Wall clock time and date at job start Sat Apr 11 2020 05:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35000 * 127.27579 * 2 1 4 4 C 1.39478 * 111.68752 * 180.12903 * 3 2 1 5 5 C 1.47691 * 122.10484 * 179.78132 * 4 3 2 6 6 O 1.21573 * 120.00137 * 359.74656 * 5 4 3 7 7 N 1.34782 * 119.99858 * 179.74576 * 5 4 3 8 8 C 1.46503 * 119.99999 * 180.02562 * 7 5 4 9 9 H 1.09008 * 109.46618 * 34.99898 * 8 7 5 10 10 C 1.52999 * 109.47260 * 274.99975 * 8 7 5 11 11 C 1.52996 * 109.47207 * 154.99638 * 8 7 5 12 12 C 1.53007 * 109.47066 * 295.00162 * 11 8 7 13 13 N 1.46898 * 109.46764 * 179.97438 * 12 11 8 14 14 C 1.46906 * 110.99888 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47140 * 180.02562 * 14 13 12 16 16 O 1.21297 * 119.99980 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00037 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99944 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99682 * 179.97438 * 18 17 15 21 21 N 1.31418 * 119.99941 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 120.00523 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47439 * 89.99555 * 22 20 18 24 24 H 1.48496 * 109.47407 * 210.00497 * 22 20 18 25 25 H 1.48507 * 109.46676 * 329.99834 * 22 20 18 26 26 N 1.30608 * 115.79144 * 359.51970 * 4 3 2 27 27 S 1.56149 * 109.79912 * 0.26553 * 26 4 3 28 28 H 1.09000 * 109.46660 * 180.33265 * 1 2 3 29 29 H 1.08995 * 109.47083 * 300.33772 * 1 2 3 30 30 H 1.09002 * 109.46938 * 60.33563 * 1 2 3 31 31 H 1.08001 * 124.15691 * 359.92108 * 3 2 1 32 32 H 0.96998 * 120.00036 * 359.97438 * 7 5 4 33 33 H 1.08999 * 109.46828 * 299.99976 * 10 8 7 34 34 H 1.09002 * 109.46968 * 59.99845 * 10 8 7 35 35 H 1.08998 * 109.47282 * 179.97438 * 10 8 7 36 36 H 1.09004 * 109.47051 * 175.00321 * 11 8 7 37 37 H 1.08997 * 109.47122 * 54.99922 * 11 8 7 38 38 H 1.08995 * 109.47210 * 59.99879 * 12 11 8 39 39 H 1.08997 * 109.46954 * 299.99863 * 12 11 8 40 40 H 1.00902 * 111.00533 * 56.04323 * 13 12 11 41 41 H 1.09000 * 109.47033 * 300.00113 * 14 13 12 42 42 H 1.09001 * 109.46544 * 60.00058 * 14 13 12 43 43 H 0.96996 * 119.99844 * 359.97438 * 17 15 14 44 44 H 0.97002 * 120.00138 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.0742 0.0000 4 6 3.6681 0.6994 -0.0029 5 6 4.7604 1.6935 -0.0083 6 8 4.5013 2.8813 -0.0150 7 7 6.0444 1.2839 -0.0058 8 6 7.1279 2.2700 -0.0106 9 1 6.8297 3.1402 0.5744 10 6 7.4209 2.6988 -1.4497 11 6 8.3848 1.6496 0.6027 12 6 8.1303 1.3350 2.0783 13 7 9.3370 0.7388 2.6669 14 6 9.1294 0.4233 4.0866 15 6 10.3858 -0.1846 4.6550 16 8 11.3583 -0.3401 3.9470 17 7 10.4285 -0.5563 5.9498 18 6 11.5717 -1.1088 6.4670 19 1 12.4379 -1.2465 5.8368 20 6 11.6158 -1.4915 7.8020 21 7 12.7114 -2.0216 8.2977 22 14 10.1180 -1.2526 8.8923 23 1 9.2624 -2.4648 8.8307 24 1 10.5562 -1.0266 10.2930 25 1 9.3444 -0.0763 8.4198 26 7 3.8995 -0.5860 0.0048 27 16 2.5473 -1.3668 0.0087 28 1 -0.3633 -1.0277 0.0060 29 1 -0.3633 0.5190 0.8869 30 1 -0.3633 0.5086 -0.8930 31 1 1.9808 2.0980 -0.0012 32 1 6.2512 0.3362 -0.0001 33 1 7.7190 1.8286 -2.0345 34 1 6.5254 3.1408 -1.8866 35 1 8.2267 3.4328 -1.4532 36 1 9.2145 2.3516 0.5188 37 1 8.6319 0.7299 0.0725 38 1 7.3007 0.6331 2.1623 39 1 7.8833 2.2547 2.6085 40 1 10.1357 1.3429 2.5441 41 1 8.8900 1.3370 4.6306 42 1 8.3063 -0.2845 4.1849 43 1 9.6507 -0.4322 6.5159 44 1 12.7422 -2.2891 9.2296 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482827770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:54 Heat of formation + Delta-G solvation = -35.062255 kcal Electronic energy + Delta-G solvation = -25909.395051 eV Core-core repulsion = 21988.291812 eV Total energy + Delta-G solvation = -3921.103239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83679 -38.99090 -38.46011 -36.93092 -35.09699 -33.92208 -33.77403 -31.79750 -31.60016 -29.38001 -28.68944 -26.45920 -26.03096 -23.94383 -22.39622 -21.69251 -20.87697 -20.45142 -19.36835 -18.73710 -18.33632 -17.62153 -16.60541 -16.09194 -15.91686 -15.60825 -15.12294 -14.88122 -14.67720 -14.33051 -14.20271 -13.91215 -13.76381 -13.63280 -13.43938 -13.41787 -13.15445 -12.99782 -12.74678 -12.45208 -12.31189 -12.14476 -11.73149 -11.62475 -11.39650 -11.31675 -11.29463 -11.14519 -10.96149 -10.59055 -10.26820 -9.97082 -9.94029 -9.56728 -9.44295 -9.16822 -8.58793 -8.18892 -8.13292 -6.30578 -3.81918 0.14740 0.96110 1.35389 1.38487 2.82251 2.92445 3.03052 3.07448 3.15286 3.74733 4.00008 4.10794 4.12685 4.45728 4.66361 4.72109 4.74871 4.77243 4.91400 4.95929 4.96388 5.18634 5.20996 5.25725 5.31197 5.34982 5.43822 5.48126 5.54207 5.59722 5.66580 5.81450 5.87709 5.88178 5.92248 5.95896 6.05648 6.25970 7.09340 7.21190 7.57848 7.59682 7.85082 8.15091 8.60473 8.95494 9.43076 9.83454 10.82532 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011704 B = 0.002115 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.673381 B =13235.041419 C =14922.285690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.250 4.250 3 C -0.143 4.143 4 C 0.053 3.947 5 C 0.593 3.407 6 O -0.531 6.531 7 N -0.704 5.704 8 C 0.142 3.858 9 H 0.091 0.909 10 C -0.162 4.162 11 C -0.126 4.126 12 C 0.058 3.942 13 N -0.669 5.669 14 C 0.048 3.952 15 C 0.450 3.550 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.305 4.305 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 N -0.521 5.521 27 S 0.473 5.527 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.171 0.829 32 H 0.411 0.589 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.027 0.973 40 H 0.350 0.650 41 H 0.044 0.956 42 H 0.086 0.914 43 H 0.370 0.630 44 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.011 5.827 -18.584 33.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.380 4.380 3 C -0.175 4.175 4 C -0.122 4.122 5 C 0.374 3.626 6 O -0.407 6.407 7 N -0.356 5.356 8 C 0.038 3.962 9 H 0.109 0.891 10 C -0.221 4.221 11 C -0.164 4.164 12 C -0.071 4.071 13 N -0.301 5.301 14 C -0.085 4.085 15 C 0.236 3.764 16 O -0.446 6.446 17 N -0.231 5.231 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.195 1.195 26 N -0.356 5.356 27 S 0.629 5.371 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.188 0.812 32 H 0.247 0.753 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.045 0.955 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.104 0.896 43 H 0.203 0.797 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -25.754 3.851 -19.073 32.278 hybrid contribution -1.354 2.417 1.524 3.161 sum -27.108 6.267 -17.549 32.895 Atomic orbital electron populations 1.20220 0.85973 1.03458 1.03657 1.26157 1.03487 1.00205 1.08192 1.21232 0.90330 1.02009 1.03932 1.21064 0.94934 0.89265 1.06898 1.17238 0.81996 0.86761 0.76616 1.90804 1.83554 1.16047 1.50278 1.45991 1.04810 1.11318 1.73470 1.21067 0.86027 0.91920 0.97211 0.89133 1.22163 1.02233 1.01797 0.95869 1.21881 0.96457 1.02343 0.95713 1.21973 0.93670 0.97461 0.94015 1.60073 1.05387 1.50258 1.14385 1.21700 0.98117 0.99726 0.88939 1.19713 0.89487 0.84565 0.82640 1.90563 1.37083 1.58274 1.58705 1.42210 1.14619 1.56916 1.09307 1.19435 0.92444 1.36177 0.95273 0.86270 1.25044 0.97182 0.97251 0.96747 1.69626 1.26409 1.41034 1.15079 0.86665 0.82783 0.78759 0.81142 1.19595 1.20177 1.19550 1.72246 1.29327 1.10628 1.23399 1.80598 0.87382 1.12097 1.57064 0.90744 0.90008 0.90048 0.81203 0.75326 0.92186 0.92111 0.91223 0.89904 0.90013 0.91158 0.95455 0.83021 0.93812 0.89588 0.79699 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.46 36.01 0.38 0.13 16 2 C -0.25 -1.61 6.58 -35.46 -0.23 -1.84 16 3 C -0.14 -1.23 9.92 -40.27 -0.40 -1.63 16 4 C 0.05 0.55 6.66 -84.06 -0.56 -0.01 16 5 C 0.59 6.89 7.78 -12.40 -0.10 6.80 16 6 O -0.53 -7.43 16.32 5.30 0.09 -7.34 16 7 N -0.70 -7.09 4.53 -54.79 -0.25 -7.34 16 8 C 0.14 1.35 2.57 -67.93 -0.17 1.17 16 9 H 0.09 0.96 7.58 -51.92 -0.39 0.57 16 10 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 11 C -0.13 -1.22 5.01 -26.73 -0.13 -1.36 16 12 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16 13 N -0.67 -10.46 6.13 -115.05 -0.70 -11.16 16 14 C 0.05 0.82 6.17 -4.97 -0.03 0.79 16 15 C 0.45 10.42 7.82 -10.99 -0.09 10.34 16 16 O -0.56 -15.36 15.78 5.54 0.09 -15.27 16 17 N -0.59 -14.33 5.09 -10.96 -0.06 -14.39 16 18 C -0.30 -8.73 10.16 -14.93 -0.15 -8.88 16 19 H 0.12 3.89 7.39 -52.48 -0.39 3.51 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.95 13.96 55.50 0.77 -25.18 16 22 Si 0.88 19.60 27.74 -169.99 -4.71 14.88 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 25 H -0.27 -5.50 6.52 56.52 0.37 -5.13 16 26 N -0.52 -5.08 10.71 24.85 0.27 -4.82 16 27 S 0.47 3.17 23.20 -107.50 -2.49 0.67 16 28 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.17 1.37 7.99 -52.49 -0.42 0.95 16 32 H 0.41 3.93 8.07 -40.82 -0.33 3.60 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.85 7.75 -51.93 -0.40 0.45 16 39 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.35 5.60 8.43 -39.29 -0.33 5.27 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 43 H 0.37 7.90 5.76 -40.82 -0.24 7.67 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -35.07 388.71 -8.72 -43.78 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: -6.32 Total: 14.12 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.26 Total: 6.19 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.03 Total: -62.89 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.17 Total: -22.61 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.71 Total: 14.88 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.49 Total: 0.67 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.07 -8.72 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482827770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.722 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds