Wall clock time and date at job start Sat Apr 11 2020 05:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29513 * 121.53124 * 2 1 4 4 S 1.69478 * 107.84346 * 180.02562 * 3 2 1 5 5 C 1.72008 * 96.02741 * 359.80048 * 4 3 2 6 6 C 1.37904 * 105.36389 * 0.32873 * 5 4 3 7 7 C 1.47344 * 123.08281 * 179.88683 * 6 5 4 8 8 O 1.21618 * 119.99491 * 179.70497 * 7 6 5 9 9 N 1.34777 * 120.00421 * 359.71691 * 7 6 5 10 10 C 1.46493 * 120.00076 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47265 * 324.99829 * 10 9 7 12 12 C 1.53011 * 109.47054 * 84.99446 * 10 9 7 13 13 C 1.52997 * 109.47228 * 204.99484 * 10 9 7 14 14 H 1.09000 * 109.47140 * 64.99846 * 13 10 9 15 15 C 1.53006 * 109.47164 * 304.99898 * 13 10 9 16 16 N 1.46902 * 109.47489 * 185.00255 * 13 10 9 17 17 C 1.46892 * 111.00363 * 205.00162 * 16 13 10 18 18 C 1.50698 * 109.47411 * 179.97438 * 17 16 13 19 19 O 1.21286 * 119.99732 * 359.97438 * 18 17 16 20 20 N 1.34784 * 120.00029 * 179.97438 * 18 17 16 21 21 C 1.37088 * 119.99698 * 180.02562 * 20 18 17 22 22 H 1.08006 * 120.00549 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99928 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99691 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00107 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47389 * 59.99638 * 25 23 21 27 27 H 1.48505 * 109.46799 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46922 * 299.99208 * 25 23 21 29 29 H 1.09003 * 109.47046 * 269.98493 * 1 2 3 30 30 H 1.09001 * 109.47259 * 29.98096 * 1 2 3 31 31 H 1.08994 * 109.47181 * 149.97858 * 1 2 3 32 32 H 1.08004 * 127.32197 * 180.24801 * 5 4 3 33 33 H 0.97003 * 119.99561 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.46870 * 299.99890 * 12 10 9 35 35 H 1.09000 * 109.46772 * 60.00080 * 12 10 9 36 36 H 1.08998 * 109.46554 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.47002 * 59.99738 * 15 13 10 38 38 H 1.08993 * 109.46955 * 180.02562 * 15 13 10 39 39 H 1.09000 * 109.47050 * 300.00004 * 15 13 10 40 40 H 1.00903 * 111.00184 * 81.04204 * 16 13 10 41 41 H 1.08999 * 109.46953 * 300.00101 * 17 16 13 42 42 H 1.09001 * 109.47256 * 59.99520 * 17 16 13 43 43 H 0.96997 * 119.99752 * 359.97438 * 20 18 17 44 44 H 0.97000 * 119.99821 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0007 5 6 3.6017 -1.0018 0.0049 6 6 2.2351 -1.1867 -0.0005 7 6 1.6036 -2.5180 -0.0005 8 8 0.3914 -2.6159 0.0000 9 7 2.3693 -3.6271 -0.0009 10 6 1.7413 -4.9507 -0.0004 11 1 0.8254 -4.9181 0.5896 12 6 1.4081 -5.3576 -1.4372 13 6 2.7042 -5.9718 0.6086 14 1 2.8720 -5.7318 1.6585 15 6 4.0360 -5.9287 -0.1435 16 7 2.1242 -7.3171 0.5004 17 6 2.6652 -8.2085 1.5350 18 6 2.0480 -9.5759 1.3930 19 8 1.2368 -9.7869 0.5164 20 7 2.3974 -10.5643 2.2401 21 6 1.8362 -11.8084 2.1105 22 1 1.1138 -11.9964 1.3299 23 6 2.1960 -12.8273 2.9841 24 7 3.0745 -12.5984 3.9342 25 14 1.4319 -14.5226 2.8071 26 1 1.7509 -15.0717 1.4648 27 1 1.9783 -15.4235 3.8537 28 1 -0.0414 -14.4203 2.9628 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3633 -0.8897 -0.5141 32 1 4.3656 -1.7653 0.0101 33 1 3.3361 -3.5490 -0.0015 34 1 0.7221 -4.6302 -1.8710 35 1 2.3240 -5.3902 -2.0273 36 1 0.9405 -6.3422 -1.4367 37 1 4.4664 -4.9305 -0.0633 38 1 4.7218 -6.6565 0.2901 39 1 3.8682 -6.1687 -1.1935 40 1 2.2713 -7.7013 -0.4209 41 1 3.7465 -8.2839 1.4205 42 1 2.4315 -7.8053 2.5204 43 1 3.0464 -10.3956 2.9409 44 1 3.3260 -13.3098 4.5438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570599101.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:42 Heat of formation + Delta-G solvation = -55.298848 kcal Electronic energy + Delta-G solvation = -26513.974117 eV Core-core repulsion = 22591.993353 eV Total energy + Delta-G solvation = -3921.980764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53481 -40.26252 -39.52540 -38.28979 -36.05666 -35.45051 -33.37642 -33.14261 -31.43169 -30.55828 -29.94895 -27.96635 -26.11463 -25.84288 -24.81104 -22.50264 -21.14046 -20.88505 -20.54593 -19.92210 -19.33377 -18.18200 -17.64437 -17.01264 -16.76729 -16.47176 -16.35808 -16.06480 -15.69379 -15.57463 -15.24904 -15.11452 -14.94816 -14.67658 -14.33520 -14.09707 -13.83011 -13.48587 -13.39003 -13.30886 -13.30211 -13.09711 -13.02608 -12.84567 -12.53056 -12.41730 -12.34938 -12.12029 -11.85173 -11.82010 -11.73836 -11.48585 -10.87037 -10.79371 -10.34797 -10.16042 -9.99765 -9.68571 -9.27903 -8.45368 -5.93629 -0.60803 0.35015 0.68903 0.74278 1.40618 1.42694 1.53197 2.01077 2.07941 2.19157 2.31071 3.01110 3.22307 3.46336 3.57111 3.74957 3.87382 3.89393 3.96155 4.25473 4.30345 4.32155 4.40950 4.48696 4.49270 4.57690 4.64533 4.66080 4.70059 4.77426 4.89079 4.99849 5.05385 5.18450 5.26119 5.42261 5.45619 5.51609 5.61379 5.91088 6.12060 6.43835 6.50703 6.62122 7.14467 7.19460 7.58669 8.14212 8.71665 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028822 B = 0.001780 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.254803 B =15727.220850 C =16084.710534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.154 3.846 3 N -0.507 5.507 4 S 0.330 5.670 5 C -0.149 4.149 6 C -0.234 4.234 7 C 0.584 3.416 8 O -0.562 6.562 9 N -0.700 5.700 10 C 0.162 3.838 11 H 0.068 0.932 12 C -0.157 4.157 13 C 0.083 3.917 14 H 0.091 0.909 15 C -0.185 4.185 16 N -0.676 5.676 17 C 0.068 3.932 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.991 3.009 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.231 0.769 33 H 0.412 0.588 34 H 0.044 0.956 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.349 0.651 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.004 25.682 -6.667 28.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.022 4.022 3 N -0.329 5.329 4 S 0.485 5.515 5 C -0.298 4.298 6 C -0.255 4.255 7 C 0.370 3.630 8 O -0.442 6.442 9 N -0.354 5.354 10 C 0.057 3.943 11 H 0.086 0.914 12 C -0.215 4.215 13 C -0.028 4.028 14 H 0.109 0.891 15 C -0.244 4.244 16 N -0.309 5.309 17 C -0.064 4.064 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.199 1.199 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.248 0.752 33 H 0.251 0.749 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.169 0.831 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.028 27.563 -6.730 29.486 hybrid contribution 0.199 -2.676 0.118 2.686 sum 8.227 24.887 -6.612 27.032 Atomic orbital electron populations 1.20868 0.85731 1.04760 1.04250 1.21575 0.99906 0.87150 0.93588 1.76364 1.02357 1.26897 1.27296 1.83998 1.08434 0.95407 1.63612 1.27923 0.98819 1.05692 0.97371 1.20280 0.93249 0.94993 1.17022 1.17506 0.86210 0.83653 0.75667 1.90746 1.15036 1.87000 1.51447 1.45793 1.10596 1.04552 1.74471 1.20665 0.95988 0.80465 0.97152 0.91370 1.22099 1.02033 1.01537 0.95844 1.21725 0.92344 0.87875 1.00807 0.89060 1.22580 0.96753 1.03761 1.01306 1.59935 1.61674 1.01812 1.07459 1.21536 0.97686 0.89410 0.97796 1.20946 0.85466 0.87450 0.83715 1.90498 1.38640 1.83970 1.37853 1.41922 1.39796 1.09451 1.29930 1.19616 1.23369 0.87765 1.15549 0.90382 1.26016 0.97038 1.03266 0.94988 1.69659 1.32652 1.35654 1.18097 0.85011 0.78324 0.76961 0.78185 1.19641 1.19532 1.19926 0.89762 0.90180 0.88412 0.75196 0.74913 0.93649 0.90776 0.91836 0.89392 0.91939 0.91527 0.83080 0.90931 0.87972 0.76941 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.51 71.24 0.68 -1.14 16 2 C 0.15 2.98 6.75 43.14 0.29 3.27 16 3 N -0.51 -9.66 11.97 -51.11 -0.61 -10.27 16 4 S 0.33 3.59 23.69 -56.49 -1.34 2.26 16 5 C -0.15 -1.24 10.79 67.74 0.73 -0.51 16 6 C -0.23 -3.78 5.86 -20.72 -0.12 -3.90 16 7 C 0.58 11.66 7.74 86.64 0.67 12.33 16 8 O -0.56 -15.60 13.41 -4.09 -0.05 -15.65 16 9 N -0.70 -10.34 4.96 -445.88 -2.21 -12.55 16 10 C 0.16 3.29 2.63 45.00 0.12 3.41 16 11 H 0.07 1.86 7.58 -2.39 -0.02 1.84 16 12 C -0.16 -3.33 8.86 71.99 0.64 -2.69 16 13 C 0.08 1.55 2.64 44.92 0.12 1.67 16 14 H 0.09 1.60 7.80 -2.39 -0.02 1.58 16 15 C -0.19 -2.30 8.68 71.98 0.62 -1.68 16 16 N -0.68 -18.96 5.23 -495.59 -2.59 -21.56 16 17 C 0.07 2.13 5.96 85.56 0.51 2.64 16 18 C 0.44 20.07 7.82 87.66 0.69 20.76 16 19 O -0.62 -33.81 15.78 -3.05 -0.05 -33.85 16 20 N -0.57 -28.75 5.29 -306.98 -1.62 -30.38 16 21 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 22 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 23 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 24 N -0.92 -48.99 13.05 21.66 0.28 -48.71 16 25 Si 0.99 42.65 29.55 68.60 2.03 44.67 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 2.17 5.63 -2.39 -0.01 2.15 16 32 H 0.23 -0.22 7.20 -2.91 -0.02 -0.24 16 33 H 0.41 2.99 5.15 -92.71 -0.48 2.51 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.23 6.56 -2.39 -0.02 1.22 16 36 H 0.06 1.61 7.13 -2.39 -0.02 1.59 16 37 H 0.09 0.50 6.29 -2.39 -0.02 0.49 16 38 H 0.06 0.85 7.45 -2.39 -0.02 0.83 16 39 H 0.07 0.87 6.55 -2.39 -0.02 0.85 16 40 H 0.35 10.31 7.39 -89.69 -0.66 9.64 16 41 H 0.07 1.89 7.43 -2.39 -0.02 1.88 16 42 H 0.10 2.91 8.06 -2.39 -0.02 2.90 16 43 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 44 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -74.44 374.70 -0.73 -75.18 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: -0.79 Total: 34.87 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 6.22 Total: 16.00 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -6.75 Total: -123.47 kcal Atomic # 8 Polarization: -49.40 SS G_CDS: -0.10 Total: -49.51 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: 3.59 SS G_CDS: -1.34 Total: 2.26 kcal Total: -74.44 -0.73 -75.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570599101.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.878 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds