Wall clock time and date at job start Sat Apr 11 2020 05:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38056 * 126.29369 * 2 1 4 4 C 1.47404 * 126.41628 * 359.97438 * 3 2 1 5 5 O 1.21620 * 120.00104 * 359.97438 * 4 3 2 6 6 N 1.34776 * 119.99782 * 179.97438 * 4 3 2 7 7 C 1.39747 * 119.99947 * 184.88231 * 6 4 3 8 8 C 1.41387 * 120.44720 * 270.74892 * 7 6 4 9 9 N 1.32235 * 133.47651 * 359.97438 * 8 7 6 10 10 N 1.28683 * 109.47535 * 180.02562 * 9 8 7 11 11 C 1.30841 * 110.25351 * 359.97438 * 10 9 8 12 12 N 1.36021 * 107.49739 * 359.97438 * 11 10 9 13 13 C 1.36556 * 133.62074 * 179.97438 * 12 11 10 14 14 C 1.34954 * 120.64311 * 180.02562 * 13 12 11 15 15 C 1.36651 * 120.44388 * 90.46479 * 7 6 4 16 16 C 1.50700 * 120.16295 * 359.97438 * 15 7 6 17 17 C 1.41301 * 107.16610 * 180.24392 * 3 2 1 18 18 N 1.30450 * 108.02692 * 359.58946 * 17 3 2 19 19 N 1.34278 * 126.29481 * 180.02562 * 2 1 3 20 20 C 1.46496 * 125.75170 * 359.97284 * 19 2 1 21 21 C 1.50695 * 109.47195 * 90.00050 * 20 19 2 22 22 H 1.08003 * 120.00323 * 0.02562 * 21 20 19 23 23 C 1.37880 * 120.00269 * 179.97438 * 21 20 19 24 24 N 1.31512 * 119.99998 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00059 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47441 * 0.02562 * 25 23 21 27 27 H 1.48501 * 109.47171 * 120.00304 * 25 23 21 28 28 H 1.48493 * 109.47156 * 240.00321 * 25 23 21 29 29 H 1.08994 * 109.47507 * 89.97524 * 1 2 3 30 30 H 1.09008 * 109.47004 * 209.97457 * 1 2 3 31 31 H 1.09004 * 109.47193 * 329.97044 * 1 2 3 32 32 H 0.96998 * 120.00253 * 4.88836 * 6 4 3 33 33 H 1.07996 * 126.25118 * 179.97438 * 11 10 9 34 34 H 1.08003 * 119.67681 * 0.02562 * 13 12 11 35 35 H 1.07994 * 119.77902 * 180.02562 * 14 13 12 36 36 H 1.08992 * 109.47637 * 89.99255 * 16 15 7 37 37 H 1.08997 * 109.47146 * 210.00251 * 16 15 7 38 38 H 1.09009 * 109.46699 * 329.99978 * 16 15 7 39 39 H 1.08005 * 125.98443 * 179.72126 * 17 3 2 40 40 H 1.08995 * 109.47532 * 210.00397 * 20 19 2 41 41 H 1.09006 * 109.47291 * 330.00382 * 20 19 2 42 42 H 0.96999 * 120.00197 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8860 2.5202 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.8002 3.5105 0.0001 7 6 2.3881 4.8418 0.1026 8 6 2.0863 5.5899 -1.0587 9 7 2.1004 5.3093 -2.3508 10 7 1.7364 6.3471 -3.0191 11 6 1.4711 7.3384 -2.2075 12 7 1.6817 6.8957 -0.9387 13 6 1.5695 7.4759 0.2924 14 6 1.8527 6.7762 1.4110 15 6 2.2657 5.4365 1.3268 16 6 2.5745 4.6592 2.5804 17 6 3.6591 0.6497 -0.0057 18 7 3.6341 -0.6545 -0.0001 19 7 2.3018 -1.0823 -0.0005 20 6 1.8502 -2.4759 -0.0005 21 6 1.6948 -2.9535 -1.4213 22 1 1.9112 -2.2859 -2.2423 23 6 1.2774 -4.2432 -1.6734 24 7 1.0143 -5.0564 -0.6738 25 14 1.0855 -4.8355 -3.4346 26 1 1.4417 -3.7367 -4.3680 27 1 1.9850 -5.9938 -3.6681 28 1 -0.3221 -5.2469 -3.6679 29 1 -0.3634 0.0004 -1.0276 30 1 -0.3633 -0.8903 0.5135 31 1 -0.3634 0.8897 0.5143 32 1 3.7443 3.2991 -0.0708 33 1 1.1445 8.3275 -2.4928 34 1 1.2510 8.5049 0.3715 35 1 1.7588 7.2488 2.3775 36 1 3.6284 4.7784 2.8315 37 1 1.9611 5.0331 3.4001 38 1 2.3574 3.6037 2.4162 39 1 4.5450 1.2675 -0.0115 40 1 2.5849 -3.0960 0.5129 41 1 0.8917 -2.5473 0.5136 42 1 0.7203 -5.9636 -0.8511 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595732658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:08 Heat of formation + Delta-G solvation = 123.696104 kcal Electronic energy + Delta-G solvation = -28596.596245 eV Core-core repulsion = 24579.226085 eV Total energy + Delta-G solvation = -4017.370160 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.51613 -42.37936 -40.73119 -39.11019 -36.58814 -35.83342 -34.38411 -33.76865 -32.81666 -32.13329 -30.89191 -29.34491 -28.47501 -27.87410 -25.55378 -24.86864 -23.99755 -23.18878 -22.90238 -21.43412 -20.72866 -19.40146 -18.89960 -18.66236 -18.42114 -17.47138 -17.42624 -16.86148 -16.60520 -16.35385 -16.14534 -15.63442 -15.37688 -15.14299 -14.83649 -14.38555 -14.36208 -14.11457 -14.05787 -13.72657 -13.59918 -13.31357 -13.23465 -13.11884 -12.99406 -12.84567 -12.72494 -12.64763 -12.35641 -11.86133 -11.84788 -11.71959 -11.57733 -10.97073 -10.77716 -10.56648 -10.49686 -10.29132 -9.53042 -9.03791 -8.40149 -6.55876 -0.43500 0.14123 0.60465 1.23250 1.34064 1.35451 1.37330 1.47987 1.63851 1.76830 2.13750 2.30386 2.34154 2.45203 2.92101 3.09258 3.46089 3.70152 3.71608 3.74554 3.81837 3.96910 4.05930 4.18342 4.27996 4.44673 4.51630 4.58422 4.65826 4.75911 4.79053 4.86903 4.88083 4.96941 5.03745 5.11925 5.13189 5.26017 5.34705 5.47590 5.60536 5.66945 5.73268 5.97715 6.01045 6.40950 6.53091 6.80636 7.15242 7.24383 7.52404 8.68013 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018232 B = 0.002665 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.400620 B =10504.950038 C =11339.339965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.149 3.851 3 C -0.329 4.329 4 C 0.618 3.382 5 O -0.572 6.572 6 N -0.658 5.658 7 C 0.123 3.877 8 C 0.189 3.811 9 N -0.350 5.350 10 N -0.310 5.310 11 C 0.134 3.866 12 N -0.397 5.397 13 C 0.079 3.921 14 C -0.131 4.131 15 C -0.022 4.022 16 C -0.115 4.115 17 C 0.083 3.917 18 N -0.332 5.332 19 N -0.336 5.336 20 C 0.267 3.733 21 C -0.557 4.557 22 H 0.048 0.952 23 C 0.026 3.974 24 N -0.915 5.915 25 Si 0.969 3.031 26 H -0.277 1.277 27 H -0.271 1.271 28 H -0.267 1.267 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.421 0.579 33 H 0.279 0.721 34 H 0.229 0.771 35 H 0.209 0.791 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.050 0.950 39 H 0.227 0.773 40 H 0.035 0.965 41 H 0.053 0.947 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 30.266 10.095 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.013 3.987 3 C -0.344 4.344 4 C 0.409 3.591 5 O -0.452 6.452 6 N -0.309 5.309 7 C 0.027 3.973 8 C -0.064 4.064 9 N -0.194 5.194 10 N -0.146 5.146 11 C -0.149 4.149 12 N -0.078 5.078 13 C -0.041 4.041 14 C -0.152 4.152 15 C -0.030 4.030 16 C -0.171 4.171 17 C -0.104 4.104 18 N -0.151 5.151 19 N -0.113 5.113 20 C 0.149 3.851 21 C -0.595 4.595 22 H 0.066 0.934 23 C -0.175 4.175 24 N -0.553 5.553 25 Si 0.793 3.207 26 H -0.201 1.201 27 H -0.196 1.196 28 H -0.192 1.192 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.120 0.880 32 H 0.261 0.739 33 H 0.294 0.706 34 H 0.246 0.754 35 H 0.226 0.774 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.069 0.931 39 H 0.243 0.757 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.354 28.210 8.653 29.601 hybrid contribution -0.281 0.196 -0.292 0.450 sum 2.073 28.405 8.361 29.683 Atomic orbital electron populations 1.20546 0.85995 1.04194 1.03708 1.21913 0.95846 0.86741 0.94193 1.19746 0.93543 0.92253 1.28858 1.17185 0.84709 0.83677 0.73487 1.90693 1.17986 1.84551 1.51969 1.42506 1.10446 1.01903 1.76005 1.16041 1.07484 0.84978 0.88790 1.22801 1.02687 0.85438 0.95511 1.74889 1.23818 1.20213 1.00489 1.74101 1.14544 0.97361 1.28643 1.27453 1.06580 1.03618 0.77281 1.44151 1.43887 1.10725 1.09061 1.22772 0.99502 1.01981 0.79881 1.21362 1.00966 0.92228 1.00640 1.20662 0.92844 0.95481 0.94018 1.20890 1.04429 0.98819 0.92955 1.24502 0.97477 0.91639 0.96814 1.77102 0.98207 1.14264 1.25571 1.49116 1.03368 1.07741 1.51066 1.19387 0.95469 0.72236 0.98026 1.21422 1.47951 0.98485 0.91643 0.93362 1.25677 0.93806 0.95902 1.02138 1.69985 1.44835 1.07602 1.32836 0.85341 0.78558 0.78173 0.78641 1.20135 1.19586 1.19232 0.90437 0.90589 0.88015 0.73947 0.70571 0.75438 0.77421 0.87615 0.88041 0.93102 0.75666 0.94696 0.92953 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.33 9.57 71.23 0.68 -2.65 16 2 C 0.15 6.34 7.01 42.14 0.30 6.64 16 3 C -0.33 -12.21 6.13 -20.15 -0.12 -12.33 16 4 C 0.62 21.26 7.13 86.66 0.62 21.88 16 5 O -0.57 -23.20 14.82 -4.10 -0.06 -23.27 16 6 N -0.66 -17.22 4.37 -306.25 -1.34 -18.55 16 7 C 0.12 2.98 5.28 38.28 0.20 3.18 16 8 C 0.19 5.30 7.86 134.27 1.06 6.36 16 9 N -0.35 -12.56 12.30 -55.12 -0.68 -13.24 16 10 N -0.31 -9.58 12.19 -59.49 -0.73 -10.31 16 11 C 0.13 2.46 12.97 179.85 2.33 4.80 16 12 N -0.40 -7.18 2.95 -355.86 -1.05 -8.23 16 13 C 0.08 0.55 10.99 83.20 0.91 1.47 16 14 C -0.13 -0.87 9.66 22.05 0.21 -0.65 16 15 C -0.02 -0.33 5.90 -19.70 -0.12 -0.45 16 16 C -0.11 -1.29 9.77 71.24 0.70 -0.59 16 17 C 0.08 2.82 11.51 85.65 0.99 3.80 16 18 N -0.33 -14.49 12.50 -56.26 -0.70 -15.19 16 19 N -0.34 -15.83 3.56 -336.70 -1.20 -17.03 16 20 C 0.27 14.00 5.97 85.63 0.51 14.51 16 21 C -0.56 -31.53 9.39 25.60 0.24 -31.29 16 22 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 23 C 0.03 1.45 5.46 84.66 0.46 1.91 16 24 N -0.91 -51.71 13.29 21.45 0.28 -51.42 16 25 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 29 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.08 2.83 7.05 -2.38 -0.02 2.81 16 31 H 0.10 3.69 6.50 -2.38 -0.02 3.67 16 32 H 0.42 8.61 7.79 -92.71 -0.72 7.88 16 33 H 0.28 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.23 -1.02 8.06 -2.91 -0.02 -1.05 16 35 H 0.21 -0.63 8.06 -2.91 -0.02 -0.65 16 36 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.10 0.65 8.10 -2.39 -0.02 0.63 16 38 H 0.05 0.91 6.91 -2.38 -0.02 0.89 16 39 H 0.23 4.99 7.51 -2.91 -0.02 4.97 16 40 H 0.03 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 2.73 7.02 -2.38 -0.02 2.71 16 42 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -89.11 367.02 5.89 -83.22 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 0.37 Total: 11.39 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 8.97 Total: 16.59 kcal Atomic # 7 Polarization: -128.56 SS G_CDS: -5.41 Total: -133.97 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.06 Total: -23.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -89.11 5.89 -83.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595732658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.916 kcal (2) G-P(sol) polarization free energy of solvation -89.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds