Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38615 * 120.44778 * 2 1 4 4 C 1.38580 * 118.39872 * 180.02562 * 3 2 1 5 5 C 1.50695 * 120.44749 * 179.97438 * 4 3 2 6 6 N 1.46898 * 109.46941 * 95.00217 * 5 4 3 7 7 C 1.46905 * 111.00329 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.46862 * 325.00539 * 7 6 5 9 9 C 1.52994 * 109.46799 * 85.00053 * 7 6 5 10 10 O 1.42899 * 109.47599 * 65.00568 * 9 7 6 11 11 C 1.52997 * 109.47325 * 205.00325 * 7 6 5 12 12 N 1.46505 * 109.47212 * 54.99792 * 11 7 6 13 13 C 1.34771 * 119.99622 * 179.97438 * 12 11 7 14 14 O 1.21280 * 120.00597 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99622 * 179.97438 * 13 12 11 16 16 S 1.81002 * 109.47156 * 180.02562 * 15 13 12 17 17 C 1.76204 * 100.00151 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99845 * 359.97438 * 17 16 15 19 19 C 1.38796 * 120.00054 * 180.02562 * 17 16 15 20 20 N 1.31631 * 120.00100 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47203 * 90.00024 * 21 19 17 23 23 H 1.48506 * 109.46989 * 210.00023 * 21 19 17 24 24 H 1.48506 * 109.47313 * 329.99924 * 21 19 17 25 25 N 1.32345 * 119.10136 * 0.27869 * 4 3 2 26 26 C 1.31777 * 120.82274 * 359.44125 * 25 4 3 27 27 N 1.31811 * 121.75259 * 0.56915 * 26 25 4 28 28 H 1.09002 * 109.46848 * 90.00183 * 1 2 3 29 29 H 1.08997 * 109.47242 * 209.99675 * 1 2 3 30 30 H 1.08997 * 109.47383 * 330.00292 * 1 2 3 31 31 H 1.07996 * 120.80055 * 0.04265 * 3 2 1 32 32 H 1.09003 * 109.47507 * 335.00654 * 5 4 3 33 33 H 1.09002 * 109.47534 * 215.00287 * 5 4 3 34 34 H 1.00899 * 111.00432 * 303.95584 * 6 5 4 35 35 H 1.09009 * 109.47010 * 185.00339 * 9 7 6 36 36 H 1.09000 * 109.47718 * 305.00130 * 9 7 6 37 37 H 0.96692 * 114.00196 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.47153 * 294.99784 * 11 7 6 39 39 H 1.09001 * 109.46832 * 174.99975 * 11 7 6 40 40 H 0.96996 * 119.99606 * 0.02562 * 12 11 7 41 41 H 1.09001 * 109.47380 * 300.00190 * 15 13 12 42 42 H 1.09002 * 109.47060 * 60.00278 * 15 13 12 43 43 H 0.96999 * 120.00126 * 180.02562 * 20 19 17 44 44 H 1.08004 * 119.12314 * 180.27071 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1454 -0.0005 5 6 4.4040 2.4164 -0.0012 6 7 4.7695 2.7648 1.3783 7 6 5.5619 4.0012 1.4169 8 1 6.2029 4.0495 0.5366 9 6 4.6224 5.2087 1.4305 10 8 3.8635 5.2083 2.6413 11 6 6.4267 4.0136 2.6789 12 7 7.2408 2.7964 2.7250 13 6 8.0860 2.5898 3.7542 14 8 8.1725 3.4112 4.6423 15 6 8.9230 1.3375 3.8020 16 16 9.9462 1.3522 5.2949 17 6 10.7951 -0.1794 5.0992 18 1 10.5975 -0.8001 4.2378 19 6 11.7170 -0.5887 6.0527 20 7 11.9567 0.1671 7.1034 21 14 12.6163 -2.2127 5.8456 22 1 13.8731 -1.9894 5.0867 23 1 12.9383 -2.7742 7.1822 24 1 11.7526 -3.1658 5.1033 25 7 4.1963 -0.0332 -0.0067 26 6 3.4956 -1.1492 -0.0012 27 7 2.1775 -1.1407 -0.0006 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6900 2.1418 0.0007 32 1 3.8135 3.2233 -0.4353 33 1 5.3090 2.2706 -0.5910 34 1 3.9495 2.8422 1.9611 35 1 5.2085 6.1258 1.3693 36 1 3.9459 5.1525 0.5777 37 1 3.2455 5.9480 2.7183 38 1 5.7848 4.0550 3.5589 39 1 7.0791 4.8867 2.6636 40 1 7.1718 2.1397 2.0145 41 1 8.2703 0.4646 3.8179 42 1 9.5645 1.2954 2.9217 43 1 12.6012 -0.1187 7.7696 44 1 4.0152 -2.0961 -0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571423453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -72.541994 kcal Electronic energy + Delta-G solvation = -26152.747032 eV Core-core repulsion = 22230.018550 eV Total energy + Delta-G solvation = -3922.728482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.02960 -40.62755 -39.12723 -36.71281 -35.77006 -34.92690 -34.57798 -33.61054 -31.60979 -30.24618 -29.27674 -27.69479 -26.64327 -26.25785 -24.95949 -22.40205 -21.92921 -21.57242 -19.79878 -18.71631 -18.48704 -17.76328 -17.58959 -17.12737 -16.87511 -16.70881 -16.41814 -16.28699 -16.13847 -15.87155 -15.49522 -15.27450 -14.72068 -14.54225 -14.34416 -14.29013 -14.16733 -13.83160 -13.61709 -13.42321 -13.16072 -13.15750 -12.89390 -12.80619 -12.65325 -12.54339 -12.29733 -11.79254 -11.71983 -11.38961 -11.13625 -10.96801 -10.85847 -10.47684 -10.27291 -10.20484 -9.98058 -9.42740 -8.65828 -8.33902 -6.11955 -0.06974 0.07125 1.28195 1.42758 1.47582 1.59071 1.68184 2.27687 2.38320 2.64753 2.99725 3.03303 3.15302 3.18746 3.34787 3.39441 3.62464 3.83275 3.96866 4.03153 4.08697 4.15683 4.27797 4.30733 4.39005 4.45907 4.52435 4.56961 4.62581 4.70330 4.71548 4.73397 4.80203 4.87149 5.01929 5.08700 5.42271 5.49202 5.53813 5.92045 6.10844 6.20689 6.31685 6.62185 6.92873 7.06965 7.15695 7.33645 8.75493 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010361 B = 0.002458 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.735094 B =11390.187146 C =13587.839864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.159 3.841 3 C -0.217 4.217 4 C 0.168 3.832 5 C 0.111 3.889 6 N -0.684 5.684 7 C 0.089 3.911 8 H 0.119 0.881 9 C 0.051 3.949 10 O -0.590 6.590 11 C 0.136 3.864 12 N -0.698 5.698 13 C 0.530 3.470 14 O -0.572 6.572 15 C -0.127 4.127 16 S -0.150 6.150 17 C -0.546 4.546 18 H 0.081 0.919 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.260 1.260 25 N -0.530 5.530 26 C 0.285 3.715 27 N -0.547 5.547 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.351 0.649 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.051 0.949 39 H 0.063 0.937 40 H 0.415 0.585 41 H 0.101 0.899 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.158 7.624 -23.025 35.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.013 3.987 3 C -0.239 4.239 4 C 0.021 3.979 5 C -0.017 4.017 6 N -0.317 5.317 7 C -0.021 4.021 8 H 0.136 0.864 9 C -0.028 4.028 10 O -0.398 6.398 11 C 0.012 3.988 12 N -0.351 5.351 13 C 0.315 3.685 14 O -0.452 6.452 15 C -0.278 4.278 16 S 0.077 5.923 17 C -0.694 4.694 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.184 1.184 25 N -0.245 5.245 26 C -0.003 4.003 27 N -0.263 5.263 28 H 0.117 0.883 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.193 0.807 32 H 0.101 0.899 33 H 0.114 0.886 34 H 0.171 0.829 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.249 0.751 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.252 0.748 41 H 0.119 0.881 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -24.587 7.221 -21.322 33.337 hybrid contribution -0.699 -0.335 -1.130 1.370 sum -25.286 6.886 -22.452 34.510 Atomic orbital electron populations 1.20887 0.85667 1.04920 1.04677 1.22364 0.99212 0.88167 0.88953 1.22914 0.95231 1.01552 1.04186 1.21938 0.91946 0.94138 0.89835 1.20936 0.99370 0.90622 0.90797 1.60241 1.27370 1.34629 1.09440 1.21937 0.94377 0.87875 0.97917 0.86355 1.22812 0.94376 0.98220 0.87428 1.86472 1.58378 1.54164 1.40834 1.21255 0.92313 0.86313 0.98930 1.45588 1.40786 1.24195 1.24536 1.20027 0.79982 0.86677 0.81765 1.90671 1.68041 1.47297 1.39146 1.23341 1.01426 0.99134 1.03906 1.85512 1.49466 1.29720 1.27592 1.23198 1.27879 1.06322 1.11998 0.90135 1.26149 0.96956 1.02297 0.93835 1.70188 1.33978 1.39380 1.11230 0.84937 0.78309 0.76640 0.77975 1.19116 1.20160 1.18354 1.68270 1.42610 0.99422 1.14186 1.25329 0.86932 0.97606 0.90430 1.68319 1.10717 1.31698 1.15530 0.88342 0.90522 0.87950 0.80719 0.89927 0.88611 0.82902 0.91686 0.90544 0.75132 0.93081 0.91889 0.74761 0.88097 0.87421 0.91974 0.77604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.22 71.24 0.73 -0.06 16 2 C 0.16 2.35 6.82 42.58 0.29 2.64 16 3 C -0.22 -2.60 9.52 22.44 0.21 -2.39 16 4 C 0.17 2.63 6.34 42.56 0.27 2.89 16 5 C 0.11 1.18 5.84 85.56 0.50 1.68 16 6 N -0.68 -9.82 5.68 -495.59 -2.81 -12.64 16 7 C 0.09 1.16 2.57 44.91 0.12 1.28 16 8 H 0.12 1.11 7.80 -2.39 -0.02 1.09 16 9 C 0.05 0.41 6.71 71.98 0.48 0.90 16 10 O -0.59 -6.93 12.05 -148.98 -1.80 -8.72 16 11 C 0.14 3.25 5.26 86.38 0.45 3.70 16 12 N -0.70 -20.08 5.39 -463.06 -2.50 -22.57 16 13 C 0.53 21.52 7.85 87.66 0.69 22.21 16 14 O -0.57 -28.49 15.86 -3.03 -0.05 -28.54 16 15 C -0.13 -5.51 6.16 71.24 0.44 -5.07 16 16 S -0.15 -8.77 20.57 -56.49 -1.16 -9.93 16 17 C -0.55 -32.52 9.50 67.95 0.65 -31.88 16 18 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.72 5.49 84.86 0.47 1.19 16 20 N -0.91 -57.51 13.22 21.65 0.29 -57.23 16 21 Si 1.00 45.06 29.55 68.60 2.03 47.09 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 24 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 25 N -0.53 -11.11 10.38 -188.08 -1.95 -13.06 16 26 C 0.28 5.76 12.29 180.88 2.22 7.98 16 27 N -0.55 -10.89 10.38 -188.07 -1.95 -12.85 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.32 8.10 -2.39 -0.02 0.30 16 31 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 32 H 0.08 0.35 7.28 -2.39 -0.02 0.33 16 33 H 0.10 1.07 8.05 -2.39 -0.02 1.05 16 34 H 0.35 5.59 7.93 -89.69 -0.71 4.88 16 35 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 36 H 0.08 0.22 7.35 -2.39 -0.02 0.20 16 37 H 0.40 1.28 9.12 -74.06 -0.68 0.60 16 38 H 0.05 1.51 7.39 -2.39 -0.02 1.49 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 40 H 0.42 10.12 8.14 -92.71 -0.75 9.36 16 41 H 0.10 4.13 8.14 -2.40 -0.02 4.11 16 42 H 0.11 4.22 8.14 -2.39 -0.02 4.20 16 43 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 44 H 0.21 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -88.05 391.22 -3.48 -91.53 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -1.09 Total: 21.86 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: 7.51 Total: 5.06 kcal Atomic # 7 Polarization: -109.42 SS G_CDS: -8.93 Total: -118.34 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -1.84 Total: -37.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -88.05 -3.48 -91.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571423453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.986 kcal (2) G-P(sol) polarization free energy of solvation -88.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds