Wall clock time and date at job start Sat Apr 11 2020 05:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50697 * 110.37407 * 2 1 4 4 O 1.20829 * 120.00121 * 240.73667 * 3 2 1 5 5 O 1.34234 * 120.00149 * 60.73551 * 3 2 1 6 6 C 1.54617 * 110.32595 * 237.81077 * 2 1 3 7 7 C 1.54601 * 102.91425 * 262.80787 * 6 2 1 8 8 N 1.48119 * 103.41730 * 322.86906 * 7 6 2 9 9 C 1.34787 * 127.02991 * 219.28161 * 8 7 6 10 10 O 1.21343 * 119.99684 * 179.68944 * 9 8 7 11 11 C 1.49454 * 119.99822 * 359.68866 * 9 8 7 12 12 O 1.21348 * 119.99885 * 359.97438 * 11 9 8 13 13 N 1.34774 * 119.99725 * 180.02562 * 11 9 8 14 14 C 1.47423 * 125.64935 * 0.02562 * 13 11 9 15 15 C 1.54909 * 104.83351 * 155.83866 * 14 13 11 16 16 C 1.55158 * 101.61642 * 36.99324 * 15 14 13 17 17 O 1.42898 * 110.71953 * 82.87702 * 16 15 14 18 18 C 1.50695 * 110.72412 * 206.15548 * 16 15 14 19 19 H 1.08007 * 119.99897 * 359.97438 * 18 16 15 20 20 C 1.37878 * 120.00476 * 179.97438 * 18 16 15 21 21 N 1.31518 * 119.99546 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 120.00362 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47151 * 59.99831 * 22 20 18 24 24 H 1.48496 * 109.47153 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47115 * 300.00274 * 22 20 18 26 26 C 1.47016 * 125.64624 * 179.97438 * 13 11 9 27 27 C 1.47482 * 105.93690 * 39.02361 * 8 7 6 28 28 H 1.08999 * 109.46861 * 299.26571 * 1 2 3 29 29 H 1.09008 * 109.46950 * 59.26340 * 1 2 3 30 30 H 1.09001 * 109.47763 * 179.26351 * 1 2 3 31 31 H 0.96691 * 117.00108 * 179.97438 * 5 3 2 32 32 H 1.09001 * 110.73959 * 21.29748 * 6 2 1 33 33 H 1.09007 * 110.74205 * 144.44130 * 6 2 1 34 34 H 1.08994 * 110.61875 * 204.35900 * 7 6 2 35 35 H 1.08993 * 110.54500 * 81.34675 * 7 6 2 36 36 H 1.09000 * 110.36544 * 37.00287 * 14 13 11 37 37 H 1.09002 * 110.37016 * 274.68213 * 14 13 11 38 38 H 1.09002 * 111.00594 * 155.08642 * 15 14 13 39 39 H 1.09002 * 111.00655 * 278.89906 * 15 14 13 40 40 H 0.96707 * 113.99877 * 179.97438 * 17 16 15 41 41 H 0.97004 * 119.99847 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.88531 * 300.50046 * 26 13 11 43 43 H 1.08996 * 109.88671 * 61.51859 * 26 13 11 44 44 H 1.09006 * 109.91272 * 94.13526 * 27 8 7 45 45 H 1.09003 * 109.91420 * 215.41837 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0546 1.4127 0.0000 4 8 2.7444 1.8010 -0.9129 5 8 1.7555 2.2397 1.0141 6 6 2.0670 -0.7724 -1.2270 7 6 2.3640 -2.1753 -0.6493 8 7 2.8803 -1.8857 0.7084 9 6 3.8923 -2.5108 1.3424 10 8 4.2152 -2.1634 2.4593 11 6 4.6165 -3.6318 0.6697 12 8 4.2932 -3.9795 -0.4470 13 7 5.6281 -4.2571 1.3039 14 6 6.1213 -3.9396 2.6564 15 6 6.7904 -5.2460 3.1515 16 6 7.4413 -5.7773 1.8470 17 8 8.7027 -5.1462 1.6180 18 6 7.5947 -7.2755 1.8995 19 1 7.2666 -7.8218 2.7716 20 6 8.1539 -7.9491 0.8344 21 7 8.5539 -7.2840 -0.2274 22 14 8.3447 -9.8062 0.8998 23 1 7.0094 -10.4356 1.0611 24 1 8.9689 -10.2843 -0.3599 25 1 9.2079 -10.1749 2.0505 26 6 6.4216 -5.3697 0.7619 27 6 2.0649 -0.7693 1.2221 28 1 -0.3633 0.5024 0.8965 29 1 -0.3633 0.5253 -0.8834 30 1 -0.3635 -1.0275 -0.0132 31 1 2.1152 3.1362 0.9702 32 1 1.3105 -0.8276 -2.0098 33 1 2.9788 -0.3101 -1.6054 34 1 3.1194 -2.6847 -1.2475 35 1 1.4507 -2.7678 -0.5952 36 1 5.2913 -3.6677 3.3087 37 1 6.8517 -3.1316 2.6139 38 1 7.5467 -5.0354 3.9077 39 1 6.0465 -5.9468 3.5305 40 1 9.1513 -5.4439 0.8146 41 1 8.9470 -7.7579 -0.9769 42 1 5.7697 -6.2124 0.5315 43 1 6.9440 -5.0481 -0.1391 44 1 1.2329 -1.1571 1.8100 45 1 2.6808 -0.1109 1.8348 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589187433.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:41 Heat of formation + Delta-G solvation = -213.701696 kcal Electronic energy + Delta-G solvation = -30734.208410 eV Core-core repulsion = 26330.313161 eV Total energy + Delta-G solvation = -4403.895249 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.28703 -41.53752 -40.17984 -38.95076 -38.77938 -37.19620 -36.21067 -34.21836 -34.17696 -31.92238 -30.78998 -29.80362 -28.56952 -27.36612 -26.14874 -24.80035 -24.07655 -22.98672 -21.46608 -20.89302 -20.32427 -19.18668 -18.94717 -18.42783 -18.15669 -17.72008 -17.52140 -17.10366 -16.87275 -16.73147 -16.26801 -16.07689 -15.44079 -14.96605 -14.84448 -14.79088 -14.69053 -14.43134 -14.09667 -13.94737 -13.83114 -13.61508 -13.50108 -13.39090 -13.08817 -12.85847 -12.81625 -12.64471 -12.58999 -12.42234 -12.32920 -12.29359 -12.19622 -12.07506 -11.74337 -11.54479 -11.20389 -10.70441 -10.53508 -10.30735 -10.08868 -9.73757 -8.28121 -6.44192 0.25123 0.96935 1.13802 1.44578 1.45166 1.53228 1.92297 2.04538 2.28849 2.39451 2.96780 2.99276 3.20967 3.36239 3.74563 3.77448 4.03374 4.05263 4.13064 4.20890 4.22271 4.32301 4.41854 4.55009 4.58766 4.63687 4.71271 4.82716 4.88217 4.90964 4.92961 4.99760 5.05536 5.07521 5.17095 5.30295 5.30476 5.42534 5.52328 5.72490 5.94209 6.00032 6.24500 6.47187 6.63486 6.83438 6.88846 7.27501 7.36944 8.78232 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.024351 B = 0.002571 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.560653 B =10888.336868 C =11236.537813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C 0.494 3.506 4 O -0.545 6.545 5 O -0.504 6.504 6 C -0.117 4.117 7 C 0.085 3.915 8 N -0.596 5.596 9 C 0.532 3.468 10 O -0.531 6.531 11 C 0.506 3.494 12 O -0.547 6.547 13 N -0.583 5.583 14 C 0.108 3.892 15 C -0.114 4.114 16 C 0.234 3.766 17 O -0.590 6.590 18 C -0.557 4.557 19 H 0.070 0.930 20 C 0.027 3.973 21 N -0.917 5.917 22 Si 0.966 3.034 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.116 3.884 27 C 0.117 3.883 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.429 0.571 32 H 0.125 0.875 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.065 0.935 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.379 0.621 41 H 0.273 0.727 42 H 0.051 0.949 43 H 0.041 0.959 44 H 0.117 0.883 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.549 14.960 1.456 23.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C 0.337 3.663 4 O -0.435 6.435 5 O -0.317 6.317 6 C -0.155 4.155 7 C -0.036 4.036 8 N -0.329 5.329 9 C 0.315 3.685 10 O -0.409 6.409 11 C 0.289 3.711 12 O -0.427 6.427 13 N -0.315 5.315 14 C -0.014 4.014 15 C -0.152 4.152 16 C 0.194 3.806 17 O -0.399 6.399 18 C -0.595 4.595 19 H 0.088 0.912 20 C -0.174 4.174 21 N -0.556 5.556 22 Si 0.792 3.208 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.195 1.195 26 C -0.006 4.006 27 C -0.004 4.004 28 H 0.103 0.897 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.291 0.709 32 H 0.144 0.856 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.135 0.865 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.563 14.966 1.653 23.902 hybrid contribution 1.151 -0.579 -1.029 1.649 sum -17.412 14.387 0.623 22.595 Atomic orbital electron populations 1.21932 0.86990 1.05377 1.04539 1.21490 1.00697 0.87017 0.97210 1.23342 0.75904 0.88579 0.78483 1.90735 1.37311 1.77553 1.37907 1.84479 1.71793 1.29206 1.46252 1.22857 1.03253 0.93060 0.96311 1.23170 1.01614 0.97741 0.81121 1.48584 1.31264 1.33945 1.19151 1.19460 0.80283 0.83253 0.85463 1.90693 1.65706 1.65387 1.19089 1.20026 0.81117 0.84055 0.85874 1.90611 1.66440 1.66170 1.19509 1.48704 1.30858 1.33336 1.18602 1.22639 0.99277 0.97688 0.81753 1.22830 0.99516 0.95551 0.97274 1.19712 0.80399 0.90752 0.89771 1.86090 1.35469 1.68749 1.49614 1.21789 1.42164 0.92197 1.03385 0.91203 1.25823 0.93671 1.03497 0.94403 1.69666 1.41302 1.37965 1.06705 0.85473 0.78557 0.79310 0.77508 1.19609 1.20886 1.19470 1.22825 0.93236 0.86047 0.98499 1.22336 0.95616 0.87386 0.95099 0.89692 0.90385 0.88691 0.70918 0.85643 0.91413 0.88595 0.87392 0.87762 0.91685 0.89156 0.89404 0.76955 0.91796 0.93075 0.94035 0.86536 0.90649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.92 8.17 71.98 0.59 -0.33 16 2 C -0.06 -0.91 0.91 -52.04 -0.05 -0.95 16 3 C 0.49 8.79 6.75 71.23 0.48 9.27 16 4 O -0.54 -13.79 16.20 21.95 0.36 -13.43 16 5 O -0.50 -5.96 13.30 -51.45 -0.68 -6.64 16 6 C -0.12 -2.00 5.94 31.69 0.19 -1.81 16 7 C 0.08 1.81 6.60 86.61 0.57 2.38 16 8 N -0.60 -15.39 3.29 -811.64 -2.67 -18.07 16 9 C 0.53 18.02 7.92 87.27 0.69 18.71 16 10 O -0.53 -19.03 14.12 -3.22 -0.05 -19.08 16 11 C 0.51 20.29 7.89 87.27 0.69 20.98 16 12 O -0.55 -23.27 14.02 -3.24 -0.05 -23.32 16 13 N -0.58 -24.98 3.33 -813.27 -2.70 -27.68 16 14 C 0.11 4.16 6.06 86.86 0.53 4.69 16 15 C -0.11 -4.61 6.22 31.99 0.20 -4.41 16 16 C 0.23 11.47 0.86 -10.33 -0.01 11.47 16 17 O -0.59 -30.55 13.09 -148.98 -1.95 -32.50 16 18 C -0.56 -28.94 8.11 25.60 0.21 -28.74 16 19 H 0.07 3.51 7.76 -2.91 -0.02 3.49 16 20 C 0.03 1.39 5.28 84.65 0.45 1.83 16 21 N -0.92 -48.93 10.98 21.45 0.24 -48.70 16 22 Si 0.97 41.29 29.54 68.60 2.03 43.32 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 C 0.12 5.71 5.53 86.75 0.48 6.19 16 27 C 0.12 2.14 6.26 86.53 0.54 2.68 16 28 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 30 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.43 1.84 9.10 -74.06 -0.67 1.16 16 32 H 0.13 1.38 7.85 -2.39 -0.02 1.36 16 33 H 0.07 1.57 6.91 -2.38 -0.02 1.55 16 34 H 0.10 2.70 5.45 -2.39 -0.01 2.69 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.10 3.68 6.16 -2.39 -0.01 3.67 16 37 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.09 3.34 8.02 -2.39 -0.02 3.32 16 40 H 0.38 20.37 6.99 -74.05 -0.52 19.85 16 41 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 42 H 0.05 2.68 7.81 -2.39 -0.02 2.66 16 43 H 0.04 2.23 8.07 -2.39 -0.02 2.21 16 44 H 0.12 1.55 7.68 -2.38 -0.02 1.53 16 45 H 0.08 1.58 7.54 -2.39 -0.02 1.56 16 Total: -1.00 -69.38 368.21 -0.07 -69.45 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: -0.14 Total: 34.69 kcal Atomic # 6 Polarization: 36.40 SS G_CDS: 5.55 Total: 41.96 kcal Atomic # 7 Polarization: -89.30 SS G_CDS: -5.14 Total: -94.44 kcal Atomic # 8 Polarization: -92.60 SS G_CDS: -2.37 Total: -94.97 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Total: -69.38 -0.07 -69.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589187433.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.248 kcal (2) G-P(sol) polarization free energy of solvation -69.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds