Wall clock time and date at job start Sat Apr 11 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35363 * 127.24874 * 2 1 4 4 N 1.35032 * 107.23257 * 180.12908 * 3 2 1 5 5 H 0.97001 * 124.88983 * 179.89862 * 4 3 2 6 6 N 1.28466 * 110.22744 * 359.62253 * 4 3 2 7 7 C 1.31809 * 110.07776 * 0.23353 * 6 4 3 8 8 C 1.47706 * 126.52538 * 179.97438 * 7 6 4 9 9 O 1.21568 * 120.00695 * 180.02562 * 8 7 6 10 10 N 1.34782 * 119.99832 * 0.02698 * 8 7 6 11 11 C 1.46493 * 120.00049 * 179.97438 * 10 8 7 12 12 H 1.08999 * 109.47579 * 34.99779 * 11 10 8 13 13 C 1.53002 * 109.47215 * 274.99799 * 11 10 8 14 14 C 1.53000 * 109.47174 * 155.00313 * 11 10 8 15 15 N 1.46503 * 109.47007 * 304.99553 * 14 11 10 16 16 C 1.46500 * 120.00393 * 270.00545 * 15 14 11 17 17 C 1.34783 * 119.99785 * 90.00086 * 15 14 11 18 18 O 1.21279 * 119.99622 * 0.02562 * 17 15 14 19 19 C 1.50698 * 119.99699 * 180.02562 * 17 15 14 20 20 S 1.81008 * 109.46854 * 179.97438 * 19 17 15 21 21 C 1.76203 * 99.99980 * 179.97438 * 20 19 17 22 22 H 1.08001 * 120.00036 * 359.97438 * 21 20 19 23 23 C 1.38794 * 119.99956 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00037 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00020 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47169 * 59.99788 * 25 23 21 27 27 H 1.48493 * 109.47165 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46926 * 299.99913 * 25 23 21 29 29 H 1.08997 * 109.47232 * 270.27089 * 1 2 3 30 30 H 1.08998 * 109.47309 * 30.27620 * 1 2 3 31 31 H 1.08998 * 109.46567 * 150.27313 * 1 2 3 32 32 H 1.08002 * 126.38645 * 359.97438 * 3 2 1 33 33 H 0.97003 * 119.99640 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.46819 * 59.99954 * 13 11 10 35 35 H 1.08997 * 109.47555 * 179.97438 * 13 11 10 36 36 H 1.09005 * 109.47252 * 300.00571 * 13 11 10 37 37 H 1.08998 * 109.47412 * 64.99822 * 14 11 10 38 38 H 1.09002 * 109.47268 * 185.00103 * 14 11 10 39 39 H 1.08994 * 109.47306 * 89.99184 * 16 15 14 40 40 H 1.09002 * 109.47107 * 209.99807 * 16 15 14 41 41 H 1.09001 * 109.46760 * 329.99503 * 16 15 14 42 42 H 1.08999 * 109.46960 * 299.99187 * 19 17 15 43 43 H 1.08998 * 109.47595 * 59.99822 * 19 17 15 44 44 H 0.97004 * 120.00410 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 -0.0029 5 1 4.3888 1.1730 -0.0050 6 7 3.5999 -0.6693 0.0033 7 6 2.3636 -1.1264 0.0054 8 6 1.9506 -2.5445 0.0117 9 8 0.7699 -2.8339 0.0127 10 7 2.8829 -3.5179 0.0164 11 6 2.4734 -4.9244 0.0232 12 1 1.5636 -5.0408 -0.5656 13 6 2.2102 -5.3720 1.4624 14 6 3.5861 -5.7825 -0.5822 15 7 3.9207 -5.2780 -1.9163 16 6 3.2173 -5.7952 -3.0928 17 6 4.8756 -4.3379 -2.0613 18 8 5.4581 -3.9101 -1.0874 19 6 5.2194 -3.8186 -3.4336 20 16 6.5279 -2.5753 -3.2978 21 6 6.7260 -2.1528 -4.9969 22 1 6.1190 -2.6364 -5.7479 23 6 7.6621 -1.1985 -5.3701 24 7 8.4016 -0.6087 -4.4547 25 14 7.8717 -0.7500 -7.1713 26 1 6.5895 -0.2216 -7.7023 27 1 8.9265 0.2868 -7.3038 28 1 8.2653 -1.9583 -7.9397 29 1 -0.3633 0.0049 1.0276 30 1 -0.3634 0.8875 -0.5181 31 1 -0.3632 -0.8924 -0.5096 32 1 2.0221 2.1138 -0.0004 33 1 3.8251 -3.2870 0.0153 34 1 1.4175 -4.7607 1.8938 35 1 1.9050 -6.4184 1.4675 36 1 3.1200 -5.2555 2.0514 37 1 4.4687 -5.7360 0.0557 38 1 3.2472 -6.8156 -0.6589 39 1 2.3332 -5.1871 -3.2840 40 1 3.8792 -5.7564 -3.9580 41 1 2.9164 -6.8270 -2.9116 42 1 5.5643 -4.6427 -4.0580 43 1 4.3351 -3.3672 -3.8834 44 1 9.0556 0.0586 -4.7154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572235321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:03 Heat of formation + Delta-G solvation = 0.077376 kcal Electronic energy + Delta-G solvation = -27953.921411 eV Core-core repulsion = 24034.341941 eV Total energy + Delta-G solvation = -3919.579470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.50830 -40.01925 -38.83749 -36.11772 -34.58672 -32.90531 -32.44905 -31.92942 -30.40932 -29.40569 -27.25425 -27.01233 -25.67692 -25.22361 -24.22924 -21.45697 -20.36160 -19.96667 -19.23983 -18.08417 -17.67965 -17.05298 -16.53835 -16.30816 -15.80120 -15.56365 -15.15163 -14.82471 -14.34857 -14.07443 -13.89517 -13.67906 -13.34339 -13.15515 -13.03026 -12.88583 -12.83643 -12.72759 -12.50836 -12.36872 -12.20632 -12.04709 -11.82730 -11.70946 -11.17156 -11.06309 -11.05588 -10.78618 -10.60395 -9.85449 -9.83170 -9.41887 -9.31374 -9.07786 -8.94588 -8.72910 -8.51285 -8.23690 -6.49862 -6.23866 -3.93102 1.78574 2.19351 2.88448 3.00104 3.00147 3.21062 3.23632 3.26438 3.42178 3.60559 3.63224 4.18749 4.60738 4.74447 4.80480 4.87810 5.06347 5.11293 5.16365 5.23217 5.27029 5.32265 5.39375 5.45976 5.56881 5.59265 5.61689 5.70483 5.72945 5.81991 5.89919 5.92742 6.02045 6.12515 6.13424 6.23440 6.52003 6.56648 6.72927 7.10980 7.47960 7.57339 7.71436 8.06641 8.32853 8.41743 8.53844 9.21744 10.83308 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009741 B = 0.004090 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.680139 B = 6844.570503 C = 8796.113497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.151 4.151 3 C -0.026 4.026 4 N -0.374 5.374 5 H 0.449 0.551 6 N -0.231 5.231 7 C -0.025 4.025 8 C 0.608 3.392 9 O -0.544 6.544 10 N -0.709 5.709 11 C 0.126 3.874 12 H 0.088 0.912 13 C -0.161 4.161 14 C 0.107 3.893 15 N -0.623 5.623 16 C 0.080 3.920 17 C 0.538 3.462 18 O -0.516 6.516 19 C -0.151 4.151 20 S -0.054 6.054 21 C -0.536 4.536 22 H 0.071 0.929 23 C 0.075 3.925 24 N -0.868 5.868 25 Si 0.916 3.084 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.182 0.818 33 H 0.420 0.580 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.145 -4.586 9.188 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.161 4.161 3 C -0.169 4.169 4 N -0.088 5.088 5 H 0.294 0.706 6 N -0.067 5.067 7 C -0.186 4.186 8 C 0.393 3.607 9 O -0.421 6.421 10 N -0.365 5.365 11 C 0.019 3.981 12 H 0.106 0.894 13 C -0.220 4.220 14 C -0.017 4.017 15 N -0.358 5.358 16 C -0.063 4.063 17 C 0.327 3.673 18 O -0.391 6.391 19 C -0.301 4.301 20 S 0.173 5.827 21 C -0.684 4.684 22 H 0.089 0.911 23 C -0.134 4.134 24 N -0.504 5.504 25 Si 0.742 3.258 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.199 0.801 33 H 0.261 0.739 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.868 -4.434 10.646 17.279 hybrid contribution -0.454 0.582 -2.472 2.580 sum -13.322 -3.852 8.174 16.097 Atomic orbital electron populations 1.20128 0.88348 1.02878 1.01971 1.20331 0.97347 0.90513 1.07956 1.22676 0.84377 1.00431 1.09458 1.43312 1.08645 1.04520 1.52355 0.70578 1.73762 1.22635 0.93718 1.16609 1.21826 0.89720 0.94976 1.12064 1.16893 0.85287 0.82868 0.75692 1.90707 1.16971 1.82953 1.51449 1.46230 1.11586 1.05056 1.73637 1.21417 0.98629 0.81007 0.97011 0.89381 1.22129 1.02492 1.01440 0.95937 1.21812 0.98597 0.96974 0.84325 1.47840 1.39084 1.41837 1.07034 1.21798 0.97336 0.98985 0.88231 1.20331 0.77807 0.77789 0.91386 1.90615 1.50996 1.56850 1.40606 1.23553 1.05946 1.04691 0.95948 1.85333 1.41437 1.44861 1.11085 1.22843 1.25470 1.27488 0.92576 0.91124 1.24952 0.94770 0.95123 0.98556 1.70005 1.21809 1.25460 1.33117 0.86267 0.78018 0.78319 0.83178 1.19985 1.20810 1.19897 0.91796 0.92177 0.90105 0.80120 0.73880 0.91710 0.91541 0.92114 0.89127 0.89094 0.92743 0.90612 0.91195 0.89330 0.89476 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 9.93 36.01 0.36 -0.54 16 2 C -0.15 -2.14 6.25 -104.40 -0.65 -2.79 16 3 C -0.03 -0.30 11.97 -17.17 -0.21 -0.50 16 4 N -0.37 -4.95 6.83 30.47 0.21 -4.74 16 5 H 0.45 4.59 8.96 -190.44 -1.71 2.88 16 6 N -0.23 -3.95 11.92 33.42 0.40 -3.55 16 7 C -0.03 -0.42 7.13 -82.76 -0.59 -1.01 16 8 C 0.61 10.40 7.79 -12.39 -0.10 10.30 16 9 O -0.54 -9.72 14.78 5.31 0.08 -9.64 16 10 N -0.71 -11.20 4.48 -54.80 -0.25 -11.45 16 11 C 0.13 1.56 2.88 -67.93 -0.20 1.37 16 12 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 13 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 14 C 0.11 1.23 5.19 -4.04 -0.02 1.21 16 15 N -0.62 -8.62 2.77 -181.57 -0.50 -9.12 16 16 C 0.08 0.85 10.29 59.85 0.62 1.47 16 17 C 0.54 9.95 6.99 -10.98 -0.08 9.87 16 18 O -0.52 -10.93 13.18 5.56 0.07 -10.85 16 19 C -0.15 -3.08 4.71 36.00 0.17 -2.91 16 20 S -0.05 -1.44 20.57 -107.50 -2.21 -3.65 16 21 C -0.54 -15.15 9.50 30.94 0.29 -14.85 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.08 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -25.75 13.22 55.49 0.73 -25.02 16 25 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.11 6.72 -51.93 -0.35 0.76 16 32 H 0.18 1.32 8.06 -52.49 -0.42 0.89 16 33 H 0.42 7.44 5.55 -40.82 -0.23 7.22 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 1.15 7.42 -51.93 -0.39 0.76 16 38 H 0.09 0.73 7.89 -51.93 -0.41 0.32 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 41 H 0.07 0.54 7.89 -51.93 -0.41 0.13 16 42 H 0.09 1.67 7.40 -51.92 -0.38 1.29 16 43 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 383.20 15.07 5.77 5.77 Total: -1.00 -36.43 383.20 -8.39 -44.81 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -7.52 Total: 8.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -0.14 Total: 2.30 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.59 Total: -53.88 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: 0.15 Total: -20.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.43 -8.39 -44.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572235321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.891 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds