Wall clock time and date at job start Sat Apr 11 2020 05:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35317 * 126.13060 * 2 1 4 4 C 1.39867 * 107.92220 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.89897 * 179.97438 * 4 3 2 6 6 C 1.50703 * 109.47042 * 125.00044 * 5 4 3 7 7 O 1.21279 * 120.00024 * 359.97438 * 6 5 4 8 8 N 1.34778 * 119.99935 * 180.02562 * 6 5 4 9 9 C 1.46499 * 119.99771 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47391 * 34.99730 * 9 8 6 11 11 C 1.53002 * 109.46799 * 274.99826 * 9 8 6 12 12 C 1.53000 * 109.46840 * 155.00060 * 9 8 6 13 13 N 1.46504 * 109.47054 * 304.99499 * 12 9 8 14 14 C 1.34777 * 120.00071 * 180.02562 * 13 12 9 15 15 O 1.21281 * 119.99830 * 0.02562 * 14 13 12 16 16 C 1.50692 * 120.00142 * 180.02562 * 14 13 12 17 17 S 1.81002 * 109.47076 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99786 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00495 * 0.02562 * 18 17 16 20 20 C 1.38800 * 120.00098 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99583 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00303 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46781 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.46685 * 120.00530 * 22 20 18 25 25 H 1.48496 * 109.47112 * 240.00327 * 22 20 18 26 26 N 1.30833 * 108.20109 * 0.26399 * 4 3 2 27 27 N 1.34944 * 126.12595 * 180.02562 * 2 1 3 28 28 H 0.97007 * 126.03608 * 359.96538 * 27 2 1 29 29 H 1.09001 * 109.47266 * 89.99807 * 1 2 3 30 30 H 1.08990 * 109.47440 * 209.99716 * 1 2 3 31 31 H 1.09003 * 109.47039 * 330.00567 * 1 2 3 32 32 H 1.07998 * 126.03507 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47190 * 5.00164 * 5 4 3 34 34 H 1.08995 * 109.47434 * 245.00148 * 5 4 3 35 35 H 0.96998 * 119.99599 * 359.97438 * 8 6 5 36 36 H 1.08996 * 109.47407 * 60.00500 * 11 9 8 37 37 H 1.09000 * 109.46986 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47075 * 299.99543 * 11 9 8 39 39 H 1.08991 * 109.47625 * 64.99762 * 12 9 8 40 40 H 1.09002 * 109.46642 * 184.99913 * 12 9 8 41 41 H 0.97000 * 119.99700 * 0.02562 * 13 12 9 42 42 H 1.09001 * 109.47456 * 300.00106 * 16 14 13 43 43 H 1.09002 * 109.47145 * 60.00200 * 16 14 13 44 44 H 0.97009 * 119.99727 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 3.6335 0.6559 -0.0006 5 6 4.8543 1.5394 -0.0013 6 6 5.7396 1.1738 1.1622 7 8 5.4113 0.2839 1.9178 8 7 6.8958 1.8366 1.3635 9 6 7.7566 1.4809 2.4942 10 1 7.7049 0.4057 2.6662 11 6 7.2844 2.2210 3.7473 12 6 9.2005 1.8784 2.1808 13 7 9.6128 1.2635 0.9166 14 6 10.8547 1.4751 0.4378 15 8 11.6311 2.1742 1.0537 16 6 11.2787 0.8431 -0.8629 17 16 12.9868 1.3133 -1.2336 18 6 13.2146 0.4608 -2.7588 19 1 12.4093 -0.1267 -3.1746 20 6 14.4286 0.5450 -3.4263 21 7 15.4098 1.2614 -2.9198 22 14 14.6704 -0.3593 -5.0429 23 1 13.4249 -1.0879 -5.3935 24 1 14.9897 0.6184 -6.1140 25 1 15.7886 -1.3268 -4.9064 26 7 3.6333 -0.6524 -0.0067 27 7 2.3026 -1.0900 -0.0005 28 1 2.0054 -2.0134 -0.0004 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5137 31 1 -0.3633 0.8901 0.5138 32 1 1.9741 2.1210 0.0004 33 1 4.5485 2.5818 0.0882 34 1 5.4028 1.4005 -0.9329 35 1 7.1581 2.5486 0.7593 36 1 6.2559 1.9378 3.9706 37 1 7.9252 1.9567 4.5885 38 1 7.3362 3.2962 3.5754 39 1 9.2686 2.9629 2.0965 40 1 9.8541 1.5345 2.9823 41 1 8.9919 0.7041 0.4242 42 1 11.2100 -0.2416 -0.7792 43 1 10.6252 1.1877 -1.6643 44 1 16.2584 1.3200 -3.3861 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579327840.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:15 Heat of formation + Delta-G solvation = -43.420173 kcal Electronic energy + Delta-G solvation = -25796.653163 eV Core-core repulsion = 21875.187498 eV Total energy + Delta-G solvation = -3921.465666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.20931 -41.01299 -40.29373 -37.45311 -34.79873 -34.57458 -34.32635 -32.71754 -32.11844 -30.82717 -29.31009 -27.80610 -27.73553 -26.80111 -23.30720 -21.80847 -21.68699 -21.41427 -20.59260 -19.82523 -18.41160 -18.08935 -17.78761 -17.58320 -16.89001 -16.84654 -16.39349 -16.24467 -15.87562 -15.63032 -15.15523 -14.81530 -14.61364 -14.52243 -14.31702 -14.20177 -13.95652 -13.79390 -13.69623 -13.46419 -13.25063 -13.15412 -13.06643 -12.91675 -12.90405 -12.75040 -12.58570 -12.04710 -11.70440 -11.48433 -11.15572 -10.98206 -10.91232 -10.26837 -10.25635 -10.16814 -10.10514 -9.49329 -8.65361 -8.34672 -6.11978 0.97732 1.27300 1.41159 1.46989 1.58190 1.61082 1.69413 1.72453 2.00801 2.20905 2.27698 2.37792 2.99556 3.32386 3.57913 3.61761 3.79683 3.96907 4.07623 4.08631 4.20904 4.27827 4.31206 4.46253 4.52410 4.56228 4.60117 4.73695 4.76560 4.78232 4.80204 4.88647 5.00751 5.12100 5.24027 5.28822 5.39711 5.42769 5.50721 5.72112 6.20403 6.44363 6.47922 6.57401 6.79152 7.07108 7.21506 7.30768 8.74646 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012482 B = 0.002039 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.730272 B =13726.761148 C =15627.177255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.085 3.915 3 C -0.286 4.286 4 C 0.073 3.927 5 C -0.060 4.060 6 C 0.518 3.482 7 O -0.570 6.570 8 N -0.717 5.717 9 C 0.143 3.857 10 H 0.078 0.922 11 C -0.154 4.154 12 C 0.117 3.883 13 N -0.713 5.713 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.132 4.132 17 S -0.147 6.147 18 C -0.546 4.546 19 H 0.081 0.919 20 C 0.014 3.986 21 N -0.910 5.910 22 Si 0.997 3.003 23 H -0.258 1.258 24 H -0.273 1.273 25 H -0.275 1.275 26 N -0.316 5.316 27 N -0.479 5.479 28 H 0.444 0.556 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.169 0.831 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.416 0.584 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.412 0.588 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.390 1.315 6.693 34.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 C -0.314 4.314 4 C -0.094 4.094 5 C -0.101 4.101 6 C 0.305 3.695 7 O -0.448 6.448 8 N -0.371 5.371 9 C 0.038 3.962 10 H 0.096 0.904 11 C -0.213 4.213 12 C -0.007 4.007 13 N -0.367 5.367 14 C 0.323 3.677 15 O -0.439 6.439 16 C -0.283 4.283 17 S 0.081 5.919 18 C -0.694 4.694 19 H 0.099 0.901 20 C -0.191 4.191 21 N -0.547 5.547 22 Si 0.819 3.181 23 H -0.182 1.182 24 H -0.198 1.198 25 H -0.200 1.200 26 N -0.140 5.140 27 N -0.189 5.189 28 H 0.289 0.711 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.117 0.883 32 H 0.186 0.814 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.253 0.747 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.248 0.752 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -31.467 0.868 8.261 32.545 hybrid contribution -0.940 -1.115 -1.839 2.347 sum -32.407 -0.247 6.423 33.038 Atomic orbital electron populations 1.20588 0.84380 1.05168 1.04638 1.21776 0.96335 0.87121 0.99194 1.21466 0.90841 1.00608 1.18534 1.21991 0.96074 0.91484 0.99849 1.20204 0.90947 1.00698 0.98210 1.20814 0.81597 0.80904 0.86182 1.90742 1.73311 1.32114 1.48596 1.45989 1.21176 1.39207 1.30724 1.21032 0.87188 1.00604 0.87366 0.90412 1.22038 1.01593 1.01263 0.96357 1.21726 0.93905 0.99145 0.85941 1.45733 1.13433 1.52783 1.24786 1.19972 0.81906 0.80009 0.85835 1.90702 1.53225 1.39622 1.60371 1.23383 1.02119 1.04508 0.98295 1.85526 1.09947 1.67224 1.29250 1.23240 1.02656 1.35563 1.07971 0.90056 1.26104 0.94440 0.96140 1.02422 1.70186 1.04385 1.39550 1.40538 0.84924 0.78682 0.77866 0.76596 1.18192 1.19781 1.20039 1.77327 0.97647 1.13791 1.25190 1.46412 1.03653 1.09187 1.59683 0.71074 0.88711 0.89974 0.88280 0.81352 0.83376 0.85330 0.74665 0.92863 0.90463 0.90576 0.90024 0.90488 0.75165 0.87801 0.86985 0.91988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.42 10.43 71.24 0.74 0.32 16 2 C 0.08 1.16 7.21 41.41 0.30 1.46 16 3 C -0.29 -4.41 10.64 21.99 0.23 -4.18 16 4 C 0.07 1.45 6.01 43.10 0.26 1.71 16 5 C -0.06 -0.78 6.28 29.10 0.18 -0.59 16 6 C 0.52 9.66 7.78 87.66 0.68 10.34 16 7 O -0.57 -16.31 15.24 -3.03 -0.05 -16.36 16 8 N -0.72 -9.87 4.52 -442.53 -2.00 -11.87 16 9 C 0.14 2.35 2.73 44.99 0.12 2.48 16 10 H 0.08 1.61 7.58 -2.39 -0.02 1.60 16 11 C -0.15 -2.20 9.48 71.98 0.68 -1.52 16 12 C 0.12 2.28 5.23 86.38 0.45 2.73 16 13 N -0.71 -16.83 5.39 -463.07 -2.50 -19.33 16 14 C 0.54 18.93 7.85 87.65 0.69 19.62 16 15 O -0.56 -24.88 15.86 -3.03 -0.05 -24.92 16 16 C -0.13 -5.13 6.16 71.23 0.44 -4.69 16 17 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 18 C -0.55 -31.14 9.50 67.95 0.65 -30.50 16 19 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 20 C 0.01 0.78 5.49 84.86 0.47 1.25 16 21 N -0.91 -55.70 13.22 21.65 0.29 -55.41 16 22 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 N -0.32 -7.80 12.06 -47.39 -0.57 -8.38 16 27 N -0.48 -8.46 7.36 -48.01 -0.35 -8.81 16 28 H 0.44 5.37 8.96 -213.32 -1.91 3.45 16 29 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.17 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.15 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.42 3.74 8.60 -92.71 -0.80 2.95 16 36 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.41 7.95 8.14 -92.71 -0.75 7.20 16 42 H 0.10 3.75 8.14 -2.39 -0.02 3.73 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 Total: -1.00 -89.18 395.01 -0.88 -90.06 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -2.41 Total: 20.12 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.90 Total: -1.57 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -5.13 Total: -103.80 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -0.09 Total: -41.28 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -89.18 -0.88 -90.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579327840.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.641 kcal (2) G-P(sol) polarization free energy of solvation -89.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds