Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 110.37407 * 2 1 4 4 O 1.20829 * 120.00121 * 240.73667 * 3 2 1 5 5 O 1.34234 * 120.00149 * 60.73551 * 3 2 1 6 6 C 1.54617 * 110.32595 * 237.81077 * 2 1 3 7 7 C 1.54601 * 102.91425 * 262.80787 * 6 2 1 8 8 N 1.48119 * 103.41730 * 322.86906 * 7 6 2 9 9 C 1.34787 * 127.02991 * 219.28161 * 8 7 6 10 10 O 1.21343 * 119.99684 * 179.68944 * 9 8 7 11 11 C 1.49454 * 119.99822 * 359.68866 * 9 8 7 12 12 O 1.21348 * 119.99885 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99725 * 180.02562 * 11 9 8 14 14 C 1.47423 * 125.64935 * 0.02562 * 13 11 9 15 15 C 1.54909 * 104.83351 * 155.83866 * 14 13 11 16 16 C 1.55158 * 101.61642 * 36.99324 * 15 14 13 17 17 O 1.42898 * 110.71953 * 82.87702 * 16 15 14 18 18 C 1.50695 * 110.72412 * 206.15548 * 16 15 14 19 19 H 1.08007 * 119.99897 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00476 * 179.97438 * 18 16 15 21 21 N 1.31518 * 119.99546 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00362 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47151 * 59.99831 * 22 20 18 24 24 H 1.48496 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47115 * 300.00274 * 22 20 18 26 26 C 1.47016 * 125.64624 * 179.97438 * 13 11 9 27 27 C 1.47482 * 105.93690 * 39.02361 * 8 7 6 28 28 H 1.08999 * 109.46861 * 299.26571 * 1 2 3 29 29 H 1.09008 * 109.46950 * 59.26340 * 1 2 3 30 30 H 1.09001 * 109.47763 * 179.26351 * 1 2 3 31 31 H 0.96691 * 117.00108 * 179.97438 * 5 3 2 32 32 H 1.09001 * 110.73959 * 21.29748 * 6 2 1 33 33 H 1.09007 * 110.74205 * 144.44130 * 6 2 1 34 34 H 1.08994 * 110.61875 * 204.35900 * 7 6 2 35 35 H 1.08993 * 110.54500 * 81.34675 * 7 6 2 36 36 H 1.09000 * 110.36544 * 37.00287 * 14 13 11 37 37 H 1.09002 * 110.37016 * 274.68213 * 14 13 11 38 38 H 1.09002 * 111.00594 * 155.08642 * 15 14 13 39 39 H 1.09002 * 111.00655 * 278.89906 * 15 14 13 40 40 H 0.96707 * 113.99877 * 179.97438 * 17 16 15 41 41 H 0.97004 * 119.99847 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.88531 * 300.50046 * 26 13 11 43 43 H 1.08996 * 109.88671 * 61.51859 * 26 13 11 44 44 H 1.09006 * 109.91272 * 94.13526 * 27 8 7 45 45 H 1.09003 * 109.91420 * 215.41837 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4127 0.0000 4 8 2.7444 1.8010 -0.9129 5 8 1.7555 2.2397 1.0141 6 6 2.0670 -0.7724 -1.2270 7 6 2.3640 -2.1753 -0.6493 8 7 2.8803 -1.8857 0.7084 9 6 3.8923 -2.5108 1.3424 10 8 4.2152 -2.1634 2.4593 11 6 4.6165 -3.6318 0.6697 12 8 4.2932 -3.9795 -0.4470 13 7 5.6281 -4.2571 1.3039 14 6 6.1213 -3.9396 2.6564 15 6 6.7904 -5.2460 3.1515 16 6 7.4413 -5.7773 1.8470 17 8 8.7027 -5.1462 1.6180 18 6 7.5947 -7.2755 1.8995 19 1 7.2666 -7.8218 2.7716 20 6 8.1539 -7.9491 0.8344 21 7 8.5539 -7.2840 -0.2274 22 14 8.3447 -9.8062 0.8998 23 1 7.0094 -10.4356 1.0611 24 1 8.9689 -10.2843 -0.3599 25 1 9.2079 -10.1749 2.0505 26 6 6.4216 -5.3697 0.7619 27 6 2.0649 -0.7693 1.2221 28 1 -0.3633 0.5024 0.8965 29 1 -0.3633 0.5253 -0.8834 30 1 -0.3635 -1.0275 -0.0132 31 1 2.1152 3.1362 0.9702 32 1 1.3105 -0.8276 -2.0098 33 1 2.9788 -0.3101 -1.6054 34 1 3.1194 -2.6847 -1.2475 35 1 1.4507 -2.7678 -0.5952 36 1 5.2913 -3.6677 3.3087 37 1 6.8517 -3.1316 2.6139 38 1 7.5467 -5.0354 3.9077 39 1 6.0465 -5.9468 3.5305 40 1 9.1513 -5.4439 0.8146 41 1 8.9470 -7.7579 -0.9769 42 1 5.7697 -6.2124 0.5315 43 1 6.9440 -5.0481 -0.1391 44 1 1.2329 -1.1571 1.8100 45 1 2.6808 -0.1109 1.8348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589187433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = -189.342656 kcal Electronic energy + Delta-G solvation = -30733.152123 eV Core-core repulsion = 26330.313161 eV Total energy + Delta-G solvation = -4402.838961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32568 -40.29537 -38.84040 -37.64115 -37.27189 -36.46325 -34.43573 -33.24676 -32.20431 -30.19511 -29.92601 -28.05851 -27.51586 -25.93127 -25.00850 -23.55445 -22.94436 -21.55000 -20.11898 -19.63751 -18.99052 -18.21461 -17.29132 -17.26021 -16.77057 -16.62029 -16.34655 -15.84034 -15.48261 -15.13023 -14.87887 -14.57704 -14.24681 -14.05791 -13.52819 -13.32492 -13.07110 -13.01313 -12.94027 -12.88029 -12.76318 -12.49247 -12.28783 -12.01170 -11.88227 -11.76454 -11.54719 -11.52016 -11.20953 -11.09477 -10.93571 -10.80119 -10.69009 -10.56490 -10.51594 -10.17665 -9.36512 -9.12668 -8.94306 -8.68658 -8.37144 -8.05454 -6.33340 -4.42045 1.69073 1.80647 2.33115 2.61092 3.20444 3.26067 3.28153 3.50214 3.64114 3.88488 4.13134 4.23729 4.36093 4.53489 4.81073 4.84748 4.94542 5.00233 5.13852 5.24314 5.34836 5.40200 5.47930 5.53578 5.59595 5.73501 5.81814 5.86958 5.88300 5.99109 6.06691 6.13050 6.27432 6.48688 6.74069 6.77669 6.81207 7.13675 7.17807 7.29031 7.50353 7.69197 7.70613 7.95661 7.98971 8.38038 8.61407 9.27103 9.40419 10.74436 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.002571 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.560653 B =10888.336868 C =11236.537813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 C 0.492 3.508 4 O -0.506 6.506 5 O -0.512 6.512 6 C -0.123 4.123 7 C 0.088 3.912 8 N -0.601 5.601 9 C 0.531 3.469 10 O -0.515 6.515 11 C 0.512 3.488 12 O -0.533 6.533 13 N -0.573 5.573 14 C 0.098 3.902 15 C -0.121 4.121 16 C 0.249 3.751 17 O -0.584 6.584 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.897 5.897 22 Si 0.906 3.094 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.274 1.274 26 C 0.098 3.902 27 C 0.120 3.880 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.412 0.588 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.386 0.614 41 H 0.272 0.728 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.073 14.431 0.564 21.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.071 4.071 3 C 0.333 3.667 4 O -0.393 6.393 5 O -0.324 6.324 6 C -0.161 4.161 7 C -0.034 4.034 8 N -0.337 5.337 9 C 0.315 3.685 10 O -0.390 6.390 11 C 0.294 3.706 12 O -0.412 6.412 13 N -0.304 5.304 14 C -0.024 4.024 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.394 6.394 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.536 5.536 22 Si 0.733 3.267 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.023 4.023 27 C -0.003 4.003 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.271 0.729 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.037 14.385 0.750 21.556 hybrid contribution 0.438 -0.515 -0.699 0.972 sum -15.599 13.870 0.052 20.874 Atomic orbital electron populations 1.21886 0.90025 1.03975 1.03458 1.21460 0.98556 0.88159 0.98884 1.23110 0.76824 0.87948 0.78792 1.90736 1.35563 1.76674 1.36304 1.84519 1.72215 1.28122 1.47561 1.22915 1.03384 0.94650 0.95184 1.23045 1.01557 0.96232 0.82564 1.48508 1.32555 1.34098 1.18496 1.20129 0.79352 0.83466 0.85567 1.90713 1.64833 1.64840 1.18635 1.19373 0.81560 0.83669 0.85999 1.90611 1.66135 1.65672 1.18828 1.48679 1.30294 1.33510 1.17932 1.22661 0.98911 0.98465 0.82396 1.22831 0.99259 0.95041 0.98747 1.19490 0.80817 0.90960 0.87901 1.86099 1.34776 1.68543 1.50001 1.21496 1.41775 0.91154 1.03117 0.91387 1.25090 0.93957 0.99524 0.94729 1.69565 1.41044 1.36647 1.06345 0.86419 0.78601 0.84114 0.77545 1.19998 1.21047 1.19939 1.23307 0.93574 0.85879 0.99502 1.22046 0.95578 0.88461 0.94182 0.90761 0.91388 0.90263 0.72932 0.88682 0.88711 0.85675 0.90333 0.89524 0.91307 0.90251 0.90489 0.76200 0.91779 0.90908 0.91134 0.89377 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.17 37.15 0.30 -0.46 16 2 C -0.07 -0.59 0.91 -154.29 -0.14 -0.73 16 3 C 0.49 4.81 6.75 36.00 0.24 5.06 16 4 O -0.51 -6.56 16.20 -18.75 -0.30 -6.86 16 5 O -0.51 -3.64 13.30 -39.27 -0.52 -4.16 16 6 C -0.12 -1.16 5.94 -25.04 -0.15 -1.31 16 7 C 0.09 1.00 6.60 -2.31 -0.02 0.99 16 8 N -0.60 -8.18 3.29 -170.48 -0.56 -8.74 16 9 C 0.53 9.12 7.92 -11.58 -0.09 9.03 16 10 O -0.52 -9.46 14.12 5.50 0.08 -9.38 16 11 C 0.51 10.12 7.89 -11.58 -0.09 10.03 16 12 O -0.53 -11.04 14.02 5.50 0.08 -10.97 16 13 N -0.57 -12.04 3.33 -171.00 -0.57 -12.61 16 14 C 0.10 1.90 6.06 -2.53 -0.02 1.89 16 15 C -0.12 -2.47 6.22 -24.58 -0.15 -2.62 16 16 C 0.25 6.00 0.86 -89.91 -0.08 5.92 16 17 O -0.58 -14.76 13.09 -35.23 -0.46 -15.22 16 18 C -0.54 -13.82 8.11 -34.44 -0.28 -14.10 16 19 H 0.07 1.71 7.76 -52.48 -0.41 1.31 16 20 C 0.07 1.79 5.28 -17.82 -0.09 1.70 16 21 N -0.90 -23.39 10.98 55.43 0.61 -22.78 16 22 Si 0.91 20.11 29.54 -169.99 -5.02 15.08 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 24 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.10 2.33 5.53 -3.04 -0.02 2.31 16 27 C 0.12 1.25 6.26 -2.98 -0.02 1.23 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.41 1.31 9.10 45.56 0.41 1.73 16 32 H 0.09 0.66 7.85 -51.93 -0.41 0.26 16 33 H 0.09 1.10 6.91 -51.92 -0.36 0.74 16 34 H 0.13 1.75 5.45 -51.93 -0.28 1.47 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.09 1.58 6.16 -51.93 -0.32 1.26 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 39 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 40 H 0.39 9.98 6.99 45.56 0.32 10.30 16 41 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 42 H 0.07 1.83 7.81 -51.93 -0.41 1.42 16 43 H 0.07 1.80 8.07 -51.93 -0.42 1.38 16 44 H 0.09 0.76 7.68 -51.93 -0.40 0.36 16 45 H 0.09 0.98 7.54 -51.93 -0.39 0.59 16 LS Contribution 368.21 15.07 5.55 5.55 Total: -1.00 -31.36 368.21 -6.47 -37.83 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -4.75 Total: 13.33 kcal Atomic # 6 Polarization: 19.53 SS G_CDS: -0.59 Total: 18.93 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.52 Total: -44.13 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.13 Total: -46.60 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.36 -6.47 -37.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589187433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.511 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds