Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35365 * 126.38946 * 2 1 4 4 C 1.41500 * 105.50387 * 180.02562 * 3 2 1 5 5 C 1.47709 * 126.51722 * 180.02562 * 4 3 2 6 6 O 1.21569 * 120.00120 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99919 * 179.97438 * 5 4 3 8 8 C 1.46503 * 120.00095 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47126 * 180.02562 * 8 7 5 10 10 H 1.09003 * 109.47371 * 305.00268 * 9 8 7 11 11 C 1.53008 * 109.47019 * 65.00017 * 9 8 7 12 12 C 1.52999 * 109.47359 * 185.00138 * 9 8 7 13 13 N 1.46498 * 109.47427 * 175.00027 * 12 9 8 14 14 C 1.34774 * 119.99902 * 179.97438 * 13 12 9 15 15 O 1.21280 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99912 * 179.97438 * 14 13 12 17 17 S 1.81003 * 109.47121 * 180.02562 * 16 14 13 18 18 C 1.76203 * 100.00038 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99773 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99857 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99706 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 120.00276 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46954 * 89.99540 * 22 20 18 24 24 H 1.48491 * 109.47303 * 209.99927 * 22 20 18 25 25 H 1.48496 * 109.46931 * 329.99811 * 22 20 18 26 26 N 1.31807 * 106.96349 * 0.02562 * 4 3 2 27 27 N 1.28474 * 110.07444 * 359.97438 * 26 4 3 28 28 H 0.97001 * 124.88224 * 179.97438 * 27 26 4 29 29 H 1.09000 * 109.46362 * 269.99523 * 1 2 3 30 30 H 1.09002 * 109.47127 * 29.98513 * 1 2 3 31 31 H 1.08994 * 109.47431 * 149.99645 * 1 2 3 32 32 H 1.08001 * 127.24676 * 0.05396 * 3 2 1 33 33 H 0.97004 * 119.99827 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47024 * 300.00147 * 8 7 5 35 35 H 1.08998 * 109.46575 * 60.00390 * 8 7 5 36 36 H 1.08997 * 109.47229 * 60.00116 * 11 9 8 37 37 H 1.09004 * 109.46537 * 179.97438 * 11 9 8 38 38 H 1.08995 * 109.46958 * 299.99833 * 11 9 8 39 39 H 1.09004 * 109.47047 * 295.00373 * 12 9 8 40 40 H 1.08994 * 109.46765 * 54.99691 * 12 9 8 41 41 H 0.96994 * 119.99921 * 0.02562 * 13 12 9 42 42 H 1.09004 * 109.47317 * 300.00292 * 16 14 13 43 43 H 1.09003 * 109.47192 * 60.00403 * 16 14 13 44 44 H 0.96997 * 120.00120 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6322 0.5852 -0.0006 5 6 4.8766 1.3810 -0.0003 6 8 4.8215 2.5954 0.0001 7 7 6.0731 0.7607 -0.0005 8 6 7.3074 1.5499 -0.0007 9 6 8.5141 0.6093 -0.0015 10 1 8.4387 -0.0792 0.8401 11 6 8.5410 -0.1847 -1.3092 12 6 9.7998 1.4291 0.1240 13 7 10.9461 0.5247 0.2433 14 6 12.1908 1.0268 0.3656 15 8 12.3619 2.2274 0.3773 16 6 13.3698 0.0964 0.4889 17 16 14.8908 1.0663 0.6372 18 6 16.0725 -0.2348 0.7619 19 1 15.7472 -1.2642 0.7335 20 6 17.4215 0.0634 0.8955 21 7 18.3042 -0.9086 0.9891 22 14 17.9843 1.8439 0.9438 23 1 17.9940 2.3220 2.3497 24 1 19.3528 1.9461 0.3767 25 1 17.0532 2.6792 0.1433 26 7 3.5420 -0.7297 -0.0015 27 7 2.3080 -1.0872 -0.0009 28 1 1.9965 -2.0058 -0.0018 29 1 -0.3632 -0.0001 1.0277 30 1 -0.3633 0.8901 -0.5136 31 1 -0.3634 -0.8899 -0.5138 32 1 2.0058 2.1259 0.0008 33 1 6.1170 -0.2084 -0.0011 34 1 7.3365 2.1784 -0.8908 35 1 7.3368 2.1785 0.8892 36 1 8.6165 0.5038 -2.1508 37 1 9.4011 -0.8544 -1.3098 38 1 7.6251 -0.7687 -1.3985 39 1 9.9204 2.0537 -0.7612 40 1 9.7423 2.0617 1.0097 41 1 10.8092 -0.4355 0.2336 42 1 13.2493 -0.5274 1.3746 43 1 13.4272 -0.5368 -0.3964 44 1 19.2468 -0.7003 1.0828 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297719821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = -16.016109 kcal Electronic energy + Delta-G solvation = -25200.126364 eV Core-core repulsion = 21279.849028 eV Total energy + Delta-G solvation = -3920.277336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.19645 -39.90898 -39.28201 -37.08332 -34.60311 -33.38380 -32.59854 -32.43102 -32.04844 -29.49764 -27.78366 -27.23531 -25.98204 -25.53212 -23.71325 -21.78103 -21.01518 -20.48657 -20.22557 -18.22527 -17.89001 -17.31394 -16.65041 -16.44424 -16.32567 -15.86284 -15.50207 -15.23478 -14.94202 -14.51115 -14.40312 -14.34786 -13.80489 -13.73755 -13.65178 -13.55153 -13.23089 -12.99412 -12.92912 -12.87780 -12.77803 -12.02231 -11.60336 -11.41157 -11.39316 -11.25450 -11.23201 -10.99702 -10.61265 -10.51159 -9.94235 -9.84879 -9.52760 -9.49259 -9.40409 -9.01363 -8.95486 -8.49014 -6.90845 -6.28268 -3.99924 1.09025 1.57688 2.26261 2.68041 2.86333 2.98919 3.04405 3.33015 3.36575 3.51988 3.67355 3.93412 4.09636 4.34029 4.35683 4.43450 4.46014 4.52976 4.75868 4.83170 4.88730 5.04616 5.06933 5.10985 5.19443 5.25801 5.31526 5.35872 5.38769 5.51430 5.55952 5.65352 5.77726 5.84762 5.86785 5.91552 6.01775 6.05151 6.40612 6.51706 7.04355 7.36114 7.60294 7.84264 7.94779 8.42072 8.49889 9.18085 10.80980 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.001453 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.385218 B =19267.923461 C =19754.280777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.014 3.986 3 C -0.178 4.178 4 C -0.010 4.010 5 C 0.603 3.397 6 O -0.529 6.529 7 N -0.715 5.715 8 C 0.126 3.874 9 C -0.115 4.115 10 H 0.086 0.914 11 C -0.151 4.151 12 C 0.129 3.871 13 N -0.735 5.735 14 C 0.530 3.470 15 O -0.518 6.518 16 C -0.124 4.124 17 S -0.141 6.141 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 N -0.259 5.259 27 N -0.380 5.380 28 H 0.445 0.555 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.407 0.593 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.267 -3.402 -3.162 38.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.171 4.171 5 C 0.387 3.613 6 O -0.403 6.403 7 N -0.367 5.367 8 C 0.002 3.998 9 C -0.134 4.134 10 H 0.104 0.896 11 C -0.209 4.209 12 C 0.004 3.996 13 N -0.390 5.390 14 C 0.316 3.684 15 O -0.393 6.393 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.112 4.112 21 N -0.517 5.517 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.159 1.159 26 N -0.095 5.095 27 N -0.095 5.095 28 H 0.290 0.710 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.242 0.758 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -37.126 -1.454 -3.128 37.286 hybrid contribution -0.389 -1.688 0.075 1.734 sum -37.515 -3.142 -3.053 37.770 Atomic orbital electron populations 1.20381 0.86336 1.04170 1.03586 1.21502 0.95548 0.87072 1.07043 1.21559 0.90395 0.99917 1.08721 1.21917 0.95250 0.89754 1.10205 1.16852 0.81620 0.86398 0.76395 1.90827 1.86773 1.12856 1.49849 1.45810 1.05153 1.10916 1.74869 1.21353 0.81545 0.93490 1.03412 1.21597 0.93877 0.97960 0.99992 0.89589 1.21905 1.02067 1.00327 0.96559 1.21180 0.83394 0.92246 1.02768 1.45923 1.06011 1.10051 1.77058 1.20269 0.83411 0.89346 0.75377 1.90708 1.84981 1.15598 1.47985 1.23279 0.96763 1.01756 1.05686 1.84807 0.96976 1.13261 1.96483 1.22323 0.92915 0.93610 1.58100 0.89407 1.24706 0.95453 0.97920 0.93168 1.69936 1.02218 1.31966 1.47617 0.86735 0.79696 0.85192 0.80246 1.19198 1.19939 1.15903 1.73521 1.01771 1.14987 1.19269 1.43316 1.02916 1.09681 1.53576 0.71013 0.90098 0.89318 0.90973 0.81876 0.75759 0.90540 0.90568 0.91885 0.91844 0.92386 0.91057 0.91129 0.76669 0.88513 0.88475 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.12 10.44 36.01 0.38 0.26 16 2 C 0.01 0.07 7.23 -82.21 -0.59 -0.53 16 3 C -0.18 -1.38 10.73 -39.36 -0.42 -1.80 16 4 C -0.01 -0.10 7.13 -82.77 -0.59 -0.69 16 5 C 0.60 6.45 7.82 -12.39 -0.10 6.35 16 6 O -0.53 -7.35 16.93 5.30 0.09 -7.26 16 7 N -0.72 -5.89 5.28 -61.29 -0.32 -6.21 16 8 C 0.13 1.03 5.06 -4.04 -0.02 1.01 16 9 C -0.12 -0.82 2.46 -90.62 -0.22 -1.04 16 10 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 11 C -0.15 -1.00 8.94 37.16 0.33 -0.67 16 12 C 0.13 1.34 5.06 -4.04 -0.02 1.32 16 13 N -0.74 -8.84 5.28 -60.30 -0.32 -9.16 16 14 C 0.53 9.26 7.85 -10.99 -0.09 9.18 16 15 O -0.52 -11.17 15.86 5.56 0.09 -11.08 16 16 C -0.12 -2.37 6.16 36.00 0.22 -2.15 16 17 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 18 C -0.52 -15.05 10.04 30.94 0.31 -14.74 16 19 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 20 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 21 N -0.88 -26.61 13.97 55.49 0.78 -25.83 16 22 Si 0.86 21.87 27.74 -169.99 -4.72 17.15 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 26 N -0.26 -1.98 11.92 33.42 0.40 -1.58 16 27 N -0.38 -1.80 6.83 33.50 0.23 -1.57 16 28 H 0.45 0.49 8.96 -190.44 -1.71 -1.21 16 29 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 30 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.07 -0.01 8.14 -51.93 -0.42 -0.44 16 32 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 33 H 0.41 2.69 7.38 -40.82 -0.30 2.39 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 7.18 -51.93 -0.37 0.04 16 38 H 0.06 0.33 7.18 -51.93 -0.37 -0.04 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.40 3.64 7.65 -40.82 -0.31 3.33 16 42 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -38.24 390.05 -8.52 -46.76 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -7.72 Total: -0.73 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.91 Total: -0.78 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.76 Total: -44.35 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.72 Total: 17.15 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.24 -8.52 -46.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297719821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.744 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds