9 17 17 C 1.34777 * 119.99828 * 154.72290 * 16 13 10 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 S 1.81000 * 109.47389 * 180.02562 * 19 17 16 21 21 C 1.76198 * 99.99715 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00516 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99710 * 179.97438 * 21 20 19 24 24 N 1.31634 * 120.00163 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00011 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46661 * 60.00586 * 25 23 21 27 27 H 1.48501 * 109.47391 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47355 * 300.00441 * 25 23 21 29 29 N 1.31620 * 108.27190 * 0.25725 * 6 4 3 30 30 H 1.08999 * 109.47072 * 89.99835 * 1 2 3 31 31 H 1.08997 * 109.47180 * 209.99851 * 1 2 3 32 32 H 1.08998 * 109.47064 * 330.00200 * 1 2 3 33 33 H 1.07999 * 126.42429 * 0.07162 * 3 2 1 34 34 H 0.97000 * 120.00517 * 0.02562 * 9 7 6 35 35 H 1.08994 * 109.47427 * 59.99463 * 12 10 9 36 36 H 1.08999 * 109.46966 * 180.02562 * 12 10 9 37 37 H 1.09010 * 109.46876 * 299.99572 * 12 10 9 38 38 H 1.08997 * 109.47293 * 179.97438 * 15 13 10 39 39 H 1.09003 * 109.47189 * 300.00067 * 15 13 10 40 40 H 1.09009 * 109.47238 * 59.99946 * 15 13 10 41 41 H 0.97001 * 120.00384 * 335.00737 * 16 13 10 42 42 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 43 43 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 44 44 H 0.96991 * 119.99795 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5833 0.6658 -0.0006 5 1 4.3789 1.2208 -0.0011 6 6 3.5465 -0.7003 -0.0015 7 6 4.7175 -1.5958 -0.0029 8 8 5.8402 -1.1286 -0.0038 9 7 4.5437 -2.9323 -0.0032 10 6 5.7074 -3.8223 -0.0052 11 1 6.5066 -3.3741 -0.5955 12 6 6.1907 -4.0329 1.4312 13 6 5.3175 -5.1703 -0.6148 14 1 4.5183 -5.6186 -0.0246 15 6 4.8341 -4.9597 -2.0511 16 7 6.4814 -6.0600 -0.6174 17 6 6.3079 -7.3965 -0.6121 18 8 5.1882 -7.8627 -0.6105 19 6 7.5051 -8.3119 -0.6084 20 16 6.9480 -10.0340 -0.6025 21 6 8.5048 -10.8591 -0.5997 22 1 9.4200 -10.2856 -0.6013 23 6 8.5551 -12.2462 -0.5944 24 7 7.4397 -12.9452 -0.5919 25 14 10.2055 -13.1210 -0.5922 26 1 10.9714 -12.7297 0.6185 27 1 9.9873 -14.5899 -0.5870 28 1 10.9700 -12.7390 -1.8066 29 7 2.2860 -1.0791 -0.0071 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.9711 2.1277 0.0011 34 1 3.6481 -3.3050 -0.0029 35 1 5.3915 -4.4810 2.0215 36 1 7.0568 -4.6947 1.4297 37 1 6.4685 -3.0725 1.8655 38 1 4.5568 -5.9201 -2.4856 39 1 3.9683 -4.2975 -2.0497 40 1 5.6334 -4.5115 -2.6415 41 1 7.3769 -5.6872 -0.6186 42 1 8.1059 -8.1278 -1.4990 43 1 8.1057 -8.1208 0.2809 44 1 7.4748 -13.9145 -0.5886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280189921.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:26 Heat of formation + Delta-G solvation = -25.757367 kcal Electronic energy + Delta-G solvation = -26107.258366 eV Core-core repulsion = 22186.558618 eV Total energy + Delta-G solvation = -3920.699749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.73331 -40.22413 -39.20485 -36.85691 -34.28482 -33.63082 -32.42378 -32.07942 -30.96908 -30.08681 -28.50459 -27.50476 -25.48041 -24.70057 -23.52898 -21.38851 -21.01289 -20.69286 -20.23986 -19.15874 -17.88067 -17.07756 -16.76187 -16.21220 -15.86403 -15.76954 -15.05810 -14.90198 -14.79761 -14.57460 -14.39613 -14.04854 -13.89757 -13.57734 -13.50898 -13.23052 -13.18048 -12.71436 -12.66743 -12.54494 -12.44692 -11.99094 -11.83595 -11.53502 -11.04320 -11.03368 -10.91476 -10.78304 -10.76083 -10.68746 -10.59599 -9.82299 -9.61834 -9.41744 -9.06086 -8.96169 -8.87943 -8.23969 -6.49602 -6.21101 -3.91728 0.89516 2.05816 2.07984 2.86989 2.97122 3.06960 3.15822 3.24105 3.28634 3.34156 3.68824 3.84528 4.20961 4.26419 4.44491 4.58391 4.71958 4.73364 4.92768 5.11321 5.14015 5.27247 5.28604 5.29298 5.32109 5.43719 5.47786 5.53607 5.55915 5.64235 5.69196 5.87127 5.88926 5.99587 6.06125 6.12599 6.13975 6.17760 6.59125 6.63064 6.95754 7.36480 7.59788 7.66044 7.70455 8.35510 8.58543 9.24169 10.86235 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.032220 B = 0.001760 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.818397 B =15902.063144 C =16436.854264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.001 3.999 3 C -0.023 4.023 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.146 3.854 7 C 0.611 3.389 8 O -0.541 6.541 9 N -0.693 5.693 10 C 0.137 3.863 11 H 0.096 0.904 12 C -0.164 4.164 13 C 0.138 3.862 14 H 0.096 0.904 15 C -0.165 4.165 16 N -0.730 5.730 17 C 0.536 3.464 18 O -0.514 6.514 19 C -0.154 4.154 20 S -0.059 6.059 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 N -0.438 5.438 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.187 0.813 34 H 0.415 0.585 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.133 30.883 1.295 32.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.133 4.133 3 C -0.162 4.162 4 N -0.125 5.125 5 H 0.270 0.730 6 C -0.115 4.115 7 C 0.395 3.605 8 O -0.417 6.417 9 N -0.345 5.345 10 C 0.033 3.967 11 H 0.114 0.886 12 C -0.223 4.223 13 C 0.032 3.968 14 H 0.114 0.886 15 C -0.223 4.223 16 N -0.386 5.386 17 C 0.322 3.678 18 O -0.388 6.388 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 N -0.162 5.162 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.204 0.796 34 H 0.252 0.748 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.511 29.359 1.289 31.211 hybrid contribution 3.005 1.222 -0.014 3.244 sum -7.505 30.581 1.274 31.515 Atomic orbital electron populations 1.20087 0.86858 1.03138 1.02661 1.20942 0.97125 0.87867 1.07404 1.22774 0.82932 1.01153 1.09374 1.42880 1.09254 1.07512 1.52873 0.72979 1.22566 0.93740 0.82376 1.12809 1.16380 0.85505 0.81951 0.76663 1.90854 1.23690 1.76027 1.51112 1.45563 1.11072 1.04516 1.73329 1.21251 0.88255 0.89255 0.97976 0.88556 1.22193 1.02281 1.02475 0.95316 1.20991 0.90069 0.88450 0.97286 0.88644 1.22207 1.01276 1.02882 0.95948 1.45932 1.08819 1.05838 1.77969 1.20300 0.91025 0.81633 0.74857 1.90707 1.25499 1.75264 1.47321 1.23537 0.98862 1.03035 1.05004 1.85391 1.11496 0.89599 1.96726 1.22832 0.92650 0.93926 1.59078 0.90968 1.24987 0.97630 0.96399 0.94524 1.70005 1.26490 1.07019 1.46766 0.86229 0.82302 0.78200 0.78796 1.19944 1.20816 1.19952 1.70115 0.99104 1.31072 1.15887 0.91041 0.90722 0.91041 0.79599 0.74838 0.91821 0.90760 0.91923 0.91173 0.91739 0.92428 0.76679 0.89165 0.89157 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.35 10.42 36.01 0.38 0.03 16 2 C 0.00 0.01 7.07 -83.00 -0.59 -0.58 16 3 C -0.02 -0.13 11.91 -16.93 -0.20 -0.33 16 4 N -0.52 -3.56 6.14 -10.78 -0.07 -3.63 16 5 H 0.43 2.03 8.96 -40.82 -0.37 1.66 16 6 C 0.15 1.40 7.95 -154.52 -1.23 0.17 16 7 C 0.61 6.41 7.78 -12.53 -0.10 6.32 16 8 O -0.54 -6.78 16.76 5.27 0.09 -6.70 16 9 N -0.69 -6.43 4.38 -54.88 -0.24 -6.67 16 10 C 0.14 1.30 2.21 -67.93 -0.15 1.15 16 11 H 0.10 0.94 7.58 -51.93 -0.39 0.55 16 12 C -0.16 -1.56 9.33 37.16 0.35 -1.22 16 13 C 0.14 1.53 2.21 -67.93 -0.15 1.38 16 14 H 0.10 1.21 7.57 -51.93 -0.39 0.81 16 15 C -0.16 -1.80 9.33 37.16 0.35 -1.46 16 16 N -0.73 -9.14 4.38 -53.81 -0.24 -9.37 16 17 C 0.54 9.53 7.82 -10.98 -0.09 9.45 16 18 O -0.51 -11.18 15.52 5.55 0.09 -11.09 16 19 C -0.15 -3.02 6.16 36.01 0.22 -2.79 16 20 S -0.06 -1.57 20.57 -107.50 -2.21 -3.79 16 21 C -0.54 -15.20 9.50 30.94 0.29 -14.90 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 25 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 28 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 29 N -0.44 -4.35 10.89 -7.50 -0.08 -4.43 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.19 0.31 8.06 -52.49 -0.42 -0.11 16 34 H 0.41 3.60 8.07 -40.82 -0.33 3.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.68 7.45 -51.93 -0.39 0.29 16 37 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.62 7.44 -51.93 -0.39 0.23 16 40 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 41 H 0.40 3.92 8.39 -40.82 -0.34 3.58 16 42 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 44 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 392.83 15.07 5.92 5.92 Total: -1.00 -36.68 392.83 -8.41 -45.09 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.37 Total: 4.46 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -1.01 Total: -0.77 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: 0.11 Total: -49.46 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: 0.17 Total: -17.79 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.68 -8.41 -45.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280189921.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.336 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds