Wall clock time and date at job start Sat Apr 11 2020 05:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35244 * 126.07136 * 2 1 4 4 C 1.40402 * 107.87035 * 180.14487 * 3 2 1 5 5 N 1.40180 * 125.97271 * 179.86304 * 4 3 2 6 6 C 1.34769 * 120.00222 * 359.71991 * 5 4 3 7 7 O 1.21622 * 120.00203 * 359.97438 * 6 5 4 8 8 N 1.34784 * 120.00106 * 179.97438 * 6 5 4 9 9 C 1.40828 * 120.00073 * 180.02562 * 8 6 5 10 10 C 1.38918 * 126.26480 * 359.96849 * 9 8 6 11 11 N 1.31591 * 109.01281 * 180.02562 * 10 9 8 12 12 N 1.40025 * 109.01546 * 0.02562 * 11 10 9 13 13 C 1.36736 * 132.44819 * 179.97438 * 12 11 10 14 14 C 1.34874 * 120.62720 * 180.02562 * 13 12 11 15 15 C 1.40555 * 120.46233 * 359.97091 * 14 13 12 16 16 C 1.36087 * 119.63951 * 359.97438 * 15 14 13 17 17 C 1.37445 * 107.48937 * 359.97438 * 12 11 10 18 18 N 1.31218 * 108.05266 * 359.60612 * 4 3 2 19 19 N 1.34964 * 126.06982 * 179.70849 * 2 1 3 20 20 C 1.46497 * 125.97914 * 359.97438 * 19 2 1 21 21 C 1.50694 * 109.47128 * 270.00244 * 20 19 2 22 22 H 1.08000 * 120.00201 * 359.97438 * 21 20 19 23 23 C 1.37882 * 119.99735 * 179.97438 * 21 20 19 24 24 N 1.31505 * 120.00245 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99714 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47226 * 89.99651 * 25 23 21 27 27 H 1.48496 * 109.46972 * 209.99802 * 25 23 21 28 28 H 1.48499 * 109.46784 * 329.99625 * 25 23 21 29 29 H 1.09003 * 109.46896 * 270.28974 * 1 2 3 30 30 H 1.09004 * 109.47269 * 30.29185 * 1 2 3 31 31 H 1.09000 * 109.47002 * 150.29179 * 1 2 3 32 32 H 1.08004 * 126.06421 * 359.97438 * 3 2 1 33 33 H 0.97008 * 119.99510 * 179.71614 * 5 4 3 34 34 H 0.96998 * 119.99431 * 359.97438 * 8 6 5 35 35 H 1.08003 * 125.49630 * 0.03011 * 10 9 8 36 36 H 1.08004 * 119.68715 * 359.97438 * 13 12 11 37 37 H 1.08003 * 119.76677 * 179.69766 * 14 13 12 38 38 H 1.08000 * 120.18414 * 179.97438 * 15 14 13 39 39 H 1.07995 * 120.38272 * 179.97438 * 16 15 14 40 40 H 1.08999 * 109.46812 * 30.00289 * 20 19 2 41 41 H 1.09004 * 109.47361 * 149.99698 * 20 19 2 42 42 H 0.97002 * 120.00643 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0932 0.0000 4 6 3.6371 0.6546 -0.0034 5 7 4.7736 1.4751 -0.0072 6 6 4.6369 2.8158 -0.0136 7 8 3.5273 3.3140 -0.0165 8 7 5.7297 3.6048 -0.0167 9 6 5.5868 5.0058 -0.0228 10 6 4.3891 5.7095 -0.0268 11 7 4.6498 6.9994 -0.0327 12 7 6.0378 7.1843 -0.0333 13 6 6.8193 8.3062 -0.0388 14 6 8.1644 8.2067 -0.0386 15 6 8.7856 6.9459 -0.0320 16 6 8.0220 5.8194 -0.0254 17 6 6.6203 5.9394 -0.0270 18 7 3.6337 -0.6576 0.0033 19 7 2.3016 -1.0909 0.0056 20 6 1.8501 -2.4845 0.0132 21 6 1.6957 -2.9548 1.4365 22 1 1.9127 -2.2829 2.2538 23 6 1.2775 -4.2429 1.6955 24 7 1.0128 -5.0609 0.7004 25 14 1.0855 -4.8255 3.4599 26 1 -0.2971 -4.5479 3.9252 27 1 1.3477 -6.2855 3.5303 28 1 2.0533 -4.1064 4.3267 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8874 -0.5184 31 1 -0.3633 -0.8926 -0.5093 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0778 -0.0052 34 1 6.6146 3.2075 -0.0140 35 1 3.4029 5.2692 -0.0252 36 1 6.3551 9.2814 -0.0442 37 1 8.7683 9.1020 -0.0479 38 1 9.8630 6.8714 -0.0323 39 1 8.4867 4.8446 -0.0208 40 1 0.8913 -2.5586 -0.5000 41 1 2.5846 -3.1073 -0.4977 42 1 0.7182 -5.9669 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626580671.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:29 Heat of formation + Delta-G solvation = 146.824450 kcal Electronic energy + Delta-G solvation = -27596.315735 eV Core-core repulsion = 23579.948496 eV Total energy + Delta-G solvation = -4016.367240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.07390 -42.29408 -40.98724 -38.15082 -36.46842 -35.95637 -35.29679 -33.40770 -32.79040 -32.51588 -31.61239 -29.04007 -28.28768 -27.83809 -25.17494 -24.65550 -23.81989 -23.78339 -22.00287 -21.42559 -20.97311 -19.32729 -18.78849 -18.66222 -17.63866 -17.43075 -17.23406 -17.02858 -16.76218 -16.46022 -16.25062 -15.93416 -15.79006 -15.69540 -15.25300 -14.73619 -14.33667 -14.27828 -13.78671 -13.72332 -13.51590 -13.16956 -13.07004 -12.94877 -12.82275 -12.77776 -12.65048 -12.33424 -12.23677 -12.07156 -11.80781 -11.55649 -11.37093 -11.09597 -10.74441 -10.71976 -10.30255 -9.57721 -9.12838 -8.31941 -8.07845 -6.48760 -0.09980 0.09302 0.89533 1.02260 1.35477 1.38501 1.39221 1.45302 1.51270 1.82925 2.04299 2.34789 2.36174 2.56156 2.98089 3.03774 3.42074 3.60747 3.82887 3.89949 4.01362 4.17757 4.22634 4.37019 4.44965 4.60899 4.73667 4.74460 4.79666 4.89631 4.91708 4.99994 5.04873 5.13435 5.19127 5.29305 5.34181 5.55027 5.55495 5.70282 5.79632 5.83002 5.93191 5.96851 6.28340 6.48320 6.62858 6.71687 7.10135 7.21947 7.33089 8.74373 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025917 B = 0.001978 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.126520 B =14152.090429 C =14578.110104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.087 3.913 3 C -0.296 4.296 4 C 0.293 3.707 5 N -0.628 5.628 6 C 0.715 3.285 7 O -0.585 6.585 8 N -0.626 5.626 9 C -0.020 4.020 10 C 0.060 3.940 11 N -0.345 5.345 12 N -0.278 5.278 13 C 0.083 3.917 14 C -0.143 4.143 15 C -0.072 4.072 16 C -0.124 4.124 17 C 0.075 3.925 18 N -0.357 5.357 19 N -0.343 5.343 20 C 0.275 3.725 21 C -0.551 4.551 22 H 0.049 0.951 23 C 0.022 3.978 24 N -0.918 5.918 25 Si 0.971 3.029 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.276 1.276 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.168 0.832 33 H 0.424 0.576 34 H 0.425 0.575 35 H 0.200 0.800 36 H 0.187 0.813 37 H 0.195 0.805 38 H 0.179 0.821 39 H 0.169 0.831 40 H 0.052 0.948 41 H 0.025 0.975 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.363 26.046 -2.310 31.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.043 4.043 3 C -0.327 4.327 4 C 0.038 3.962 5 N -0.280 5.280 6 C 0.415 3.585 7 O -0.462 6.462 8 N -0.275 5.275 9 C -0.125 4.125 10 C -0.116 4.116 11 N -0.171 5.171 12 N -0.047 5.047 13 C -0.041 4.041 14 C -0.164 4.164 15 C -0.095 4.095 16 C -0.144 4.144 17 C -0.047 4.047 18 N -0.188 5.188 19 N -0.125 5.125 20 C 0.156 3.844 21 C -0.590 4.590 22 H 0.067 0.933 23 C -0.179 4.179 24 N -0.556 5.556 25 Si 0.795 3.205 26 H -0.190 1.190 27 H -0.199 1.199 28 H -0.201 1.201 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.186 0.814 33 H 0.262 0.738 34 H 0.263 0.737 35 H 0.216 0.784 36 H 0.204 0.796 37 H 0.212 0.788 38 H 0.197 0.803 39 H 0.186 0.814 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.329 26.247 -2.378 31.003 hybrid contribution 0.278 -1.387 0.711 1.583 sum 16.607 24.860 -1.666 29.943 Atomic orbital electron populations 1.20464 0.85443 1.04172 1.03910 1.21725 0.96618 0.86463 0.99531 1.21419 0.89898 0.99969 1.21438 1.18852 0.87818 0.88858 1.00653 1.41124 1.07422 1.03163 1.76263 1.15479 0.84540 0.80223 0.78286 1.90731 1.24994 1.73217 1.57222 1.41197 1.08231 1.01972 1.76114 1.17068 0.92218 0.82484 1.20708 1.24313 1.00497 0.89215 0.97544 1.77903 0.88197 1.18011 1.32975 1.46200 1.05708 1.05890 1.46898 1.22205 0.91362 0.89609 1.00912 1.21449 0.91705 1.01117 1.02127 1.21689 1.02625 0.90810 0.94423 1.20899 0.87556 1.02711 1.03199 1.19070 0.94229 0.85091 1.06313 1.77174 1.00047 1.09597 1.31941 1.48758 1.01643 1.07477 1.54631 1.19246 0.94958 0.72441 0.97745 1.21432 1.47416 0.98335 0.91788 0.93267 1.25723 0.94023 0.95922 1.02196 1.69996 1.45080 1.07442 1.33070 0.85365 0.78929 0.77546 0.78697 1.19021 1.19910 1.20112 0.89865 0.87632 0.91284 0.81442 0.73822 0.73686 0.78374 0.79635 0.78821 0.80337 0.81404 0.92998 0.95669 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.24 0.72 -2.07 16 2 C 0.09 3.71 6.92 41.39 0.29 4.00 16 3 C -0.30 -12.26 9.52 22.11 0.21 -12.05 16 4 C 0.29 11.94 8.11 133.32 1.08 13.02 16 5 N -0.63 -18.97 5.45 -321.21 -1.75 -20.72 16 6 C 0.71 21.06 8.51 179.05 1.52 22.59 16 7 O -0.58 -20.93 10.63 -4.10 -0.04 -20.97 16 8 N -0.63 -13.48 5.48 -316.08 -1.73 -15.21 16 9 C -0.02 -0.49 7.02 38.11 0.27 -0.22 16 10 C 0.06 1.77 10.79 84.89 0.92 2.68 16 11 N -0.34 -9.67 12.66 -57.24 -0.72 -10.40 16 12 N -0.28 -5.86 3.91 -187.27 -0.73 -6.59 16 13 C 0.08 0.96 11.20 83.16 0.93 1.90 16 14 C -0.14 -0.68 9.98 22.06 0.22 -0.46 16 15 C -0.07 -0.35 10.08 22.33 0.23 -0.12 16 16 C -0.12 -1.27 10.10 22.37 0.23 -1.04 16 17 C 0.08 1.46 6.83 39.11 0.27 1.73 16 18 N -0.36 -16.75 12.59 -54.44 -0.69 -17.44 16 19 N -0.34 -16.69 3.59 -338.46 -1.22 -17.91 16 20 C 0.27 14.62 5.99 85.63 0.51 15.13 16 21 C -0.55 -31.07 9.39 25.60 0.24 -30.83 16 22 H 0.05 2.87 7.81 -2.91 -0.02 2.84 16 23 C 0.02 1.23 5.46 84.66 0.46 1.69 16 24 N -0.92 -51.96 13.28 21.45 0.28 -51.68 16 25 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 29 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 30 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.07 2.39 7.07 -2.39 -0.02 2.38 16 32 H 0.17 6.71 5.91 -2.91 -0.02 6.70 16 33 H 0.42 9.69 8.84 -92.70 -0.82 8.87 16 34 H 0.42 5.54 8.84 -92.71 -0.82 4.72 16 35 H 0.20 6.38 5.88 -2.91 -0.02 6.37 16 36 H 0.19 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.19 -0.65 8.06 -2.91 -0.02 -0.67 16 38 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 39 H 0.17 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.05 2.73 7.04 -2.39 -0.02 2.72 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -79.82 364.82 2.98 -76.84 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -0.53 Total: 22.80 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 8.09 Total: 15.93 kcal Atomic # 7 Polarization: -133.38 SS G_CDS: -6.56 Total: -139.94 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.04 Total: -20.97 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -79.82 2.98 -76.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626580671.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.660 kcal (2) G-P(sol) polarization free energy of solvation -79.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds