Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34996 * 127.27386 * 2 1 4 4 C 1.39491 * 111.68744 * 179.82511 * 3 2 1 5 5 C 1.47690 * 122.10810 * 180.18769 * 4 3 2 6 6 O 1.21577 * 119.99751 * 0.29388 * 5 4 3 7 7 N 1.34777 * 119.99941 * 180.28851 * 5 4 3 8 8 C 1.46497 * 119.99608 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46888 * 175.19005 * 8 7 5 10 10 H 1.09000 * 109.47123 * 295.31483 * 9 8 7 11 11 C 1.53007 * 109.47109 * 175.31894 * 9 8 7 12 12 N 1.46892 * 109.47269 * 55.31696 * 9 8 7 13 13 C 1.46898 * 111.00182 * 192.49310 * 12 9 8 14 14 C 1.46908 * 111.00199 * 68.54115 * 12 9 8 15 15 C 1.50692 * 109.47233 * 190.00086 * 14 12 9 16 16 O 1.21291 * 120.00481 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99976 * 179.97438 * 15 14 12 18 18 C 1.37103 * 120.00217 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00168 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99760 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47024 * 60.00258 * 22 20 18 24 24 H 1.48502 * 109.47336 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47180 * 300.00458 * 22 20 18 26 26 N 1.30607 * 115.78854 * 0.48671 * 4 3 2 27 27 S 1.56147 * 109.79857 * 359.72756 * 26 4 3 28 28 H 1.09002 * 109.47033 * 179.71209 * 1 2 3 29 29 H 1.09000 * 109.47442 * 59.71565 * 1 2 3 30 30 H 1.08997 * 109.47320 * 299.71079 * 1 2 3 31 31 H 1.08002 * 124.16401 * 359.95943 * 3 2 1 32 32 H 0.96990 * 119.99996 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47574 * 295.18845 * 8 7 5 34 34 H 1.08999 * 109.47579 * 55.19163 * 8 7 5 35 35 H 1.08993 * 109.47104 * 59.99794 * 11 9 8 36 36 H 1.09004 * 109.46755 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.46792 * 299.99792 * 11 9 8 38 38 H 1.08996 * 109.47128 * 53.76405 * 13 12 9 39 39 H 1.09002 * 109.47071 * 173.76059 * 13 12 9 40 40 H 1.09000 * 109.47256 * 293.76455 * 13 12 9 41 41 H 1.09001 * 109.46625 * 310.00540 * 14 12 9 42 42 H 1.08996 * 109.47014 * 69.99582 * 14 12 9 43 43 H 0.96996 * 120.00110 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99707 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0742 0.0000 4 6 3.6681 0.6994 0.0040 5 6 4.7604 1.6935 0.0089 6 8 4.5012 2.8813 0.0150 7 7 6.0444 1.2839 0.0067 8 6 7.1278 2.2700 0.0121 9 6 8.4725 1.5496 0.1293 10 1 8.5312 1.0442 1.0932 11 6 9.6084 2.5686 0.0177 12 7 8.5939 0.5608 -0.9502 13 6 9.7214 -0.3488 -0.7066 14 6 8.7226 1.2205 -2.2565 15 6 8.5980 0.1936 -3.3523 16 8 8.4192 -0.9730 -3.0728 17 7 8.6844 0.5717 -4.6431 18 6 8.5716 -0.3626 -5.6401 19 1 8.4131 -1.4015 -5.3911 20 6 8.6600 0.0272 -6.9709 21 7 8.8524 1.2914 -7.2738 22 14 8.5056 -1.2456 -8.3292 23 1 7.1804 -1.9095 -8.2373 24 1 8.6339 -0.5785 -9.6497 25 1 9.5791 -2.2609 -8.1806 26 7 3.8995 -0.5860 -0.0031 27 16 2.5473 -1.3667 -0.0074 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3634 0.5182 -0.8874 30 1 -0.3634 0.5093 0.8925 31 1 1.9807 2.0981 -0.0006 32 1 6.2511 0.3363 0.0015 33 1 7.1022 2.8431 -0.9146 34 1 7.0016 2.9438 0.8596 35 1 9.5183 3.3022 0.8187 36 1 10.5664 2.0552 0.1007 37 1 9.5497 3.0740 -0.9463 38 1 9.6223 -0.7932 0.2837 39 1 9.7219 -1.1367 -1.4599 40 1 10.6565 0.2084 -0.7629 41 1 7.9351 1.9662 -2.3660 42 1 9.6956 1.7072 -2.3235 43 1 8.8263 1.5048 -4.8667 44 1 8.9137 1.5636 -8.2027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570709412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -22.638797 kcal Electronic energy + Delta-G solvation = -27290.367358 eV Core-core repulsion = 23369.802840 eV Total energy + Delta-G solvation = -3920.564517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45033 -39.18237 -38.22085 -37.13650 -34.40575 -33.82737 -33.33546 -31.22426 -30.92878 -28.40982 -28.05585 -27.20161 -25.24482 -24.62649 -23.63571 -20.98383 -20.46106 -19.94780 -18.86971 -18.32011 -17.79805 -17.30230 -16.62527 -15.87802 -15.65167 -15.15886 -14.86241 -14.76670 -14.36043 -14.28852 -13.97968 -13.85504 -13.52440 -13.43404 -13.24863 -13.21172 -12.88778 -12.68584 -12.62924 -12.24631 -12.03278 -11.78990 -11.46124 -11.29924 -11.22098 -11.13036 -11.04851 -10.85816 -10.75352 -10.42805 -10.19319 -9.95603 -9.63450 -9.44556 -9.05896 -8.79191 -8.44565 -7.95860 -7.83443 -6.39310 -3.80050 0.48574 1.27743 1.68587 1.72109 3.18510 3.21047 3.26570 3.30814 3.31499 3.92933 3.99732 4.25268 4.44062 4.70776 4.78745 4.95676 5.02549 5.08255 5.12088 5.19657 5.23157 5.28797 5.46258 5.49273 5.50084 5.59636 5.62819 5.71033 5.77533 5.80832 5.89319 5.96380 6.01474 6.15791 6.23337 6.30579 6.51095 6.57839 7.24748 7.35581 7.57025 7.66891 8.08498 8.25160 8.64462 9.20482 9.57190 10.09257 10.78489 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.003330 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.139713 B = 8406.104835 C =10408.815340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.254 4.254 3 C -0.142 4.142 4 C 0.056 3.944 5 C 0.589 3.411 6 O -0.541 6.541 7 N -0.692 5.692 8 C 0.128 3.872 9 C 0.064 3.936 10 H 0.089 0.911 11 C -0.185 4.185 12 N -0.512 5.512 13 C 0.022 3.978 14 C 0.042 3.958 15 C 0.445 3.555 16 O -0.577 6.577 17 N -0.565 5.565 18 C -0.298 4.298 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.274 1.274 26 N -0.511 5.511 27 S 0.467 5.533 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.170 0.830 32 H 0.420 0.580 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.018 0.982 41 H 0.087 0.913 42 H 0.052 0.948 43 H 0.391 0.609 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 0.585 17.498 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.385 4.385 3 C -0.175 4.175 4 C -0.119 4.119 5 C 0.370 3.630 6 O -0.418 6.418 7 N -0.344 5.344 8 C 0.003 3.997 9 C -0.045 4.045 10 H 0.107 0.893 11 C -0.244 4.244 12 N -0.235 5.235 13 C -0.125 4.125 14 C -0.090 4.090 15 C 0.230 3.770 16 O -0.461 6.461 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.120 0.880 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 N -0.346 5.346 27 S 0.622 5.378 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.187 0.813 32 H 0.258 0.742 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.116 0.884 40 H 0.036 0.964 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.224 0.776 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.327 -1.558 17.471 20.355 hybrid contribution 0.589 2.080 -1.005 2.384 sum -9.738 0.521 16.466 19.137 Atomic orbital electron populations 1.20186 0.86155 1.03272 1.03472 1.26118 1.03327 1.00338 1.08688 1.21214 0.90359 1.01899 1.03978 1.21059 0.94890 0.89281 1.06640 1.17233 0.82087 0.86680 0.77024 1.90781 1.83727 1.16079 1.51196 1.45676 1.04222 1.12125 1.72370 1.21479 0.84909 0.90858 1.02415 1.22048 0.93454 0.92796 0.96219 0.89299 1.22403 0.99105 0.99903 1.02979 1.61779 1.44083 1.17446 1.00237 1.22544 0.89852 0.97391 1.02750 1.21938 1.00938 0.96631 0.89448 1.19726 0.84393 0.89447 0.83396 1.90475 1.54179 1.18955 1.82528 1.41854 1.63345 1.10796 1.04144 1.19636 1.46454 0.91877 0.84840 0.88018 1.25251 0.97365 0.96873 0.98450 1.69608 1.49729 1.15225 1.19811 0.85932 0.79049 0.79983 0.79332 1.19930 1.20982 1.19930 1.72308 1.28824 1.10656 1.22802 1.80517 0.87557 1.12362 1.57399 0.90881 0.90135 0.90234 0.81301 0.74172 0.91227 0.90739 0.91845 0.91832 0.91596 0.92339 0.88421 0.96379 0.89524 0.93042 0.77565 0.91853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.46 36.00 0.38 -0.06 16 2 C -0.25 -2.47 6.58 -35.46 -0.23 -2.70 16 3 C -0.14 -1.73 9.93 -40.27 -0.40 -2.13 16 4 C 0.06 0.81 6.66 -84.06 -0.56 0.25 16 5 C 0.59 9.46 7.81 -12.40 -0.10 9.36 16 6 O -0.54 -9.69 16.65 5.30 0.09 -9.60 16 7 N -0.69 -10.36 5.41 -61.30 -0.33 -10.69 16 8 C 0.13 1.69 4.94 -4.04 -0.02 1.67 16 9 C 0.06 0.79 2.47 -67.71 -0.17 0.62 16 10 H 0.09 0.99 7.93 -51.93 -0.41 0.57 16 11 C -0.18 -1.96 8.42 37.16 0.31 -1.64 16 12 N -0.51 -8.13 3.82 -236.33 -0.90 -9.03 16 13 C 0.02 0.35 8.90 60.06 0.53 0.88 16 14 C 0.04 0.75 4.31 -4.98 -0.02 0.72 16 15 C 0.44 10.55 7.52 -10.99 -0.08 10.47 16 16 O -0.58 -15.42 13.88 5.55 0.08 -15.34 16 17 N -0.56 -14.52 5.29 -10.97 -0.06 -14.58 16 18 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 19 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.91 13.05 55.50 0.72 -24.18 16 22 Si 0.93 21.32 29.55 -169.99 -5.02 16.30 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 N -0.51 -7.29 10.71 24.85 0.27 -7.02 16 27 S 0.47 4.84 23.20 -107.50 -2.49 2.35 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.17 1.91 7.99 -52.49 -0.42 1.49 16 32 H 0.42 6.56 7.54 -40.82 -0.31 6.25 16 33 H 0.07 1.00 6.65 -51.93 -0.35 0.65 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.67 6.92 -51.93 -0.36 0.31 16 37 H 0.07 0.74 6.54 -51.93 -0.34 0.40 16 38 H 0.06 0.77 7.98 -51.93 -0.41 0.36 16 39 H 0.10 1.88 5.92 -51.93 -0.31 1.57 16 40 H 0.02 0.25 6.96 -51.93 -0.36 -0.11 16 41 H 0.09 1.50 6.30 -51.93 -0.33 1.18 16 42 H 0.05 0.85 6.81 -51.93 -0.35 0.49 16 43 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 44 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 377.69 15.07 5.69 5.69 Total: -1.00 -33.42 377.69 -8.46 -41.87 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -5.89 Total: 14.86 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -0.60 Total: 9.38 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -0.30 Total: -65.51 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.17 Total: -24.94 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 4.84 SS G_CDS: -2.49 Total: 2.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.42 -8.46 -41.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.235 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds