Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38166 * 119.91367 * 2 1 4 4 C 1.38013 * 120.26793 * 179.97438 * 3 2 1 5 5 C 1.39651 * 120.09163 * 0.02562 * 4 3 2 6 6 C 1.47862 * 120.08680 * 180.02562 * 5 4 3 7 7 O 1.21555 * 119.99920 * 134.42420 * 6 5 4 8 8 N 1.34776 * 120.00001 * 314.42186 * 6 5 4 9 9 C 1.46502 * 119.99826 * 185.88745 * 8 6 5 10 10 C 1.50696 * 109.47160 * 90.00367 * 9 8 6 11 11 H 1.08003 * 119.99958 * 359.97438 * 10 9 8 12 12 C 1.37880 * 120.00344 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99439 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00344 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46993 * 89.99802 * 14 12 10 16 16 H 1.48501 * 109.47298 * 209.99984 * 14 12 10 17 17 H 1.48505 * 109.46896 * 329.99991 * 14 12 10 18 18 C 1.46502 * 120.00019 * 5.88633 * 8 6 5 19 19 C 1.53003 * 109.46953 * 98.10798 * 18 8 6 20 20 C 1.47201 * 109.47299 * 185.44280 * 19 18 8 21 21 N 6.02263 * 117.04390 * 334.77660 * 2 1 3 22 22 C 1.39368 * 119.82751 * 0.02562 * 5 4 3 23 23 C 1.39073 * 119.73003 * 359.71231 * 22 5 4 24 24 C 1.48473 * 120.04772 * 180.31393 * 23 22 5 25 25 N 1.34042 * 126.67484 * 179.91774 * 24 23 22 26 26 N 1.28992 * 107.26758 * 179.83321 * 25 24 23 27 27 N 1.28731 * 108.94327 * 0.42914 * 26 25 24 28 28 H 0.96998 * 125.33755 * 179.72114 * 27 26 25 29 29 N 1.28872 * 109.31398 * 359.72798 * 27 26 25 30 30 H 1.08988 * 109.47096 * 89.99888 * 1 2 3 31 31 H 1.09005 * 109.46739 * 329.99799 * 1 2 3 32 32 H 1.09005 * 109.46861 * 210.00126 * 1 2 3 33 33 H 1.08001 * 119.86819 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.95191 * 180.02562 * 4 3 2 35 35 H 1.08999 * 109.46691 * 209.99848 * 9 8 6 36 36 H 1.08996 * 109.47508 * 330.00035 * 9 8 6 37 37 H 0.96999 * 119.99275 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47286 * 218.10812 * 18 8 6 39 39 H 1.08998 * 109.47097 * 338.11614 * 18 8 6 40 40 H 1.09001 * 109.47345 * 305.44444 * 19 18 8 41 41 H 1.09006 * 109.47138 * 65.44563 * 19 18 8 42 42 H 1.08002 * 120.13772 * 179.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1961 1.1976 0.0000 4 6 3.5762 1.2061 0.0005 5 6 4.2838 0.0022 0.0005 6 6 5.7624 0.0115 0.0017 7 8 6.3742 -0.7219 0.7536 8 7 6.4318 0.8330 -0.8310 9 6 7.8917 0.7515 -0.9234 10 6 8.2728 -0.2350 -1.9969 11 1 7.5045 -0.7501 -2.5543 12 6 9.6024 -0.4808 -2.2668 13 7 10.5380 0.1462 -1.5876 14 14 10.0749 -1.7042 -3.5970 15 1 10.1980 -0.9982 -4.8976 16 1 11.3742 -2.3345 -3.2510 17 1 9.0279 -2.7524 -3.6999 18 6 5.6996 1.8074 -1.6439 19 6 5.7401 3.1753 -0.9596 20 6 4.8970 4.1229 -1.7067 21 7 4.2454 4.8527 -2.2859 22 6 3.5928 -1.2081 -0.0005 23 6 2.2020 -1.2082 0.0044 24 6 1.4587 -2.4934 0.0104 25 7 0.1273 -2.6482 0.0171 26 7 -0.1108 -3.9160 0.0170 27 7 1.0087 -4.5514 0.0196 28 1 1.1060 -5.5165 0.0240 29 7 1.9797 -3.7042 0.0157 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 0.8900 0.5139 32 1 -0.3633 -0.8900 0.5139 33 1 1.6525 2.1308 0.0004 34 1 4.1096 2.1452 0.0009 35 1 8.2952 1.7330 -1.1721 36 1 8.2985 0.4231 0.0329 37 1 11.4734 -0.0265 -1.7778 38 1 6.1618 1.8798 -2.6284 39 1 4.6638 1.4856 -1.7514 40 1 5.3666 3.0827 0.0602 41 1 6.7668 3.5409 -0.9388 42 1 4.1350 -2.1421 -0.0010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592118361.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = 136.379185 kcal Electronic energy + Delta-G solvation = -28564.914362 eV Core-core repulsion = 24548.094182 eV Total energy + Delta-G solvation = -4016.820181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.48791 -41.51751 -39.66190 -38.07318 -36.73911 -35.64971 -34.97709 -34.54783 -33.62488 -32.35975 -31.53764 -29.69015 -28.10171 -26.04365 -25.38761 -25.25510 -24.80828 -22.91369 -22.63747 -20.77550 -19.77213 -18.93151 -18.42302 -18.17534 -18.06242 -17.60360 -16.86131 -16.56915 -16.40395 -15.86418 -15.70098 -15.48539 -15.12280 -14.77859 -14.70339 -14.54205 -14.29745 -14.14457 -13.67652 -13.60943 -13.54732 -13.21036 -13.02335 -12.95373 -12.84168 -12.77013 -12.54673 -12.48885 -12.47051 -12.38556 -12.15057 -12.06160 -11.78552 -11.67303 -11.57474 -10.75622 -10.57019 -9.89362 -9.62375 -9.49441 -8.17572 -6.29399 -0.39737 0.04105 0.16817 1.20649 1.39673 1.40351 1.42653 1.51641 1.69539 1.82355 1.85025 2.24205 2.43825 2.64124 2.71733 3.04666 3.14241 3.17158 3.59484 3.84337 3.86143 3.95931 4.05623 4.07189 4.20253 4.37813 4.40785 4.47810 4.65320 4.81210 4.81879 4.92519 4.97764 5.03257 5.07153 5.23331 5.29536 5.36076 5.40468 5.56258 5.59134 5.59877 5.81992 5.87176 6.13176 6.60724 6.66093 6.79594 7.10370 7.28078 7.44280 8.89277 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.003674 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.601595 B = 7619.011846 C = 9893.103692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 C -0.116 4.116 4 C -0.071 4.071 5 C -0.140 4.140 6 C 0.550 3.450 7 O -0.582 6.582 8 N -0.587 5.587 9 C 0.258 3.742 10 C -0.544 4.544 11 H 0.052 0.948 12 C 0.016 3.984 13 N -0.922 5.922 14 Si 0.955 3.045 15 H -0.266 1.266 16 H -0.283 1.283 17 H -0.276 1.276 18 C 0.102 3.898 19 C -0.046 4.046 20 C 0.243 3.757 21 N -0.475 5.475 22 C -0.039 4.039 23 C -0.041 4.041 24 C 0.214 3.786 25 N -0.275 5.275 26 N -0.055 5.055 27 N -0.201 5.201 28 H 0.493 0.507 29 N -0.307 5.307 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.172 0.828 34 H 0.159 0.841 35 H 0.045 0.955 36 H 0.009 0.991 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.131 0.869 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.018 -0.358 3.140 21.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 C -0.134 4.134 4 C -0.089 4.089 5 C -0.143 4.143 6 C 0.339 3.661 7 O -0.463 6.463 8 N -0.316 5.316 9 C 0.138 3.862 10 C -0.583 4.583 11 H 0.070 0.930 12 C -0.184 4.184 13 N -0.562 5.562 14 Si 0.781 3.219 15 H -0.191 1.191 16 H -0.209 1.209 17 H -0.201 1.201 18 C -0.022 4.022 19 C -0.086 4.086 20 C -0.075 4.075 21 N -0.153 5.153 22 C -0.060 4.060 23 C -0.044 4.044 24 C -0.065 4.065 25 N -0.147 5.147 26 N -0.050 5.050 27 N -0.051 5.051 28 H 0.352 0.648 29 N -0.159 5.159 30 H 0.101 0.899 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.190 0.810 34 H 0.177 0.823 35 H 0.063 0.937 36 H 0.027 0.973 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.122 0.878 40 H 0.154 0.846 41 H 0.148 0.852 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.006 -0.042 2.670 22.167 hybrid contribution 1.854 -1.730 -0.395 2.566 sum -20.152 -1.772 2.275 20.357 Atomic orbital electron populations 1.21289 0.88248 1.05241 1.03964 1.20401 0.98021 0.90856 0.92909 1.21292 0.92989 0.98549 1.00534 1.22080 0.95191 0.97232 0.94424 1.19692 0.91890 0.95142 1.07591 1.18735 0.87621 0.79783 0.79948 1.90748 1.70705 1.42864 1.41989 1.47976 1.08525 1.34947 1.40155 1.18908 0.74568 0.96977 0.95787 1.21739 0.92094 1.24964 1.19484 0.93016 1.25662 0.96408 0.97773 0.98543 1.70015 1.00688 1.43597 1.41897 0.85599 0.77391 0.79246 0.79689 1.19127 1.20904 1.20150 1.21774 0.98863 0.86352 0.95221 1.19936 0.99937 0.89835 0.98933 1.28943 0.92635 0.93152 0.92752 1.81303 1.11866 1.11649 1.10437 1.21002 0.92708 0.97654 0.94677 1.17076 0.90799 0.87825 1.08688 1.23651 0.88521 0.92435 1.01940 1.76099 1.13140 1.06413 1.19085 1.78837 1.11464 1.00123 1.14568 1.47750 1.00086 1.13207 1.44106 0.64808 1.75020 1.18512 1.00234 1.22162 0.89901 0.88960 0.89120 0.81014 0.82346 0.93742 0.97310 0.92493 0.89258 0.87795 0.84562 0.85160 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 9.20 71.24 0.66 -1.34 16 2 C -0.02 -0.38 5.91 -19.60 -0.12 -0.50 16 3 C -0.12 -1.92 9.67 22.20 0.21 -1.70 16 4 C -0.07 -1.45 7.40 22.56 0.17 -1.28 16 5 C -0.14 -4.15 5.09 -20.12 -0.10 -4.25 16 6 C 0.55 21.51 7.27 86.79 0.63 22.14 16 7 O -0.58 -28.94 16.54 -3.89 -0.06 -29.01 16 8 N -0.59 -21.65 2.46 -829.55 -2.04 -23.69 16 9 C 0.26 12.32 5.22 85.63 0.45 12.77 16 10 C -0.54 -29.22 9.39 25.60 0.24 -28.98 16 11 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 12 C 0.02 0.86 5.46 84.65 0.46 1.32 16 13 N -0.92 -52.63 13.29 21.45 0.28 -52.35 16 14 Si 0.96 43.31 29.54 68.60 2.03 45.33 16 15 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 18 C 0.10 2.60 4.83 86.38 0.42 3.02 16 19 C -0.05 -0.83 5.10 28.79 0.15 -0.68 16 20 C 0.24 4.89 15.38 89.43 1.38 6.27 16 21 N -0.47 -12.07 18.54 20.02 0.37 -11.69 16 22 C -0.04 -1.18 9.34 22.74 0.21 -0.97 16 23 C -0.04 -1.02 5.87 -20.07 -0.12 -1.14 16 24 C 0.21 5.32 7.78 137.39 1.07 6.39 16 25 N -0.28 -6.22 9.05 -52.18 -0.47 -6.69 16 26 N -0.06 -1.08 13.47 37.02 0.50 -0.58 16 27 N -0.20 -3.24 7.90 37.02 0.29 -2.95 16 28 H 0.49 3.12 8.96 -347.54 -3.12 0.00 16 29 N -0.31 -7.25 12.08 -52.12 -0.63 -7.88 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.09 0.96 8.08 -2.38 -0.02 0.94 16 32 H 0.09 1.65 5.10 -2.38 -0.01 1.64 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 2.54 3.63 -2.91 -0.01 2.53 16 35 H 0.04 2.04 7.99 -2.39 -0.02 2.02 16 36 H 0.01 0.49 7.35 -2.39 -0.02 0.47 16 37 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 38 H 0.09 2.41 8.13 -2.39 -0.02 2.39 16 39 H 0.10 2.29 5.03 -2.39 -0.01 2.28 16 40 H 0.14 1.86 6.18 -2.39 -0.01 1.84 16 41 H 0.13 2.30 8.06 -2.38 -0.02 2.28 16 42 H 0.12 4.01 7.88 -2.91 -0.02 3.99 16 Total: -1.00 -77.39 365.82 3.97 -73.42 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -2.00 Total: 5.03 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: 5.70 Total: 11.06 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -1.70 Total: -105.84 kcal Atomic # 8 Polarization: -28.94 SS G_CDS: -0.06 Total: -29.01 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.33 kcal Total: -77.39 3.97 -73.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592118361.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 209.802 kcal (2) G-P(sol) polarization free energy of solvation -77.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds