Wall clock time and date at job start Sat Apr 11 2020 05:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34996 * 127.27386 * 2 1 4 4 C 1.39491 * 111.68744 * 179.82511 * 3 2 1 5 5 C 1.47690 * 122.10810 * 180.18769 * 4 3 2 6 6 O 1.21577 * 119.99751 * 0.29388 * 5 4 3 7 7 N 1.34777 * 119.99941 * 180.28851 * 5 4 3 8 8 C 1.46497 * 119.99608 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46888 * 175.19005 * 8 7 5 10 10 H 1.09000 * 109.47123 * 295.31483 * 9 8 7 11 11 C 1.53007 * 109.47109 * 175.31894 * 9 8 7 12 12 N 1.46892 * 109.47269 * 55.31696 * 9 8 7 13 13 C 1.46898 * 111.00182 * 192.49310 * 12 9 8 14 14 C 1.46908 * 111.00199 * 68.54115 * 12 9 8 15 15 C 1.50692 * 109.47233 * 190.00086 * 14 12 9 16 16 O 1.21291 * 120.00481 * 0.02562 * 15 14 12 17 17 N 1.34776 * 119.99976 * 179.97438 * 15 14 12 18 18 C 1.37103 * 120.00217 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99696 * 0.02562 * 18 17 15 20 20 C 1.38950 * 120.00168 * 179.97438 * 18 17 15 21 21 N 1.31416 * 119.99760 * 0.02562 * 20 18 17 22 22 Si 1.86792 * 120.00096 * 180.02562 * 20 18 17 23 23 H 1.48509 * 109.47024 * 60.00258 * 22 20 18 24 24 H 1.48502 * 109.47336 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47180 * 300.00458 * 22 20 18 26 26 N 1.30607 * 115.78854 * 0.48671 * 4 3 2 27 27 S 1.56147 * 109.79857 * 359.72756 * 26 4 3 28 28 H 1.09002 * 109.47033 * 179.71209 * 1 2 3 29 29 H 1.09000 * 109.47442 * 59.71565 * 1 2 3 30 30 H 1.08997 * 109.47320 * 299.71079 * 1 2 3 31 31 H 1.08002 * 124.16401 * 359.95943 * 3 2 1 32 32 H 0.96990 * 119.99996 * 0.02562 * 7 5 4 33 33 H 1.08998 * 109.47574 * 295.18845 * 8 7 5 34 34 H 1.08999 * 109.47579 * 55.19163 * 8 7 5 35 35 H 1.08993 * 109.47104 * 59.99794 * 11 9 8 36 36 H 1.09004 * 109.46755 * 180.02562 * 11 9 8 37 37 H 1.09000 * 109.46792 * 299.99792 * 11 9 8 38 38 H 1.08996 * 109.47128 * 53.76405 * 13 12 9 39 39 H 1.09002 * 109.47071 * 173.76059 * 13 12 9 40 40 H 1.09000 * 109.47256 * 293.76455 * 13 12 9 41 41 H 1.09001 * 109.46625 * 310.00540 * 14 12 9 42 42 H 1.08996 * 109.47014 * 69.99582 * 14 12 9 43 43 H 0.96996 * 120.00110 * 359.97438 * 17 15 14 44 44 H 0.96998 * 119.99707 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3245 1.0742 0.0000 4 6 3.6681 0.6994 0.0040 5 6 4.7604 1.6935 0.0089 6 8 4.5012 2.8813 0.0150 7 7 6.0444 1.2839 0.0067 8 6 7.1278 2.2700 0.0121 9 6 8.4725 1.5496 0.1293 10 1 8.5312 1.0442 1.0932 11 6 9.6084 2.5686 0.0177 12 7 8.5939 0.5608 -0.9502 13 6 9.7214 -0.3488 -0.7066 14 6 8.7226 1.2205 -2.2565 15 6 8.5980 0.1936 -3.3523 16 8 8.4192 -0.9730 -3.0728 17 7 8.6844 0.5717 -4.6431 18 6 8.5716 -0.3626 -5.6401 19 1 8.4131 -1.4015 -5.3911 20 6 8.6600 0.0272 -6.9709 21 7 8.8524 1.2914 -7.2738 22 14 8.5056 -1.2456 -8.3292 23 1 7.1804 -1.9095 -8.2373 24 1 8.6339 -0.5785 -9.6497 25 1 9.5791 -2.2609 -8.1806 26 7 3.8995 -0.5860 -0.0031 27 16 2.5473 -1.3667 -0.0074 28 1 -0.3633 -1.0277 -0.0052 29 1 -0.3634 0.5182 -0.8874 30 1 -0.3634 0.5093 0.8925 31 1 1.9807 2.0981 -0.0006 32 1 6.2511 0.3363 0.0015 33 1 7.1022 2.8431 -0.9146 34 1 7.0016 2.9438 0.8596 35 1 9.5183 3.3022 0.8187 36 1 10.5664 2.0552 0.1007 37 1 9.5497 3.0740 -0.9463 38 1 9.6223 -0.7932 0.2837 39 1 9.7219 -1.1367 -1.4599 40 1 10.6565 0.2084 -0.7629 41 1 7.9351 1.9662 -2.3660 42 1 9.6956 1.7072 -2.3235 43 1 8.8263 1.5048 -4.8667 44 1 8.9137 1.5636 -8.2027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570709412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:49 Heat of formation + Delta-G solvation = -48.379079 kcal Electronic energy + Delta-G solvation = -27291.483540 eV Core-core repulsion = 23369.802840 eV Total energy + Delta-G solvation = -3921.680700 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53364 -40.62240 -39.50747 -38.61499 -36.01601 -35.43430 -34.17245 -33.28359 -32.05980 -29.59618 -29.21647 -28.16248 -26.81855 -25.95125 -24.90458 -21.93226 -21.87464 -21.06646 -20.49488 -19.74510 -19.25392 -18.36883 -18.15067 -17.03799 -16.95440 -16.62439 -16.37061 -16.13648 -15.80697 -15.68330 -15.22792 -15.13655 -14.95142 -14.62983 -14.09390 -14.01912 -13.92136 -13.82609 -13.61871 -13.48677 -13.46188 -13.08169 -13.02809 -12.85136 -12.48609 -12.43154 -12.29742 -12.18675 -12.14042 -11.86311 -11.80391 -11.45189 -11.11245 -10.47136 -10.29461 -10.18351 -10.00787 -9.73491 -9.19123 -8.46935 -5.95728 -0.45441 0.44852 0.69305 0.79585 1.38171 1.39408 1.50689 2.05268 2.07601 2.18465 2.27809 2.76993 3.19626 3.37813 3.61744 3.72722 3.84923 4.01277 4.19306 4.20580 4.26915 4.30672 4.34575 4.48699 4.55830 4.62057 4.65341 4.70173 4.73550 4.77481 4.87965 4.89842 4.98866 5.17572 5.21873 5.25940 5.28244 5.39512 5.42510 5.86799 6.05799 6.19404 6.46653 6.60040 7.05462 7.12473 7.55988 8.12019 8.70510 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.008709 B = 0.003330 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3214.139713 B = 8406.104835 C =10408.815340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.235 4.235 3 C -0.164 4.164 4 C 0.032 3.968 5 C 0.581 3.419 6 O -0.569 6.569 7 N -0.692 5.692 8 C 0.125 3.875 9 C 0.073 3.927 10 H 0.108 0.892 11 C -0.180 4.180 12 N -0.528 5.528 13 C 0.028 3.972 14 C 0.058 3.942 15 C 0.442 3.558 16 O -0.610 6.610 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.992 3.008 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.270 1.270 26 N -0.554 5.554 27 S 0.514 5.486 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.172 0.828 32 H 0.417 0.583 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.033 0.967 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.394 0.606 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.219 0.491 18.349 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.366 4.366 3 C -0.196 4.196 4 C -0.140 4.140 5 C 0.364 3.636 6 O -0.448 6.448 7 N -0.342 5.342 8 C 0.002 3.998 9 C -0.036 4.036 10 H 0.126 0.874 11 C -0.239 4.239 12 N -0.252 5.252 13 C -0.119 4.119 14 C -0.073 4.073 15 C 0.229 3.771 16 O -0.496 6.496 17 N -0.214 5.214 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.195 1.195 26 N -0.390 5.390 27 S 0.669 5.331 28 H 0.113 0.887 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.189 0.811 32 H 0.254 0.746 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.227 0.773 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.112 -1.630 18.343 21.508 hybrid contribution 0.758 2.031 -1.185 2.470 sum -10.354 0.401 17.158 20.044 Atomic orbital electron populations 1.20417 0.83230 1.05101 1.04617 1.26577 1.05027 0.99129 1.05839 1.21297 0.89909 1.02809 1.05600 1.21052 0.95316 0.89252 1.08425 1.17577 0.82767 0.86776 0.76523 1.90742 1.84216 1.17154 1.52727 1.45760 1.04463 1.12164 1.71794 1.21608 0.84990 0.90818 1.02402 1.22089 0.93470 0.92562 0.95455 0.87357 1.22363 0.98234 0.99786 1.03505 1.61686 1.44636 1.18731 1.00162 1.22415 0.90476 0.96459 1.02598 1.21727 1.02199 0.94724 0.88662 1.20760 0.82217 0.90176 0.83897 1.90455 1.55017 1.20937 1.83149 1.41944 1.64285 1.10513 1.04698 1.19619 1.48630 0.91567 0.86333 0.90286 1.26045 0.96385 0.98915 1.00030 1.69677 1.49627 1.16465 1.20591 0.85000 0.78919 0.77690 0.76803 1.19833 1.19471 1.19492 1.72068 1.31896 1.10869 1.24182 1.80226 0.86008 1.11307 1.55527 0.88744 0.89264 0.88584 0.81086 0.74595 0.92580 0.89132 0.89505 0.91337 0.92376 0.89872 0.92638 0.94830 0.88894 0.91015 0.77305 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.46 71.23 0.75 0.05 16 2 C -0.23 -4.20 6.58 24.94 0.16 -4.03 16 3 C -0.16 -3.98 9.93 21.83 0.22 -3.76 16 4 C 0.03 0.96 6.66 42.13 0.28 1.24 16 5 C 0.58 19.17 7.81 86.74 0.68 19.85 16 6 O -0.57 -20.91 16.65 -3.96 -0.07 -20.97 16 7 N -0.69 -20.90 5.41 -466.12 -2.52 -23.42 16 8 C 0.13 3.22 4.94 86.38 0.43 3.65 16 9 C 0.07 1.65 2.47 44.92 0.11 1.76 16 10 H 0.11 2.10 7.93 -2.39 -0.02 2.09 16 11 C -0.18 -3.34 8.42 71.98 0.61 -2.73 16 12 N -0.53 -16.40 3.82 -901.62 -3.45 -19.84 16 13 C 0.03 0.85 8.90 127.69 1.14 1.99 16 14 C 0.06 2.07 4.31 85.55 0.37 2.44 16 15 C 0.44 21.52 7.52 87.65 0.66 22.18 16 16 O -0.61 -33.76 13.88 -3.06 -0.04 -33.81 16 17 N -0.58 -30.54 5.29 -306.99 -1.62 -32.16 16 18 C -0.33 -19.26 9.68 84.04 0.81 -18.45 16 19 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 20 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 21 N -0.92 -51.06 13.05 21.66 0.28 -50.78 16 22 Si 0.99 43.77 29.55 68.60 2.03 45.80 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 N -0.55 -15.93 10.71 -75.29 -0.81 -16.73 16 27 S 0.51 10.10 23.20 -56.49 -1.31 8.79 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.17 3.92 7.99 -2.91 -0.02 3.90 16 32 H 0.42 13.20 7.54 -92.72 -0.70 12.50 16 33 H 0.06 1.60 6.65 -2.39 -0.02 1.58 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.23 6.92 -2.38 -0.02 1.22 16 37 H 0.06 1.18 6.54 -2.39 -0.02 1.17 16 38 H 0.08 2.06 7.98 -2.39 -0.02 2.04 16 39 H 0.05 2.18 5.92 -2.39 -0.01 2.16 16 40 H 0.03 0.90 6.96 -2.39 -0.02 0.88 16 41 H 0.09 3.23 6.30 -2.39 -0.02 3.21 16 42 H 0.07 2.28 6.81 -2.39 -0.02 2.27 16 43 H 0.39 20.04 7.90 -92.71 -0.73 19.30 16 44 H 0.28 14.39 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -74.86 377.69 -1.20 -76.07 By element: Atomic # 1 Polarization: 43.56 SS G_CDS: -0.37 Total: 43.19 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.67 Total: 23.87 kcal Atomic # 7 Polarization: -134.82 SS G_CDS: -8.11 Total: -142.93 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.11 Total: -54.78 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 10.10 SS G_CDS: -1.31 Total: 8.79 kcal Total: -74.86 -1.20 -76.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570709412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.689 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds