Wall clock time and date at job start Sat Apr 11 2020 05:57:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34997 * 127.27292 * 2 1 4 4 C 1.39487 * 111.68703 * 179.97438 * 3 2 1 5 5 C 1.47692 * 122.10789 * 179.97438 * 4 3 2 6 6 O 1.21579 * 119.99788 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99903 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99669 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47051 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.46505 * 64.99900 * 9 8 7 11 11 C 1.52997 * 109.47127 * 185.00029 * 9 8 7 12 12 N 1.46894 * 109.47224 * 305.00575 * 9 8 7 13 13 C 1.46902 * 110.99790 * 298.94884 * 12 9 8 14 14 C 1.46896 * 111.00342 * 175.00014 * 12 9 8 15 15 C 1.50695 * 109.47619 * 189.99958 * 14 12 9 16 16 O 1.21286 * 119.99843 * 359.97438 * 15 14 12 17 17 N 1.34776 * 120.00467 * 180.02562 * 15 14 12 18 18 C 1.37089 * 120.00385 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00257 * 359.97438 * 18 17 15 20 20 C 1.38957 * 120.00040 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99968 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47170 * 90.00302 * 22 20 18 24 24 H 1.48502 * 109.47482 * 210.00611 * 22 20 18 25 25 H 1.48509 * 109.47017 * 330.00300 * 22 20 18 26 26 N 1.30612 * 115.79121 * 0.25397 * 4 3 2 27 27 S 1.56154 * 109.79451 * 359.60641 * 26 4 3 28 28 H 1.09008 * 109.47129 * 89.99881 * 1 2 3 29 29 H 1.09000 * 109.47515 * 209.99422 * 1 2 3 30 30 H 1.08999 * 109.47694 * 329.99942 * 1 2 3 31 31 H 1.08001 * 124.16155 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00429 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.46773 * 60.00404 * 8 7 5 34 34 H 1.09000 * 109.47434 * 300.00313 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 37 37 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 38 38 H 1.09003 * 109.46808 * 60.00632 * 13 12 9 39 39 H 1.09004 * 109.47176 * 180.02562 * 13 12 9 40 40 H 1.08994 * 109.47263 * 300.00333 * 13 12 9 41 41 H 1.09006 * 109.46837 * 310.00141 * 14 12 9 42 42 H 1.09003 * 109.47200 * 69.99229 * 14 12 9 43 43 H 0.97011 * 119.99567 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00137 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3245 1.0743 0.0000 4 6 3.6681 0.6995 0.0006 5 6 4.7603 1.6936 0.0001 6 8 4.5012 2.8814 -0.0003 7 7 6.0443 1.2839 0.0002 8 6 7.1278 2.2701 -0.0008 9 6 8.4759 1.5466 0.0002 10 1 8.5907 0.9911 -0.9306 11 6 9.6048 2.5717 0.1248 12 7 8.5316 0.6163 1.1356 13 6 8.4048 1.3341 2.4110 14 6 9.7638 -0.1828 1.1016 15 6 9.6764 -1.2846 2.1260 16 8 8.6854 -1.3933 2.8167 17 7 10.6999 -2.1487 2.2752 18 6 10.6207 -3.1508 3.2075 19 1 9.7382 -3.2476 3.8226 20 6 11.6757 -4.0420 3.3610 21 7 12.7496 -3.9239 2.6129 22 14 11.5680 -5.4069 4.6317 23 1 10.9647 -6.6139 4.0118 24 1 12.9302 -5.7323 5.1254 25 1 10.7234 -4.9595 5.7683 26 7 3.8995 -0.5860 -0.0042 27 16 2.5472 -1.3668 0.0007 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.9806 2.0981 0.0004 32 1 6.2511 0.3363 0.0002 33 1 7.0508 2.8953 0.8887 34 1 7.0504 2.8940 -0.8912 35 1 10.5653 2.0563 0.1251 36 1 9.4899 3.1272 1.0556 37 1 9.5635 3.2620 -0.7178 38 1 7.4513 1.8615 2.4378 39 1 8.4497 0.6218 3.2349 40 1 9.2197 2.0516 2.5067 41 1 9.8875 -0.6177 0.1098 42 1 10.6176 0.4562 1.3271 43 1 11.4927 -2.0616 1.7230 44 1 13.4862 -4.5458 2.7203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:47 Heat of formation + Delta-G solvation = -21.991675 kcal Electronic energy + Delta-G solvation = -26952.885939 eV Core-core repulsion = 23032.349483 eV Total energy + Delta-G solvation = -3920.536456 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51823 -39.18615 -38.29517 -37.21304 -34.43693 -33.85112 -33.37970 -31.26312 -30.91703 -28.46637 -27.96451 -27.16147 -25.43382 -24.80486 -23.65540 -21.04976 -20.26365 -19.82091 -19.05840 -18.37769 -17.82560 -17.37246 -16.52940 -15.97695 -15.72094 -15.35099 -14.89722 -14.78422 -14.48982 -14.34746 -14.05876 -13.85439 -13.52336 -13.33144 -13.28535 -13.14817 -13.00776 -12.87835 -12.67398 -12.26687 -11.84745 -11.75951 -11.44470 -11.34520 -11.20774 -11.20121 -11.09699 -10.91346 -10.73392 -10.39285 -10.21221 -10.02490 -9.70351 -9.46636 -9.12621 -8.85020 -8.45459 -7.96983 -7.84061 -6.41168 -3.81677 0.42695 1.22392 1.61938 1.67013 3.13064 3.17944 3.23202 3.26480 3.32217 3.91326 3.96815 4.24558 4.38515 4.70058 4.73617 4.92860 4.96728 5.02915 5.12823 5.13677 5.22091 5.26826 5.41425 5.45444 5.52385 5.56295 5.57427 5.64942 5.73455 5.78835 5.90916 5.92633 6.00880 6.16918 6.18075 6.29054 6.46105 6.58941 7.24685 7.36424 7.55801 7.59798 8.07219 8.17629 8.62869 9.19164 9.55539 10.07664 10.76675 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.002719 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.390956 B =10293.590377 C =12377.846849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.256 4.256 3 C -0.141 4.141 4 C 0.053 3.947 5 C 0.589 3.411 6 O -0.542 6.542 7 N -0.693 5.693 8 C 0.130 3.870 9 C 0.063 3.937 10 H 0.089 0.911 11 C -0.186 4.186 12 N -0.511 5.511 13 C 0.017 3.983 14 C 0.045 3.955 15 C 0.444 3.556 16 O -0.576 6.576 17 N -0.565 5.565 18 C -0.297 4.297 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 N -0.510 5.510 27 S 0.470 5.530 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.421 0.579 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.020 0.980 41 H 0.087 0.913 42 H 0.050 0.950 43 H 0.391 0.609 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.258 9.805 -9.215 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.386 4.386 3 C -0.174 4.174 4 C -0.121 4.121 5 C 0.370 3.630 6 O -0.420 6.420 7 N -0.344 5.344 8 C 0.005 3.995 9 C -0.046 4.046 10 H 0.107 0.893 11 C -0.245 4.245 12 N -0.234 5.234 13 C -0.131 4.131 14 C -0.086 4.086 15 C 0.230 3.770 16 O -0.460 6.460 17 N -0.202 5.202 18 C -0.427 4.427 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.195 1.195 26 N -0.344 5.344 27 S 0.625 5.375 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.186 0.814 32 H 0.259 0.741 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.114 0.886 40 H 0.039 0.961 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.531 8.127 -8.777 21.223 hybrid contribution 1.121 1.366 0.331 1.798 sum -16.410 9.493 -8.446 20.754 Atomic orbital electron populations 1.20192 0.86143 1.03671 1.03139 1.26134 1.03368 1.00422 1.08713 1.21227 0.90342 1.01816 1.04001 1.21059 0.94880 0.89305 1.06887 1.17229 0.82072 0.86656 0.77006 1.90778 1.83757 1.16099 1.51346 1.45714 1.04249 1.12185 1.72274 1.21468 0.84806 0.90864 1.02314 1.22048 0.93412 0.93180 0.95966 0.89282 1.22402 0.99356 1.00010 1.02719 1.61806 1.36406 1.22916 1.02279 1.22596 0.99451 0.98150 0.92884 1.21873 0.90976 0.95445 1.00342 1.19735 0.84979 0.85133 0.87192 1.90493 1.31924 1.74758 1.48800 1.41865 1.16576 1.26791 1.34973 1.19682 1.03496 1.05503 1.13989 0.87968 1.25250 0.95108 0.99129 0.98495 1.69607 1.06443 1.38418 1.39946 0.85872 0.77384 0.80649 0.80467 1.20407 1.20971 1.19451 1.72333 1.28867 1.10627 1.22601 1.80595 0.87467 1.12171 1.57254 0.90253 0.90668 0.90319 0.81356 0.74093 0.91086 0.90937 0.91601 0.91777 0.91869 0.92171 0.88638 0.96138 0.89477 0.93174 0.77545 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.46 36.00 0.38 -0.01 16 2 C -0.26 -2.29 6.58 -35.46 -0.23 -2.52 16 3 C -0.14 -1.59 9.93 -40.27 -0.40 -1.99 16 4 C 0.05 0.73 6.66 -84.06 -0.56 0.17 16 5 C 0.59 8.85 7.81 -12.40 -0.10 8.75 16 6 O -0.54 -9.10 16.66 5.30 0.09 -9.01 16 7 N -0.69 -9.79 5.38 -61.29 -0.33 -10.12 16 8 C 0.13 1.61 4.69 -4.04 -0.02 1.59 16 9 C 0.06 0.77 2.50 -67.71 -0.17 0.60 16 10 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 11 C -0.19 -1.95 8.50 37.16 0.32 -1.63 16 12 N -0.51 -8.10 3.93 -236.33 -0.93 -9.03 16 13 C 0.02 0.27 8.45 60.07 0.51 0.78 16 14 C 0.04 0.78 4.89 -4.98 -0.02 0.75 16 15 C 0.44 10.31 7.47 -10.99 -0.08 10.23 16 16 O -0.58 -15.29 13.91 5.55 0.08 -15.22 16 17 N -0.57 -14.20 5.29 -10.97 -0.06 -14.25 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 19 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.52 13.05 55.50 0.72 -23.79 16 22 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 N -0.51 -6.95 10.71 24.85 0.27 -6.68 16 27 S 0.47 4.62 23.20 -107.50 -2.49 2.13 16 28 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.17 1.73 7.99 -52.49 -0.42 1.31 16 32 H 0.42 6.35 7.60 -40.82 -0.31 6.04 16 33 H 0.07 0.93 6.70 -51.93 -0.35 0.58 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.71 6.75 -51.93 -0.35 0.36 16 36 H 0.06 0.69 6.39 -51.93 -0.33 0.36 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.93 6.44 -51.93 -0.33 0.60 16 39 H 0.10 1.92 5.82 -51.93 -0.30 1.61 16 40 H 0.02 0.30 6.28 -51.93 -0.33 -0.03 16 41 H 0.09 1.36 8.00 -51.93 -0.42 0.95 16 42 H 0.05 0.80 6.94 -51.93 -0.36 0.44 16 43 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 44 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 377.15 15.07 5.68 5.68 Total: -1.00 -32.97 377.15 -8.48 -41.46 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -5.86 Total: 13.98 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.63 Total: 8.82 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.33 Total: -63.89 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: 0.17 Total: -24.23 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -2.49 Total: 2.13 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.97 -8.48 -41.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.464 kcal (2) G-P(sol) polarization free energy of solvation -32.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds