Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35317 * 126.13060 * 2 1 4 4 C 1.39867 * 107.92220 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.89897 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47042 * 125.00044 * 5 4 3 7 7 O 1.21279 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99935 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47391 * 34.99730 * 9 8 6 11 11 C 1.53002 * 109.46799 * 274.99826 * 9 8 6 12 12 C 1.53000 * 109.46840 * 155.00060 * 9 8 6 13 13 N 1.46504 * 109.47054 * 304.99499 * 12 9 8 14 14 C 1.34777 * 120.00071 * 180.02562 * 13 12 9 15 15 O 1.21281 * 119.99830 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00142 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47076 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99786 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00495 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46781 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46685 * 120.00530 * 22 20 18 25 25 H 1.48496 * 109.47112 * 240.00327 * 22 20 18 26 26 N 1.30833 * 108.20109 * 0.26399 * 4 3 2 27 27 N 1.34944 * 126.12595 * 180.02562 * 2 1 3 28 28 H 0.97007 * 126.03608 * 359.96538 * 27 2 1 29 29 H 1.09001 * 109.47266 * 89.99807 * 1 2 3 30 30 H 1.08990 * 109.47440 * 209.99716 * 1 2 3 31 31 H 1.09003 * 109.47039 * 330.00567 * 1 2 3 32 32 H 1.07998 * 126.03507 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47190 * 5.00164 * 5 4 3 34 34 H 1.08995 * 109.47434 * 245.00148 * 5 4 3 35 35 H 0.96998 * 119.99599 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.47407 * 60.00500 * 11 9 8 37 37 H 1.09000 * 109.46986 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47075 * 299.99543 * 11 9 8 39 39 H 1.08991 * 109.47625 * 64.99762 * 12 9 8 40 40 H 1.09002 * 109.46642 * 184.99913 * 12 9 8 41 41 H 0.97000 * 119.99700 * 0.02562 * 13 12 9 42 42 H 1.09001 * 109.47456 * 300.00106 * 16 14 13 43 43 H 1.09002 * 109.47145 * 60.00200 * 16 14 13 44 44 H 0.97009 * 119.99727 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0013 6 6 5.7396 1.1738 1.1622 7 8 5.4113 0.2839 1.9178 8 7 6.8958 1.8366 1.3635 9 6 7.7566 1.4809 2.4942 10 1 7.7049 0.4057 2.6662 11 6 7.2844 2.2210 3.7473 12 6 9.2005 1.8784 2.1808 13 7 9.6128 1.2635 0.9166 14 6 10.8547 1.4751 0.4378 15 8 11.6311 2.1742 1.0537 16 6 11.2787 0.8431 -0.8629 17 16 12.9868 1.3133 -1.2336 18 6 13.2146 0.4608 -2.7588 19 1 12.4093 -0.1267 -3.1746 20 6 14.4286 0.5450 -3.4263 21 7 15.4098 1.2614 -2.9198 22 14 14.6704 -0.3593 -5.0429 23 1 13.4249 -1.0879 -5.3935 24 1 14.9897 0.6184 -6.1140 25 1 15.7886 -1.3268 -4.9064 26 7 3.6333 -0.6524 -0.0067 27 7 2.3026 -1.0900 -0.0005 28 1 2.0054 -2.0134 -0.0004 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8901 0.5138 32 1 1.9741 2.1210 0.0004 33 1 4.5485 2.5818 0.0882 34 1 5.4028 1.4005 -0.9329 35 1 7.1581 2.5486 0.7593 36 1 6.2559 1.9378 3.9706 37 1 7.9252 1.9567 4.5885 38 1 7.3362 3.2962 3.5754 39 1 9.2686 2.9629 2.0965 40 1 9.8541 1.5345 2.9823 41 1 8.9919 0.7041 0.4242 42 1 11.2100 -0.2416 -0.7792 43 1 10.6252 1.1877 -1.6643 44 1 16.2584 1.3200 -3.3861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579327840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -12.291209 kcal Electronic energy + Delta-G solvation = -25795.303310 eV Core-core repulsion = 21875.187498 eV Total energy + Delta-G solvation = -3920.115812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59123 -40.08148 -39.03824 -36.47639 -33.72693 -33.63118 -32.42698 -32.08871 -31.34581 -29.42324 -28.68284 -27.32967 -25.99009 -25.37009 -22.52858 -21.05535 -20.77290 -20.34382 -19.89331 -17.94158 -17.73718 -17.28315 -16.72002 -16.25574 -15.76248 -15.54593 -15.11865 -14.99283 -14.80289 -14.40470 -14.12295 -14.03535 -13.69607 -13.55235 -13.32765 -13.24124 -13.03915 -12.98421 -12.87829 -12.59161 -12.56831 -12.20999 -12.14188 -11.78937 -11.24815 -11.06908 -11.01767 -10.83308 -10.75398 -10.09974 -9.80856 -9.57875 -9.47309 -9.33568 -9.07962 -8.93938 -8.89397 -8.23506 -6.50028 -6.21878 -3.92253 1.58140 2.34080 2.44721 2.54998 2.93833 3.04677 3.09979 3.21755 3.28605 3.33495 3.71239 4.16695 4.20391 4.27928 4.41209 4.61368 4.70178 4.81269 4.87650 4.97376 5.01473 5.08020 5.13489 5.15171 5.30507 5.34446 5.36923 5.41108 5.44580 5.54169 5.70183 5.77127 5.79807 5.88790 5.94159 6.14258 6.22360 6.29517 6.56001 6.98514 7.23407 7.42726 7.60139 7.66574 8.01436 8.35613 8.58202 9.23789 10.85568 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002039 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.730272 B =13726.761148 C =15627.177255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.082 3.918 3 C -0.266 4.266 4 C 0.088 3.912 5 C -0.062 4.062 6 C 0.518 3.482 7 O -0.522 6.522 8 N -0.729 5.729 9 C 0.133 3.867 10 H 0.095 0.905 11 C -0.160 4.160 12 C 0.114 3.886 13 N -0.739 5.739 14 C 0.532 3.468 15 O -0.517 6.517 16 C -0.154 4.154 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 N -0.260 5.260 27 N -0.475 5.475 28 H 0.437 0.563 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.399 0.601 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.962 1.147 7.737 31.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.080 4.080 5 C -0.104 4.104 6 C 0.303 3.697 7 O -0.396 6.396 8 N -0.383 5.383 9 C 0.028 3.972 10 H 0.113 0.887 11 C -0.219 4.219 12 C -0.011 4.011 13 N -0.395 5.395 14 C 0.318 3.682 15 O -0.391 6.391 16 C -0.304 4.304 17 S 0.167 5.833 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 N -0.082 5.082 27 N -0.184 5.184 28 H 0.280 0.720 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.165 0.835 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -28.993 0.695 9.313 30.460 hybrid contribution -1.548 -1.059 -2.254 2.932 sum -30.541 -0.365 7.060 31.349 Atomic orbital electron populations 1.20453 0.87281 1.03967 1.03410 1.21097 0.94598 0.87794 1.01202 1.21073 0.91351 0.99184 1.17936 1.21463 0.94406 0.91616 1.00529 1.20048 0.92039 0.99393 0.98895 1.20384 0.81380 0.81787 0.86184 1.90756 1.72182 1.29940 1.46728 1.46100 1.21905 1.39327 1.30980 1.21217 0.88129 1.01411 0.86449 0.88726 1.22096 1.02329 1.00620 0.96814 1.21610 0.93170 0.98871 0.87470 1.46000 1.15230 1.53809 1.24425 1.20315 0.80791 0.80460 0.86602 1.90708 1.51575 1.37436 1.59368 1.23531 1.06963 1.03571 0.96363 1.85385 1.03303 1.66109 1.28551 1.22914 1.02067 1.35523 1.07807 0.90869 1.24996 0.94894 0.95392 0.98332 1.70032 1.03719 1.37918 1.38611 0.86116 0.78322 0.79220 0.81841 1.19615 1.20566 1.20570 1.77425 0.95654 1.12370 1.22777 1.46343 1.04153 1.08245 1.59620 0.71959 0.90110 0.91110 0.89556 0.83547 0.86788 0.86893 0.76187 0.91680 0.91169 0.91999 0.90888 0.90052 0.76661 0.89227 0.89223 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.32 10.43 36.00 0.38 0.05 16 2 C 0.08 0.61 7.21 -82.27 -0.59 0.02 16 3 C -0.27 -2.25 10.64 -40.01 -0.43 -2.68 16 4 C 0.09 0.90 6.01 -82.41 -0.50 0.41 16 5 C -0.06 -0.46 6.28 -29.03 -0.18 -0.65 16 6 C 0.52 5.14 7.78 -10.98 -0.09 5.05 16 7 O -0.52 -7.46 15.24 5.56 0.08 -7.37 16 8 N -0.73 -5.73 4.52 -53.80 -0.24 -5.97 16 9 C 0.13 1.18 2.73 -67.93 -0.19 1.00 16 10 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 11 C -0.16 -1.27 9.48 37.16 0.35 -0.91 16 12 C 0.11 1.20 5.23 -4.04 -0.02 1.18 16 13 N -0.74 -9.39 5.39 -60.30 -0.32 -9.72 16 14 C 0.53 9.63 7.85 -10.99 -0.09 9.55 16 15 O -0.52 -11.42 15.86 5.56 0.09 -11.33 16 16 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 17 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 18 C -0.53 -15.23 9.50 30.94 0.29 -14.93 16 19 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 20 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 22 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 N -0.26 -3.18 12.06 33.67 0.41 -2.78 16 27 N -0.47 -4.24 7.36 33.47 0.25 -3.99 16 28 H 0.44 2.61 8.96 -182.60 -1.64 0.98 16 29 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.11 0.50 8.12 -51.93 -0.42 0.08 16 34 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.40 2.39 8.60 -40.82 -0.35 2.04 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.40 4.32 8.14 -40.82 -0.33 3.99 16 42 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 43 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 44 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -39.57 395.01 -8.97 -48.54 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -7.75 Total: 2.23 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: -0.93 Total: -2.76 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.82 Total: -47.85 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: 0.17 Total: -18.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -39.57 -8.97 -48.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579327840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.253 kcal (2) G-P(sol) polarization free energy of solvation -39.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds