Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35362 * 127.24841 * 2 1 4 4 N 1.35038 * 107.23276 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.88897 * 180.02562 * 4 3 2 6 6 N 1.28470 * 110.22468 * 359.72169 * 4 3 2 7 7 C 1.31810 * 110.07583 * 0.45974 * 6 4 3 8 8 C 1.47712 * 126.51651 * 179.81714 * 7 6 4 9 9 O 1.21569 * 119.99572 * 185.43404 * 8 7 6 10 10 N 1.34774 * 120.00048 * 5.43583 * 8 7 6 11 11 C 1.46498 * 120.00180 * 5.32556 * 10 8 7 12 12 C 1.46507 * 119.99540 * 185.32232 * 10 8 7 13 13 C 1.53004 * 109.47107 * 270.00091 * 12 10 8 14 14 N 1.46497 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.46498 * 119.99935 * 269.99412 * 14 13 12 16 16 C 1.34779 * 120.00377 * 90.00425 * 14 13 12 17 17 O 1.21285 * 119.99521 * 359.97438 * 16 14 13 18 18 C 1.50695 * 120.00181 * 179.97438 * 16 14 13 19 19 S 1.81004 * 109.46960 * 179.97438 * 18 16 14 20 20 C 1.76198 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.08009 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00206 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47231 * 89.99992 * 24 22 20 26 26 H 1.48499 * 109.47322 * 209.99677 * 24 22 20 27 27 H 1.48499 * 109.47327 * 329.99885 * 24 22 20 28 28 H 1.08998 * 109.46983 * 269.99929 * 1 2 3 29 29 H 1.08998 * 109.47030 * 30.00239 * 1 2 3 30 30 H 1.09007 * 109.47014 * 149.99797 * 1 2 3 31 31 H 1.07998 * 126.38865 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47072 * 275.28268 * 11 10 8 33 33 H 1.08995 * 109.47034 * 35.28914 * 11 10 8 34 34 H 1.09001 * 109.46951 * 155.28264 * 11 10 8 35 35 H 1.08999 * 109.47357 * 30.00108 * 12 10 8 36 36 H 1.08999 * 109.46473 * 150.00642 * 12 10 8 37 37 H 1.08999 * 109.47026 * 300.00220 * 13 12 10 38 38 H 1.09001 * 109.46839 * 60.00360 * 13 12 10 39 39 H 1.09006 * 109.47055 * 90.00334 * 15 14 13 40 40 H 1.08999 * 109.47827 * 210.00117 * 15 14 13 41 41 H 1.09007 * 109.47405 * 330.00840 * 15 14 13 42 42 H 1.08998 * 109.46931 * 299.99581 * 18 16 14 43 43 H 1.08994 * 109.47286 * 59.99718 * 18 16 14 44 44 H 0.97001 * 119.99677 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1730 -0.0004 6 7 3.5998 -0.6694 0.0049 7 6 2.3635 -1.1264 -0.0005 8 6 1.9506 -2.5446 -0.0008 9 8 0.7749 -2.8354 -0.1059 10 7 2.8773 -3.5163 0.1156 11 6 4.2789 -3.1664 0.3592 12 6 2.4829 -4.9224 -0.0015 13 6 2.1117 -5.4647 1.3802 14 7 1.7179 -6.8709 1.2631 15 6 0.3165 -7.2213 1.0195 16 6 2.6449 -7.8423 1.3798 17 8 3.8052 -7.5522 1.5812 18 6 2.2397 -9.2888 1.2599 19 16 3.6978 -10.3423 1.4601 20 6 2.9554 -11.9300 1.2789 21 1 1.8931 -12.0123 1.1018 22 6 3.7355 -13.0747 1.3638 23 7 3.1808 -14.2608 1.2290 24 14 5.5728 -12.9323 1.6694 25 1 5.8341 -12.9459 3.1312 26 1 6.2711 -14.0770 1.0311 27 1 6.0741 -11.6607 1.0888 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.0220 2.1137 0.0004 32 1 4.7696 -2.9503 -0.5898 33 1 4.3275 -2.2875 1.0019 34 1 4.7823 -4.0013 0.8467 35 1 1.6236 -5.0046 -0.6670 36 1 3.3134 -5.5000 -0.4073 37 1 2.9710 -5.3825 2.0457 38 1 1.2812 -4.8870 1.7861 39 1 0.1356 -7.2705 -0.0543 40 1 0.1007 -8.1905 1.4691 41 1 -0.3299 -6.4634 1.4623 42 1 1.5099 -9.5270 2.0337 43 1 1.7984 -9.4624 0.2785 44 1 3.7260 -15.0608 1.2886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582936648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = 19.446907 kcal Electronic energy + Delta-G solvation = -26591.430761 eV Core-core repulsion = 22672.691216 eV Total energy + Delta-G solvation = -3918.739544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.09461 -40.01234 -39.27574 -36.20211 -35.16404 -33.41403 -32.42250 -32.10208 -30.68544 -28.60638 -27.56536 -26.97505 -26.36482 -25.60983 -24.47899 -22.66577 -21.01678 -19.44967 -19.27390 -18.43636 -17.67343 -17.18923 -16.78144 -16.40996 -16.35453 -15.74815 -15.39696 -14.95691 -14.78425 -14.37899 -13.85325 -13.67614 -13.56690 -13.39282 -13.33255 -13.19949 -13.05361 -12.96663 -12.77332 -12.72525 -12.48022 -12.25133 -12.14327 -11.96061 -11.25224 -11.07559 -11.00692 -10.98242 -10.57281 -10.23438 -9.84667 -9.81832 -9.48976 -9.30017 -9.10937 -8.98789 -8.48131 -8.42756 -6.90255 -6.27294 -3.98909 1.21050 1.68995 2.35820 2.61899 2.87268 2.96155 3.11074 3.31044 3.34899 3.51514 3.63660 4.01240 4.34350 4.35598 4.59849 4.66593 4.87153 4.92454 5.00835 5.10405 5.11529 5.12639 5.15607 5.24927 5.40076 5.44799 5.48228 5.50446 5.54785 5.67560 5.72725 5.74809 5.80252 5.82448 5.93139 6.04576 6.13838 6.21173 6.53002 6.62422 7.10427 7.41056 7.45951 7.92918 7.95771 8.43294 8.44048 9.18908 10.81892 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.002026 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.414123 B =13814.306989 C =14623.621014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.145 4.145 3 C -0.021 4.021 4 N -0.385 5.385 5 H 0.447 0.553 6 N -0.253 5.253 7 C -0.011 4.011 8 C 0.600 3.400 9 O -0.529 6.529 10 N -0.600 5.600 11 C 0.081 3.919 12 C 0.103 3.897 13 C 0.106 3.894 14 N -0.620 5.620 15 C 0.079 3.921 16 C 0.532 3.468 17 O -0.519 6.519 18 C -0.121 4.121 19 S -0.144 6.144 20 C -0.520 4.520 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.184 0.816 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 33.507 -2.689 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.155 4.155 3 C -0.165 4.165 4 N -0.098 5.098 5 H 0.291 0.709 6 N -0.089 5.089 7 C -0.172 4.172 8 C 0.387 3.613 9 O -0.404 6.404 10 N -0.333 5.333 11 C -0.062 4.062 12 C -0.021 4.021 13 C -0.018 4.018 14 N -0.356 5.356 15 C -0.064 4.064 16 C 0.319 3.681 17 O -0.393 6.393 18 C -0.271 4.271 19 S 0.082 5.918 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.103 0.897 31 H 0.201 0.799 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.258 33.177 -2.452 33.291 hybrid contribution -0.898 0.109 -0.131 0.914 sum -2.156 33.286 -2.583 33.455 Atomic orbital electron populations 1.20209 0.87970 1.03309 1.02480 1.20413 0.97681 0.90375 1.07040 1.22722 0.84176 1.00599 1.08966 1.43356 1.08625 1.04668 1.53163 0.70897 1.73785 1.22886 0.93482 1.18782 1.21836 0.89522 0.95035 1.10788 1.16976 0.85089 0.82653 0.76604 1.90767 1.16754 1.82437 1.50402 1.47640 1.09022 1.05931 1.70699 1.22021 0.80233 1.01951 1.01971 1.21933 1.02149 0.79660 0.98372 1.21715 1.01797 0.81072 0.97245 1.47764 1.08778 1.05501 1.73522 1.21847 0.80999 1.02090 1.01512 1.20352 0.85200 0.87068 0.75449 1.90681 1.18155 1.83353 1.47132 1.23314 1.04642 0.93504 1.05660 1.84760 1.10522 1.01351 1.95160 1.22312 0.98311 0.89177 1.56972 0.89373 1.24715 0.99073 0.94194 0.93368 1.69943 1.36536 0.97440 1.47770 0.86730 0.85022 0.80143 0.79918 1.19239 1.19984 1.15932 0.91409 0.91911 0.89675 0.79923 0.92249 0.89866 0.90656 0.89568 0.89579 0.89778 0.90260 0.92444 0.90479 0.91034 0.88471 0.88406 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.98 36.00 0.36 -0.27 16 2 C -0.14 -1.25 6.25 -104.41 -0.65 -1.90 16 3 C -0.02 -0.11 11.97 -17.17 -0.21 -0.31 16 4 N -0.38 -2.02 6.83 30.47 0.21 -1.81 16 5 H 0.45 0.61 8.96 -190.44 -1.71 -1.09 16 6 N -0.25 -2.20 8.99 33.42 0.30 -1.90 16 7 C -0.01 -0.12 6.76 -82.76 -0.56 -0.68 16 8 C 0.60 7.48 7.67 -12.39 -0.09 7.38 16 9 O -0.53 -7.60 14.72 5.31 0.08 -7.52 16 10 N -0.60 -6.93 2.87 -182.74 -0.53 -7.46 16 11 C 0.08 0.78 9.32 59.85 0.56 1.34 16 12 C 0.10 1.26 5.67 -4.04 -0.02 1.23 16 13 C 0.11 1.36 5.78 -4.04 -0.02 1.34 16 14 N -0.62 -8.74 2.87 -181.57 -0.52 -9.26 16 15 C 0.08 0.86 10.28 59.85 0.62 1.48 16 16 C 0.53 9.68 7.69 -10.99 -0.08 9.60 16 17 O -0.52 -11.08 15.44 5.55 0.09 -10.99 16 18 C -0.12 -2.37 4.71 36.00 0.17 -2.20 16 19 S -0.14 -3.68 18.55 -107.50 -1.99 -5.67 16 20 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 21 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.63 13.97 55.49 0.78 -25.86 16 24 Si 0.86 21.86 27.74 -169.99 -4.71 17.15 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.83 6.63 -51.92 -0.34 0.49 16 31 H 0.18 0.27 8.06 -52.49 -0.42 -0.15 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.77 5.92 -51.93 -0.31 0.46 16 34 H 0.07 0.73 8.03 -51.93 -0.42 0.32 16 35 H 0.09 1.09 7.50 -51.93 -0.39 0.70 16 36 H 0.09 1.12 8.07 -51.93 -0.42 0.71 16 37 H 0.08 1.18 7.42 -51.93 -0.39 0.79 16 38 H 0.08 0.95 7.89 -51.93 -0.41 0.54 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 41 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 42 H 0.10 1.79 7.40 -51.92 -0.38 1.40 16 43 H 0.10 1.80 8.11 -51.92 -0.42 1.38 16 44 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -36.93 381.79 -7.90 -44.83 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.62 Total: -2.24 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 0.27 Total: 4.98 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.24 Total: -46.28 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.16 Total: -18.51 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -1.99 Total: -5.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.93 -7.90 -44.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582936648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.275 kcal (2) G-P(sol) polarization free energy of solvation -36.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds