Wall clock time and date at job start Sat Apr 11 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34997 * 127.27292 * 2 1 4 4 C 1.39487 * 111.68703 * 179.97438 * 3 2 1 5 5 C 1.47692 * 122.10789 * 179.97438 * 4 3 2 6 6 O 1.21579 * 119.99788 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99903 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99669 * 179.97438 * 7 5 4 9 9 C 1.53006 * 109.47051 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.46505 * 64.99900 * 9 8 7 11 11 C 1.52997 * 109.47127 * 185.00029 * 9 8 7 12 12 N 1.46894 * 109.47224 * 305.00575 * 9 8 7 13 13 C 1.46902 * 110.99790 * 298.94884 * 12 9 8 14 14 C 1.46896 * 111.00342 * 175.00014 * 12 9 8 15 15 C 1.50695 * 109.47619 * 189.99958 * 14 12 9 16 16 O 1.21286 * 119.99843 * 359.97438 * 15 14 12 17 17 N 1.34776 * 120.00467 * 180.02562 * 15 14 12 18 18 C 1.37089 * 120.00385 * 179.97438 * 17 15 14 19 19 H 1.08003 * 120.00257 * 359.97438 * 18 17 15 20 20 C 1.38957 * 120.00040 * 179.97438 * 18 17 15 21 21 N 1.31405 * 119.99968 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99986 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47170 * 90.00302 * 22 20 18 24 24 H 1.48502 * 109.47482 * 210.00611 * 22 20 18 25 25 H 1.48509 * 109.47017 * 330.00300 * 22 20 18 26 26 N 1.30612 * 115.79121 * 0.25397 * 4 3 2 27 27 S 1.56154 * 109.79451 * 359.60641 * 26 4 3 28 28 H 1.09008 * 109.47129 * 89.99881 * 1 2 3 29 29 H 1.09000 * 109.47515 * 209.99422 * 1 2 3 30 30 H 1.08999 * 109.47694 * 329.99942 * 1 2 3 31 31 H 1.08001 * 124.16155 * 0.02562 * 3 2 1 32 32 H 0.96996 * 120.00429 * 0.02562 * 7 5 4 33 33 H 1.08996 * 109.46773 * 60.00404 * 8 7 5 34 34 H 1.09000 * 109.47434 * 300.00313 * 8 7 5 35 35 H 1.09002 * 109.47153 * 180.02562 * 11 9 8 36 36 H 1.09001 * 109.46832 * 60.00321 * 11 9 8 37 37 H 1.09004 * 109.47261 * 300.00303 * 11 9 8 38 38 H 1.09003 * 109.46808 * 60.00632 * 13 12 9 39 39 H 1.09004 * 109.47176 * 180.02562 * 13 12 9 40 40 H 1.08994 * 109.47263 * 300.00333 * 13 12 9 41 41 H 1.09006 * 109.46837 * 310.00141 * 14 12 9 42 42 H 1.09003 * 109.47200 * 69.99229 * 14 12 9 43 43 H 0.97011 * 119.99567 * 359.97438 * 17 15 14 44 44 H 0.96997 * 120.00137 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3245 1.0743 0.0000 4 6 3.6681 0.6995 0.0006 5 6 4.7603 1.6936 0.0001 6 8 4.5012 2.8814 -0.0003 7 7 6.0443 1.2839 0.0002 8 6 7.1278 2.2701 -0.0008 9 6 8.4759 1.5466 0.0002 10 1 8.5907 0.9911 -0.9306 11 6 9.6048 2.5717 0.1248 12 7 8.5316 0.6163 1.1356 13 6 8.4048 1.3341 2.4110 14 6 9.7638 -0.1828 1.1016 15 6 9.6764 -1.2846 2.1260 16 8 8.6854 -1.3933 2.8167 17 7 10.6999 -2.1487 2.2752 18 6 10.6207 -3.1508 3.2075 19 1 9.7382 -3.2476 3.8226 20 6 11.6757 -4.0420 3.3610 21 7 12.7496 -3.9239 2.6129 22 14 11.5680 -5.4069 4.6317 23 1 10.9647 -6.6139 4.0118 24 1 12.9302 -5.7323 5.1254 25 1 10.7234 -4.9595 5.7683 26 7 3.8995 -0.5860 -0.0042 27 16 2.5472 -1.3668 0.0007 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3634 0.8899 0.5138 31 1 1.9806 2.0981 0.0004 32 1 6.2511 0.3363 0.0002 33 1 7.0508 2.8953 0.8887 34 1 7.0504 2.8940 -0.8912 35 1 10.5653 2.0563 0.1251 36 1 9.4899 3.1272 1.0556 37 1 9.5635 3.2620 -0.7178 38 1 7.4513 1.8615 2.4378 39 1 8.4497 0.6218 3.2349 40 1 9.2197 2.0516 2.5067 41 1 9.8875 -0.6177 0.1098 42 1 10.6176 0.4562 1.3271 43 1 11.4927 -2.0616 1.7230 44 1 13.4862 -4.5458 2.7203 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709409.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:46 Heat of formation + Delta-G solvation = -47.339602 kcal Electronic energy + Delta-G solvation = -26953.985108 eV Core-core repulsion = 23032.349483 eV Total energy + Delta-G solvation = -3921.635625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53461 -40.58748 -39.54180 -38.63724 -36.00308 -35.41129 -34.16825 -33.26252 -32.07393 -29.40041 -29.21436 -28.13240 -27.02713 -25.94798 -25.05495 -21.93009 -21.46340 -21.00938 -20.62128 -19.80239 -19.25718 -18.40973 -17.89872 -17.16560 -16.96264 -16.59451 -16.47886 -16.27700 -15.80362 -15.64000 -15.32654 -15.03666 -14.84299 -14.58378 -14.20968 -14.02694 -13.94711 -13.71821 -13.64826 -13.48309 -13.43590 -13.09307 -12.91506 -12.82389 -12.45587 -12.39142 -12.30442 -12.26995 -12.12545 -11.84847 -11.77851 -11.43809 -11.10831 -10.47551 -10.26889 -10.19419 -9.98090 -9.73651 -9.17961 -8.45428 -5.93388 -0.45097 0.45019 0.69845 0.80477 1.37668 1.41124 1.53533 2.08382 2.08904 2.17333 2.28818 2.75379 3.21782 3.43427 3.62073 3.69662 3.85672 4.04791 4.20618 4.24066 4.27929 4.30892 4.33569 4.53052 4.54845 4.59924 4.64249 4.70599 4.73548 4.77842 4.84425 4.90660 4.99647 5.16781 5.18834 5.26546 5.29629 5.41925 5.42773 5.87684 6.06611 6.19058 6.45697 6.62968 7.04685 7.15273 7.59271 8.15829 8.72043 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.002719 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.390956 B =10293.590377 C =12377.846849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.234 4.234 3 C -0.162 4.162 4 C 0.032 3.968 5 C 0.584 3.416 6 O -0.568 6.568 7 N -0.693 5.693 8 C 0.130 3.870 9 C 0.070 3.930 10 H 0.102 0.898 11 C -0.180 4.180 12 N -0.526 5.526 13 C 0.027 3.973 14 C 0.059 3.941 15 C 0.442 3.558 16 O -0.613 6.613 17 N -0.576 5.576 18 C -0.329 4.329 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.990 3.010 23 H -0.271 1.271 24 H -0.271 1.271 25 H -0.274 1.274 26 N -0.554 5.554 27 S 0.509 5.491 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.173 0.827 32 H 0.416 0.584 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.110 0.890 42 H 0.072 0.928 43 H 0.396 0.604 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.926 9.865 -10.230 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.365 4.365 3 C -0.193 4.193 4 C -0.141 4.141 5 C 0.366 3.634 6 O -0.448 6.448 7 N -0.343 5.343 8 C 0.006 3.994 9 C -0.039 4.039 10 H 0.120 0.880 11 C -0.239 4.239 12 N -0.251 5.251 13 C -0.121 4.121 14 C -0.072 4.072 15 C 0.229 3.771 16 O -0.499 6.499 17 N -0.214 5.214 18 C -0.459 4.459 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.199 1.199 26 N -0.390 5.390 27 S 0.664 5.336 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.191 0.809 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.229 0.771 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.177 8.207 -9.817 22.229 hybrid contribution 1.207 1.334 0.620 1.903 sum -16.970 9.541 -9.197 21.531 Atomic orbital electron populations 1.20424 0.83247 1.05068 1.04707 1.26575 1.05006 0.99113 1.05845 1.21313 0.89801 1.02739 1.05472 1.21080 0.95373 0.89212 1.08415 1.17525 0.82638 0.86726 0.76496 1.90742 1.84193 1.17074 1.52765 1.45794 1.04551 1.12134 1.71804 1.21567 0.84471 0.90640 1.02680 1.22096 0.93939 0.93124 0.94703 0.87973 1.22357 0.98243 0.99746 1.03586 1.61712 1.35923 1.24300 1.03128 1.22380 1.00453 0.97258 0.91964 1.21728 0.92402 0.93934 0.99129 1.20810 0.83605 0.85417 0.87249 1.90477 1.33259 1.75787 1.50403 1.41929 1.17365 1.27044 1.35016 1.19612 1.03408 1.07494 1.15359 0.90523 1.25995 0.94476 1.00757 1.00079 1.69665 1.06754 1.39125 1.40685 0.84969 0.77785 0.77883 0.77953 1.19664 1.19573 1.19906 1.72115 1.31816 1.10953 1.24107 1.80332 0.86144 1.11395 1.55732 0.88408 0.88851 0.89327 0.80938 0.74671 0.91854 0.89350 0.91459 0.92148 0.89541 0.91804 0.92837 0.94241 0.87160 0.91069 0.77067 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 71.23 0.75 0.15 16 2 C -0.23 -3.82 6.58 24.94 0.16 -3.66 16 3 C -0.16 -3.57 9.93 21.83 0.22 -3.36 16 4 C 0.03 0.90 6.66 42.13 0.28 1.18 16 5 C 0.58 17.93 7.81 86.74 0.68 18.60 16 6 O -0.57 -19.41 16.66 -3.97 -0.07 -19.48 16 7 N -0.69 -19.73 5.38 -466.10 -2.51 -22.24 16 8 C 0.13 3.12 4.69 86.38 0.40 3.52 16 9 C 0.07 1.57 2.50 44.92 0.11 1.69 16 10 H 0.10 2.09 8.03 -2.39 -0.02 2.07 16 11 C -0.18 -3.28 8.50 71.98 0.61 -2.67 16 12 N -0.53 -16.36 3.93 -901.63 -3.54 -19.90 16 13 C 0.03 0.90 8.45 127.69 1.08 1.98 16 14 C 0.06 1.97 4.89 85.56 0.42 2.39 16 15 C 0.44 20.85 7.47 87.66 0.66 21.51 16 16 O -0.61 -33.79 13.91 -3.05 -0.04 -33.83 16 17 N -0.58 -29.46 5.29 -306.99 -1.62 -31.08 16 18 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 22 Si 0.99 43.22 29.55 68.60 2.03 45.25 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 N -0.55 -15.29 10.71 -75.28 -0.81 -16.09 16 27 S 0.51 9.55 23.20 -56.49 -1.31 8.24 16 28 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.17 3.54 7.99 -2.91 -0.02 3.52 16 32 H 0.42 12.76 7.60 -92.71 -0.70 12.06 16 33 H 0.06 1.63 6.70 -2.39 -0.02 1.61 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 1.24 6.75 -2.39 -0.02 1.22 16 36 H 0.06 1.16 6.39 -2.39 -0.02 1.14 16 37 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.06 2.01 6.44 -2.39 -0.02 1.99 16 39 H 0.05 2.22 5.82 -2.38 -0.01 2.21 16 40 H 0.04 1.12 6.28 -2.39 -0.02 1.10 16 41 H 0.11 3.22 8.00 -2.38 -0.02 3.20 16 42 H 0.07 2.12 6.94 -2.39 -0.02 2.10 16 43 H 0.40 19.19 7.90 -92.70 -0.73 18.46 16 44 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -73.69 377.15 -1.32 -75.00 By element: Atomic # 1 Polarization: 40.86 SS G_CDS: -0.37 Total: 40.49 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: 6.65 Total: 23.15 kcal Atomic # 7 Polarization: -130.61 SS G_CDS: -8.20 Total: -138.81 kcal Atomic # 8 Polarization: -53.20 SS G_CDS: -0.11 Total: -53.31 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 9.55 SS G_CDS: -1.31 Total: 8.24 kcal Total: -73.69 -1.32 -75.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709409.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.665 kcal (2) G-P(sol) polarization free energy of solvation -73.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds