Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35362 * 127.24841 * 2 1 4 4 N 1.35038 * 107.23276 * 180.02562 * 3 2 1 5 5 H 0.96997 * 124.88897 * 180.02562 * 4 3 2 6 6 N 1.28470 * 110.22468 * 359.72169 * 4 3 2 7 7 C 1.31810 * 110.07583 * 0.45974 * 6 4 3 8 8 C 1.47712 * 126.51651 * 179.81714 * 7 6 4 9 9 O 1.21569 * 119.99572 * 185.43404 * 8 7 6 10 10 N 1.34774 * 120.00048 * 5.43583 * 8 7 6 11 11 C 1.46498 * 120.00180 * 5.32556 * 10 8 7 12 12 C 1.46507 * 119.99540 * 185.32232 * 10 8 7 13 13 C 1.53004 * 109.47107 * 270.00091 * 12 10 8 14 14 N 1.46497 * 109.46708 * 180.02562 * 13 12 10 15 15 C 1.46498 * 119.99935 * 269.99412 * 14 13 12 16 16 C 1.34779 * 120.00377 * 90.00425 * 14 13 12 17 17 O 1.21285 * 119.99521 * 359.97438 * 16 14 13 18 18 C 1.50695 * 120.00181 * 179.97438 * 16 14 13 19 19 S 1.81004 * 109.46960 * 179.97438 * 18 16 14 20 20 C 1.76198 * 99.99856 * 180.02562 * 19 18 16 21 21 H 1.08009 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00215 * 179.97438 * 20 19 18 23 23 N 1.31634 * 120.00206 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99814 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47231 * 89.99992 * 24 22 20 26 26 H 1.48499 * 109.47322 * 209.99677 * 24 22 20 27 27 H 1.48499 * 109.47327 * 329.99885 * 24 22 20 28 28 H 1.08998 * 109.46983 * 269.99929 * 1 2 3 29 29 H 1.08998 * 109.47030 * 30.00239 * 1 2 3 30 30 H 1.09007 * 109.47014 * 149.99797 * 1 2 3 31 31 H 1.07998 * 126.38865 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47072 * 275.28268 * 11 10 8 33 33 H 1.08995 * 109.47034 * 35.28914 * 11 10 8 34 34 H 1.09001 * 109.46951 * 155.28264 * 11 10 8 35 35 H 1.08999 * 109.47357 * 30.00108 * 12 10 8 36 36 H 1.08999 * 109.46473 * 150.00642 * 12 10 8 37 37 H 1.08999 * 109.47026 * 300.00220 * 13 12 10 38 38 H 1.09001 * 109.46839 * 60.00360 * 13 12 10 39 39 H 1.09006 * 109.47055 * 90.00334 * 15 14 13 40 40 H 1.08999 * 109.47827 * 210.00117 * 15 14 13 41 41 H 1.09007 * 109.47405 * 330.00840 * 15 14 13 42 42 H 1.08998 * 109.46931 * 299.99581 * 18 16 14 43 43 H 1.08994 * 109.47286 * 59.99718 * 18 16 14 44 44 H 0.97001 * 119.99677 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.0775 0.0000 4 7 3.5951 0.6153 -0.0006 5 1 4.3887 1.1730 -0.0004 6 7 3.5998 -0.6694 0.0049 7 6 2.3635 -1.1264 -0.0005 8 6 1.9506 -2.5446 -0.0008 9 8 0.7749 -2.8354 -0.1059 10 7 2.8773 -3.5163 0.1156 11 6 4.2789 -3.1664 0.3592 12 6 2.4829 -4.9224 -0.0015 13 6 2.1117 -5.4647 1.3802 14 7 1.7179 -6.8709 1.2631 15 6 0.3165 -7.2213 1.0195 16 6 2.6449 -7.8423 1.3798 17 8 3.8052 -7.5522 1.5812 18 6 2.2397 -9.2888 1.2599 19 16 3.6978 -10.3423 1.4601 20 6 2.9554 -11.9300 1.2789 21 1 1.8931 -12.0123 1.1018 22 6 3.7355 -13.0747 1.3638 23 7 3.1808 -14.2608 1.2290 24 14 5.5728 -12.9323 1.6694 25 1 5.8341 -12.9459 3.1312 26 1 6.2711 -14.0770 1.0311 27 1 6.0741 -11.6607 1.0888 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 2.0220 2.1137 0.0004 32 1 4.7696 -2.9503 -0.5898 33 1 4.3275 -2.2875 1.0019 34 1 4.7823 -4.0013 0.8467 35 1 1.6236 -5.0046 -0.6670 36 1 3.3134 -5.5000 -0.4073 37 1 2.9710 -5.3825 2.0457 38 1 1.2812 -4.8870 1.7861 39 1 0.1356 -7.2705 -0.0543 40 1 0.1007 -8.1905 1.4691 41 1 -0.3299 -6.4634 1.4623 42 1 1.5099 -9.5270 2.0337 43 1 1.7984 -9.4624 0.2785 44 1 3.7260 -15.0608 1.2886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582936648.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = -6.349480 kcal Electronic energy + Delta-G solvation = -26592.549376 eV Core-core repulsion = 22672.691216 eV Total energy + Delta-G solvation = -3919.858160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.64905 -41.14444 -40.43807 -37.29294 -36.31073 -34.66477 -33.98634 -32.91039 -31.75012 -29.87406 -28.17310 -27.86763 -27.85662 -27.27592 -25.45836 -23.54784 -21.58385 -20.74817 -20.21445 -19.57329 -18.95497 -18.26822 -17.85917 -17.54898 -17.25121 -17.09831 -16.76781 -16.58493 -15.86510 -15.57054 -15.24162 -14.90398 -14.56085 -14.54519 -14.30058 -14.14119 -14.10097 -13.97637 -13.74291 -13.63537 -13.44130 -13.37027 -13.29335 -13.17503 -13.00459 -12.79939 -12.64534 -12.05428 -11.85785 -11.69532 -11.16490 -11.15610 -10.95720 -10.52511 -10.40964 -10.21531 -9.78832 -9.50835 -8.99448 -8.50751 -6.21717 0.49152 0.96861 1.18447 1.31901 1.42263 1.48486 1.52683 1.72135 2.07995 2.25327 2.28443 2.31441 2.69147 2.87332 3.32587 3.54071 3.81009 3.95968 3.98956 4.11934 4.15104 4.25326 4.30510 4.37658 4.45546 4.49568 4.58586 4.58915 4.64516 4.68867 4.86160 4.92131 4.93283 4.94106 5.05766 5.21451 5.28179 5.52617 5.54587 5.71503 6.12001 6.12443 6.18885 6.29097 6.82176 6.94229 7.03049 7.07018 8.61541 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028728 B = 0.002026 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.414123 B =13814.306989 C =14623.621014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.175 4.175 3 C 0.007 3.993 4 N -0.366 5.366 5 H 0.465 0.535 6 N -0.264 5.264 7 C -0.044 4.044 8 C 0.595 3.405 9 O -0.557 6.557 10 N -0.602 5.602 11 C 0.086 3.914 12 C 0.111 3.889 13 C 0.113 3.887 14 N -0.607 5.607 15 C 0.071 3.929 16 C 0.534 3.466 17 O -0.556 6.556 18 C -0.107 4.107 19 S -0.174 6.174 20 C -0.528 4.528 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.916 5.916 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.259 1.259 27 H -0.236 1.236 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.056 0.944 31 H 0.228 0.772 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 36.598 -2.691 36.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.186 4.186 3 C -0.138 4.138 4 N -0.082 5.082 5 H 0.313 0.687 6 N -0.103 5.103 7 C -0.203 4.203 8 C 0.383 3.617 9 O -0.434 6.434 10 N -0.334 5.334 11 C -0.056 4.056 12 C -0.013 4.013 13 C -0.012 4.012 14 N -0.341 5.341 15 C -0.071 4.071 16 C 0.321 3.679 17 O -0.434 6.434 18 C -0.257 4.257 19 S 0.053 5.947 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.554 5.554 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.160 1.160 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.245 0.755 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.112 0.888 42 H 0.130 0.870 43 H 0.130 0.870 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.930 36.292 -2.461 36.387 hybrid contribution -1.130 -0.665 -0.156 1.320 sum -2.060 35.627 -2.617 35.783 Atomic orbital electron populations 1.20144 0.87850 1.03123 1.02374 1.20700 0.98287 0.90843 1.08735 1.23290 0.83167 1.01663 1.05683 1.43498 1.09778 1.03882 1.51088 0.68690 1.73692 1.22159 0.95125 1.19288 1.21713 0.90838 0.94453 1.13301 1.17338 0.84778 0.83667 0.75941 1.90734 1.17801 1.83098 1.51780 1.47709 1.09707 1.05463 1.70541 1.22041 0.79208 1.02006 1.02342 1.21740 1.01599 0.80273 0.97732 1.21734 1.01779 0.80186 0.97457 1.47738 1.09424 1.05282 1.71646 1.22124 0.79187 1.03080 1.02742 1.20054 0.85219 0.86968 0.75633 1.90668 1.19702 1.83684 1.49352 1.23288 1.01981 0.93424 1.07042 1.84663 1.14144 1.00596 1.95343 1.22453 0.97391 0.91241 1.56515 0.91950 1.25571 1.03357 0.93940 0.93191 1.70021 1.38344 0.98257 1.48805 0.85860 0.79965 0.80445 0.80053 1.18705 1.18357 1.16013 0.91489 0.89410 0.92483 0.75527 0.91719 0.89210 0.90991 0.89861 0.90532 0.90947 0.89053 0.91108 0.90102 0.88800 0.86964 0.86981 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.98 71.23 0.71 -0.40 16 2 C -0.18 -2.74 6.25 -19.72 -0.12 -2.86 16 3 C 0.01 0.05 11.97 83.54 1.00 1.05 16 4 N -0.37 -2.77 6.83 -57.51 -0.39 -3.16 16 5 H 0.46 -0.31 8.96 -219.99 -1.97 -2.28 16 6 N -0.26 -4.19 8.99 -48.17 -0.43 -4.62 16 7 C -0.04 -0.91 6.76 42.46 0.29 -0.62 16 8 C 0.59 14.90 7.67 86.75 0.66 15.56 16 9 O -0.56 -16.31 14.72 -3.93 -0.06 -16.37 16 10 N -0.60 -13.91 2.87 -850.34 -2.44 -16.35 16 11 C 0.09 1.65 9.32 127.77 1.19 2.84 16 12 C 0.11 2.71 5.67 86.38 0.49 3.20 16 13 C 0.11 2.82 5.78 86.38 0.50 3.32 16 14 N -0.61 -16.42 2.87 -846.74 -2.43 -18.85 16 15 C 0.07 1.40 10.28 127.77 1.31 2.72 16 16 C 0.53 19.10 7.69 87.66 0.67 19.77 16 17 O -0.56 -23.75 15.44 -3.04 -0.05 -23.80 16 18 C -0.11 -4.12 4.71 71.23 0.34 -3.78 16 19 S -0.17 -8.86 18.55 -56.49 -1.05 -9.91 16 20 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 21 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 22 C 0.04 2.64 5.50 84.86 0.47 3.11 16 23 N -0.92 -56.03 13.97 21.65 0.30 -55.72 16 24 Si 0.91 45.20 27.74 68.60 1.90 47.10 16 25 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 26 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 27 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.14 6.63 -2.38 -0.02 1.13 16 31 H 0.23 -0.54 8.06 -2.91 -0.02 -0.57 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.60 5.92 -2.39 -0.01 1.58 16 34 H 0.07 1.40 8.03 -2.39 -0.02 1.39 16 35 H 0.08 2.09 7.50 -2.39 -0.02 2.07 16 36 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 37 H 0.07 2.02 7.42 -2.39 -0.02 2.01 16 38 H 0.09 2.11 7.89 -2.39 -0.02 2.09 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.08 1.58 6.44 -2.39 -0.02 1.56 16 41 H 0.09 1.50 7.89 -2.38 -0.02 1.48 16 42 H 0.11 4.01 7.40 -2.40 -0.02 3.99 16 43 H 0.11 4.02 8.11 -2.40 -0.02 4.00 16 44 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -81.66 381.79 2.56 -79.09 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -0.98 Total: 8.95 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: 8.19 Total: 13.64 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -5.40 Total: -98.71 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -0.10 Total: -40.17 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.90 Total: 47.10 kcal Atomic # 16 Polarization: -8.86 SS G_CDS: -1.05 Total: -9.91 kcal Total: -81.66 2.56 -79.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582936648.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.745 kcal (2) G-P(sol) polarization free energy of solvation -81.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds