Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38166 * 119.91367 * 2 1 4 4 C 1.38013 * 120.26793 * 179.97438 * 3 2 1 5 5 C 1.39651 * 120.09163 * 0.02562 * 4 3 2 6 6 C 1.47862 * 120.08680 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99920 * 134.42420 * 6 5 4 8 8 N 1.34776 * 120.00001 * 314.42186 * 6 5 4 9 9 C 1.46502 * 119.99826 * 185.88745 * 8 6 5 10 10 C 1.50696 * 109.47160 * 90.00367 * 9 8 6 11 11 H 1.08003 * 119.99958 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99439 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00344 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46993 * 89.99802 * 14 12 10 16 16 H 1.48501 * 109.47298 * 209.99984 * 14 12 10 17 17 H 1.48505 * 109.46896 * 329.99991 * 14 12 10 18 18 C 1.46502 * 120.00019 * 5.88633 * 8 6 5 19 19 C 1.53003 * 109.46953 * 98.10798 * 18 8 6 20 20 C 1.47201 * 109.47299 * 185.44280 * 19 18 8 21 21 N 6.02263 * 117.04390 * 334.77660 * 2 1 3 22 22 C 1.39368 * 119.82751 * 0.02562 * 5 4 3 23 23 C 1.39073 * 119.73003 * 359.71231 * 22 5 4 24 24 C 1.48473 * 120.04772 * 180.31393 * 23 22 5 25 25 N 1.34042 * 126.67484 * 179.91774 * 24 23 22 26 26 N 1.28992 * 107.26758 * 179.83321 * 25 24 23 27 27 N 1.28731 * 108.94327 * 0.42914 * 26 25 24 28 28 H 0.96998 * 125.33755 * 179.72114 * 27 26 25 29 29 N 1.28872 * 109.31398 * 359.72798 * 27 26 25 30 30 H 1.08988 * 109.47096 * 89.99888 * 1 2 3 31 31 H 1.09005 * 109.46739 * 329.99799 * 1 2 3 32 32 H 1.09005 * 109.46861 * 210.00126 * 1 2 3 33 33 H 1.08001 * 119.86819 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.95191 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.46691 * 209.99848 * 9 8 6 36 36 H 1.08996 * 109.47508 * 330.00035 * 9 8 6 37 37 H 0.96999 * 119.99275 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47286 * 218.10812 * 18 8 6 39 39 H 1.08998 * 109.47097 * 338.11614 * 18 8 6 40 40 H 1.09001 * 109.47345 * 305.44444 * 19 18 8 41 41 H 1.09006 * 109.47138 * 65.44563 * 19 18 8 42 42 H 1.08002 * 120.13772 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1976 0.0000 4 6 3.5762 1.2061 0.0005 5 6 4.2838 0.0022 0.0005 6 6 5.7624 0.0115 0.0017 7 8 6.3742 -0.7219 0.7536 8 7 6.4318 0.8330 -0.8310 9 6 7.8917 0.7515 -0.9234 10 6 8.2728 -0.2350 -1.9969 11 1 7.5045 -0.7501 -2.5543 12 6 9.6024 -0.4808 -2.2668 13 7 10.5380 0.1462 -1.5876 14 14 10.0749 -1.7042 -3.5970 15 1 10.1980 -0.9982 -4.8976 16 1 11.3742 -2.3345 -3.2510 17 1 9.0279 -2.7524 -3.6999 18 6 5.6996 1.8074 -1.6439 19 6 5.7401 3.1753 -0.9596 20 6 4.8970 4.1229 -1.7067 21 7 4.2454 4.8527 -2.2859 22 6 3.5928 -1.2081 -0.0005 23 6 2.2020 -1.2082 0.0044 24 6 1.4587 -2.4934 0.0104 25 7 0.1273 -2.6482 0.0171 26 7 -0.1108 -3.9160 0.0170 27 7 1.0087 -4.5514 0.0196 28 1 1.1060 -5.5165 0.0240 29 7 1.9797 -3.7042 0.0157 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 1.6525 2.1308 0.0004 34 1 4.1096 2.1452 0.0009 35 1 8.2952 1.7330 -1.1721 36 1 8.2985 0.4231 0.0329 37 1 11.4734 -0.0265 -1.7778 38 1 6.1618 1.8798 -2.6284 39 1 4.6638 1.4856 -1.7514 40 1 5.3666 3.0827 0.0602 41 1 6.7668 3.5409 -0.9388 42 1 4.1350 -2.1421 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592118361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = 158.247395 kcal Electronic energy + Delta-G solvation = -28563.966085 eV Core-core repulsion = 24548.094182 eV Total energy + Delta-G solvation = -4015.871904 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.63395 -40.30057 -38.45784 -36.94475 -35.36155 -34.72100 -33.80884 -33.06283 -32.51306 -31.08561 -30.57363 -28.23235 -26.78808 -25.10855 -24.30192 -24.09372 -23.30817 -21.93551 -21.53145 -19.68935 -18.68528 -17.80624 -17.32421 -16.93456 -16.55955 -16.33537 -15.71562 -15.26549 -15.07737 -14.61402 -14.47495 -14.23014 -14.06784 -13.85457 -13.62500 -13.49193 -12.97681 -12.79214 -12.56304 -12.51212 -12.27214 -12.06069 -12.01842 -11.77708 -11.56839 -11.55482 -11.48022 -11.30780 -11.15296 -10.96769 -10.83931 -10.73665 -10.64087 -10.22805 -9.75252 -9.23227 -8.91982 -8.61777 -8.49653 -7.90699 -6.12044 -4.16835 0.53410 0.99414 1.10100 2.06046 2.14689 2.69215 2.77406 3.15339 3.26667 3.34044 3.37489 3.45318 3.59606 3.77270 4.00966 4.18169 4.39163 4.67228 4.71129 4.83199 4.91964 5.04412 5.09463 5.14432 5.23100 5.25911 5.30478 5.41179 5.57378 5.61075 5.70065 5.79233 5.85761 6.05535 6.13424 6.14824 6.22028 6.29790 6.42255 6.69933 6.90452 7.30735 7.37879 7.53991 7.84157 7.96712 8.12983 8.16746 8.74990 8.91349 9.48909 10.96074 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003674 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.601595 B = 7619.011846 C = 9893.103692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.027 4.027 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.124 4.124 6 C 0.553 3.447 7 O -0.524 6.524 8 N -0.588 5.588 9 C 0.244 3.756 10 C -0.532 4.532 11 H 0.059 0.941 12 C 0.064 3.936 13 N -0.892 5.892 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.274 1.274 18 C 0.106 3.894 19 C -0.057 4.057 20 C 0.214 3.786 21 N -0.439 5.439 22 C -0.025 4.025 23 C -0.034 4.034 24 C 0.228 3.772 25 N -0.269 5.269 26 N -0.056 5.056 27 N -0.226 5.226 28 H 0.475 0.525 29 N -0.288 5.288 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.140 0.860 35 H 0.038 0.962 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.610 -1.459 3.813 19.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.148 4.148 4 C -0.099 4.099 5 C -0.128 4.128 6 C 0.339 3.661 7 O -0.400 6.400 8 N -0.319 5.319 9 C 0.125 3.875 10 C -0.570 4.570 11 H 0.077 0.923 12 C -0.138 4.138 13 N -0.531 5.531 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.199 1.199 18 C -0.020 4.020 19 C -0.098 4.098 20 C -0.104 4.104 21 N -0.117 5.117 22 C -0.045 4.045 23 C -0.037 4.037 24 C -0.052 4.052 25 N -0.142 5.142 26 N -0.051 5.051 27 N -0.072 5.072 28 H 0.330 0.670 29 N -0.139 5.139 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.129 0.871 41 H 0.141 0.859 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -19.556 -1.158 3.372 19.878 hybrid contribution 1.190 -1.305 -0.629 1.875 sum -18.366 -2.463 2.743 18.732 Atomic orbital electron populations 1.21254 0.89948 1.04437 1.03342 1.20052 0.96826 0.91325 0.94699 1.20908 0.93733 0.97456 1.02721 1.21925 0.94458 0.98067 0.95468 1.20073 0.94674 0.93538 1.04479 1.18106 0.85858 0.81039 0.81086 1.90791 1.69057 1.40603 1.39584 1.48119 1.10085 1.33918 1.39761 1.19409 0.71544 0.97658 0.98869 1.21421 0.92035 1.24519 1.19057 0.92275 1.24902 0.96288 0.96143 0.96511 1.69919 1.00418 1.42248 1.40511 0.86522 0.78016 0.81397 0.81662 1.20606 1.21081 1.19883 1.21568 0.98649 0.85890 0.95911 1.20031 0.99331 0.92124 0.98297 1.29070 0.93613 0.93906 0.93780 1.81255 1.10515 1.10513 1.09374 1.21177 0.91769 0.98520 0.93080 1.16997 0.91585 0.86666 1.08484 1.23604 0.88118 0.92291 1.01156 1.76087 1.13635 1.05845 1.18590 1.78899 1.11189 1.00333 1.14683 1.47723 1.01092 1.12482 1.45892 0.67042 1.75048 1.17437 0.99796 1.21657 0.90634 0.91521 0.88135 0.84809 0.84269 0.94430 0.93194 0.92622 0.88708 0.89637 0.87098 0.85935 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 9.20 36.01 0.33 -0.91 16 2 C -0.03 -0.30 5.91 -104.22 -0.62 -0.91 16 3 C -0.13 -1.33 9.67 -39.69 -0.38 -1.72 16 4 C -0.08 -0.93 7.40 -39.14 -0.29 -1.22 16 5 C -0.12 -1.85 5.09 -105.01 -0.53 -2.39 16 6 C 0.55 10.46 7.27 -12.32 -0.09 10.37 16 7 O -0.52 -12.24 16.54 5.32 0.09 -12.15 16 8 N -0.59 -10.71 2.46 -176.17 -0.43 -11.14 16 9 C 0.24 5.63 5.22 -5.19 -0.03 5.60 16 10 C -0.53 -13.92 9.39 -34.44 -0.32 -14.24 16 11 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -24.98 13.29 55.43 0.74 -24.24 16 14 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C 0.11 1.42 4.83 -4.04 -0.02 1.40 16 19 C -0.06 -0.58 5.10 -29.52 -0.15 -0.74 16 20 C 0.21 2.47 15.38 -20.73 -0.32 2.15 16 21 N -0.44 -6.13 18.54 42.19 0.78 -5.35 16 22 C -0.02 -0.36 9.34 -38.85 -0.36 -0.72 16 23 C -0.03 -0.44 5.87 -104.94 -0.62 -1.06 16 24 C 0.23 2.89 7.78 -156.30 -1.22 1.68 16 25 N -0.27 -3.21 9.05 32.16 0.29 -2.92 16 26 N -0.06 -0.58 13.47 60.35 0.81 0.23 16 27 N -0.23 -1.93 7.90 60.35 0.48 -1.45 16 28 H 0.48 1.77 8.96 -340.37 -3.05 -1.28 16 29 N -0.29 -3.42 12.08 32.17 0.39 -3.03 16 30 H 0.08 0.68 8.14 -51.94 -0.42 0.25 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.10 1.04 5.10 -51.93 -0.26 0.77 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.14 1.36 3.63 -52.49 -0.19 1.17 16 35 H 0.04 0.85 7.99 -51.93 -0.42 0.43 16 36 H 0.05 1.32 7.35 -51.93 -0.38 0.94 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.09 1.33 8.13 -51.93 -0.42 0.91 16 39 H 0.09 1.03 5.03 -51.93 -0.26 0.77 16 40 H 0.11 0.95 6.18 -51.93 -0.32 0.63 16 41 H 0.12 1.22 8.06 -51.93 -0.42 0.80 16 42 H 0.14 2.23 7.88 -52.49 -0.41 1.81 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -34.17 365.82 -8.03 -42.20 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -6.95 Total: -2.47 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -4.71 Total: -1.08 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 3.05 Total: -47.90 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.17 -8.03 -42.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592118361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.446 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds