Wall clock time and date at job start Sat Apr 11 2020 05:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38056 * 126.29369 * 2 1 4 4 C 1.47404 * 126.41628 * 359.97438 * 3 2 1 5 5 O 1.21620 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99782 * 179.97438 * 4 3 2 7 7 C 1.39747 * 119.99947 * 184.88231 * 6 4 3 8 8 C 1.41387 * 120.44720 * 270.74892 * 7 6 4 9 9 N 1.32235 * 133.47651 * 359.97438 * 8 7 6 10 10 N 1.28683 * 109.47535 * 180.02562 * 9 8 7 11 11 C 1.30841 * 110.25351 * 359.97438 * 10 9 8 12 12 N 1.36021 * 107.49739 * 359.97438 * 11 10 9 13 13 C 1.36556 * 133.62074 * 179.97438 * 12 11 10 14 14 C 1.34954 * 120.64311 * 180.02562 * 13 12 11 15 15 C 1.36651 * 120.44388 * 90.46479 * 7 6 4 16 16 C 1.50700 * 120.16295 * 359.97438 * 15 7 6 17 17 C 1.41301 * 107.16610 * 180.24392 * 3 2 1 18 18 N 1.30450 * 108.02692 * 359.58946 * 17 3 2 19 19 N 1.34278 * 126.29481 * 180.02562 * 2 1 3 20 20 C 1.46496 * 125.75170 * 359.97284 * 19 2 1 21 21 C 1.50695 * 109.47195 * 90.00050 * 20 19 2 22 22 H 1.08003 * 120.00323 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00269 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99998 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47441 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47171 * 120.00304 * 25 23 21 28 28 H 1.48493 * 109.47156 * 240.00321 * 25 23 21 29 29 H 1.08994 * 109.47507 * 89.97524 * 1 2 3 30 30 H 1.09008 * 109.47004 * 209.97457 * 1 2 3 31 31 H 1.09004 * 109.47193 * 329.97044 * 1 2 3 32 32 H 0.96998 * 120.00253 * 4.88836 * 6 4 3 33 33 H 1.07996 * 126.25118 * 179.97438 * 11 10 9 34 34 H 1.08003 * 119.67681 * 0.02562 * 13 12 11 35 35 H 1.07994 * 119.77902 * 180.02562 * 14 13 12 36 36 H 1.08992 * 109.47637 * 89.99255 * 16 15 7 37 37 H 1.08997 * 109.47146 * 210.00251 * 16 15 7 38 38 H 1.09009 * 109.46699 * 329.99978 * 16 15 7 39 39 H 1.08005 * 125.98443 * 179.72126 * 17 3 2 40 40 H 1.08995 * 109.47532 * 210.00397 * 20 19 2 41 41 H 1.09006 * 109.47291 * 330.00382 * 20 19 2 42 42 H 0.96999 * 120.00197 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8002 3.5105 0.0001 7 6 2.3881 4.8418 0.1026 8 6 2.0863 5.5899 -1.0587 9 7 2.1004 5.3093 -2.3508 10 7 1.7364 6.3471 -3.0191 11 6 1.4711 7.3384 -2.2075 12 7 1.6817 6.8957 -0.9387 13 6 1.5695 7.4759 0.2924 14 6 1.8527 6.7762 1.4110 15 6 2.2657 5.4365 1.3268 16 6 2.5745 4.6592 2.5804 17 6 3.6591 0.6497 -0.0057 18 7 3.6341 -0.6545 -0.0001 19 7 2.3018 -1.0823 -0.0005 20 6 1.8502 -2.4759 -0.0005 21 6 1.6948 -2.9535 -1.4213 22 1 1.9112 -2.2859 -2.2423 23 6 1.2774 -4.2432 -1.6734 24 7 1.0143 -5.0564 -0.6738 25 14 1.0855 -4.8355 -3.4346 26 1 1.4417 -3.7367 -4.3680 27 1 1.9850 -5.9938 -3.6681 28 1 -0.3221 -5.2469 -3.6679 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3634 0.8897 0.5143 32 1 3.7443 3.2991 -0.0708 33 1 1.1445 8.3275 -2.4928 34 1 1.2510 8.5049 0.3715 35 1 1.7588 7.2488 2.3775 36 1 3.6284 4.7784 2.8315 37 1 1.9611 5.0331 3.4001 38 1 2.3574 3.6037 2.4162 39 1 4.5450 1.2675 -0.0115 40 1 2.5849 -3.0960 0.5129 41 1 0.8917 -2.5473 0.5136 42 1 0.7203 -5.9636 -0.8511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595732658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:09 Heat of formation + Delta-G solvation = 147.693915 kcal Electronic energy + Delta-G solvation = -28595.555622 eV Core-core repulsion = 24579.226085 eV Total energy + Delta-G solvation = -4016.329537 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.71362 -40.87031 -39.63410 -38.17719 -35.60380 -33.93777 -33.39845 -32.09957 -31.43966 -31.02031 -30.18103 -27.93602 -27.04586 -26.58668 -24.30734 -23.52136 -22.92283 -22.35432 -21.82076 -20.07869 -19.27028 -18.50446 -17.76371 -17.28919 -16.78723 -16.56158 -16.43213 -15.94942 -15.17418 -14.86384 -14.72667 -14.50655 -14.23862 -13.83148 -13.76453 -13.48941 -13.13882 -12.64604 -12.59995 -12.57194 -12.42887 -12.20195 -12.10115 -11.82743 -11.79106 -11.48382 -11.08779 -10.99050 -10.89130 -10.71533 -10.36080 -10.22592 -9.90017 -9.80142 -9.54879 -9.45815 -8.70081 -8.59956 -8.26777 -7.96458 -6.32630 -4.40110 0.22774 0.83849 1.97571 2.14373 2.53513 2.76561 2.92592 3.09768 3.19396 3.27487 3.33475 3.46884 3.75101 3.85509 4.07859 4.24289 4.26639 4.39867 4.58859 4.88562 5.01482 5.08280 5.11806 5.16319 5.24894 5.29051 5.40278 5.52324 5.65031 5.72663 5.77224 5.87960 5.88967 5.96650 6.12318 6.41907 6.52403 6.57307 6.64085 6.78188 6.90432 7.13714 7.50962 7.57527 7.76859 7.78619 8.34863 8.38114 8.49931 8.66093 9.27142 10.75662 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.002665 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.400620 B =10504.950038 C =11339.339965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.170 3.830 3 C -0.331 4.331 4 C 0.614 3.386 5 O -0.539 6.539 6 N -0.678 5.678 7 C 0.188 3.812 8 C 0.200 3.800 9 N -0.276 5.276 10 N -0.253 5.253 11 C 0.112 3.888 12 N -0.392 5.392 13 C 0.063 3.937 14 C -0.124 4.124 15 C -0.052 4.052 16 C -0.112 4.112 17 C 0.061 3.939 18 N -0.293 5.293 19 N -0.313 5.313 20 C 0.251 3.749 21 C -0.540 4.540 22 H 0.066 0.934 23 C 0.068 3.932 24 N -0.890 5.890 25 Si 0.907 3.093 26 H -0.270 1.270 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.412 0.588 33 H 0.227 0.773 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.177 0.823 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 26.455 8.588 27.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.347 4.347 4 C 0.407 3.593 5 O -0.416 6.416 6 N -0.331 5.331 7 C 0.092 3.908 8 C -0.052 4.052 9 N -0.121 5.121 10 N -0.092 5.092 11 C -0.170 4.170 12 N -0.074 5.074 13 C -0.058 4.058 14 C -0.146 4.146 15 C -0.060 4.060 16 C -0.169 4.169 17 C -0.127 4.127 18 N -0.113 5.113 19 N -0.089 5.089 20 C 0.134 3.866 21 C -0.578 4.578 22 H 0.085 0.915 23 C -0.136 4.136 24 N -0.528 5.528 25 Si 0.734 3.266 26 H -0.194 1.194 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.250 0.750 33 H 0.243 0.757 34 H 0.190 0.810 35 H 0.178 0.822 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.194 0.806 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.219 24.376 7.150 25.499 hybrid contribution -0.271 1.088 0.007 1.122 sum 1.948 25.464 7.157 26.522 Atomic orbital electron populations 1.20584 0.86788 1.03744 1.04089 1.21458 0.94943 0.86484 0.93857 1.19467 0.93314 0.91708 1.30190 1.17375 0.84669 0.83625 0.73644 1.90728 1.16548 1.84127 1.50196 1.42879 1.10686 1.01696 1.77837 1.15770 1.01974 0.85311 0.87774 1.22639 1.02881 0.83599 0.96031 1.75054 1.20254 1.18297 0.98522 1.74280 1.12075 0.96207 1.26660 1.26505 1.09581 1.03065 0.77835 1.43878 1.44040 1.11847 1.07589 1.21670 1.02504 0.99960 0.81704 1.20767 1.01656 0.93712 0.98439 1.20201 0.96749 0.94106 0.94973 1.20769 1.02382 1.00673 0.93053 1.23734 0.96225 0.92656 1.00059 1.77152 0.98566 1.12192 1.23368 1.49386 1.02474 1.08310 1.48742 1.19872 0.96427 0.70817 0.99513 1.21302 1.47296 0.98159 0.91032 0.91529 1.24918 0.94411 0.95979 0.98324 1.69919 1.44632 1.07147 1.31078 0.86274 0.77964 0.78881 0.83478 1.19430 1.20560 1.20539 0.89698 0.90752 0.88912 0.75001 0.75717 0.80959 0.82234 0.90058 0.90614 0.90312 0.80632 0.92442 0.92528 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.57 36.00 0.34 -1.38 16 2 C 0.17 3.47 7.01 -81.59 -0.57 2.90 16 3 C -0.33 -6.03 6.13 -105.07 -0.64 -6.68 16 4 C 0.61 10.39 7.13 -12.53 -0.09 10.30 16 5 O -0.54 -10.64 14.82 5.26 0.08 -10.57 16 6 N -0.68 -8.92 4.37 -10.77 -0.05 -8.97 16 7 C 0.19 2.36 5.28 -83.63 -0.44 1.92 16 8 C 0.20 2.84 7.86 -156.00 -1.23 1.62 16 9 N -0.28 -4.75 12.30 31.23 0.38 -4.37 16 10 N -0.25 -3.84 12.19 29.84 0.36 -3.48 16 11 C 0.11 1.15 12.97 -89.19 -1.16 -0.01 16 12 N -0.39 -4.06 2.95 -63.83 -0.19 -4.25 16 13 C 0.06 0.39 10.99 -16.61 -0.18 0.20 16 14 C -0.12 -0.73 9.66 -39.92 -0.39 -1.12 16 15 C -0.05 -0.47 5.90 -104.37 -0.62 -1.09 16 16 C -0.11 -0.81 9.77 36.01 0.35 -0.46 16 17 C 0.06 1.04 11.51 -16.97 -0.20 0.84 16 18 N -0.29 -6.24 12.50 30.86 0.39 -5.86 16 19 N -0.31 -7.04 3.56 -57.77 -0.21 -7.25 16 20 C 0.25 6.24 5.97 -5.20 -0.03 6.20 16 21 C -0.54 -14.68 9.39 -34.44 -0.32 -15.01 16 22 H 0.07 1.88 7.81 -52.48 -0.41 1.47 16 23 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 24 N -0.89 -24.72 13.29 55.43 0.74 -23.98 16 25 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 30 H 0.07 1.31 7.05 -51.92 -0.37 0.94 16 31 H 0.09 1.61 6.50 -51.93 -0.34 1.28 16 32 H 0.41 4.31 7.79 -40.82 -0.32 3.99 16 33 H 0.23 1.05 8.06 -52.49 -0.42 0.62 16 34 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 35 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 38 H 0.08 0.76 6.91 -51.92 -0.36 0.40 16 39 H 0.18 2.12 7.51 -52.48 -0.39 1.72 16 40 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 367.02 15.07 5.53 5.53 Total: -1.00 -37.00 367.02 -7.89 -44.89 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -4.64 Total: 2.18 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -5.26 Total: -0.03 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 1.43 Total: -58.15 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.00 -7.89 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595732658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.583 kcal (2) G-P(sol) polarization free energy of solvation -37.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds