Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 115.54889 * 2 1 4 4 N 1.46501 * 109.47299 * 64.00477 * 3 2 1 5 5 C 1.34776 * 119.99951 * 185.68341 * 4 3 2 6 6 O 1.21585 * 120.00329 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99785 * 179.72021 * 7 5 4 9 9 C 1.50703 * 109.47121 * 180.27483 * 8 7 5 10 10 C 1.38318 * 119.96708 * 269.72490 * 9 8 7 11 11 C 1.38277 * 120.13824 * 179.76285 * 10 9 8 12 12 C 1.38123 * 120.06983 * 0.51805 * 11 10 9 13 13 C 1.38853 * 119.92647 * 359.73989 * 12 11 10 14 14 O 1.35758 * 120.06689 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99749 * 354.05452 * 14 13 12 16 16 H 1.08001 * 120.00289 * 354.51613 * 15 14 13 17 17 C 1.38658 * 119.99771 * 174.50848 * 15 14 13 18 18 N 1.31556 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46753 * 90.00419 * 19 17 15 21 21 H 1.48498 * 109.47353 * 210.00338 * 19 17 15 22 22 H 1.48496 * 109.47010 * 330.00860 * 19 17 15 23 23 C 1.38082 * 119.96235 * 90.00397 * 9 8 7 24 24 C 1.52992 * 117.49540 * 214.33126 * 2 1 3 25 25 C 1.52995 * 117.49745 * 145.67162 * 2 1 3 26 26 F 1.39904 * 117.49512 * 215.00310 * 25 2 1 27 27 F 1.39893 * 117.49952 * 359.97438 * 25 2 1 28 28 H 1.08999 * 109.47188 * 60.99770 * 1 2 3 29 29 H 1.09001 * 109.47486 * 181.00488 * 1 2 3 30 30 H 1.09007 * 109.47078 * 301.00334 * 1 2 3 31 31 H 1.09001 * 109.47487 * 304.00274 * 3 2 1 32 32 H 1.08994 * 109.46984 * 184.00603 * 3 2 1 33 33 H 0.96998 * 119.99705 * 5.67961 * 4 3 2 34 34 H 0.97000 * 120.00649 * 0.02562 * 7 5 4 35 35 H 1.09000 * 109.47262 * 300.28003 * 8 7 5 36 36 H 1.09004 * 109.46810 * 60.27750 * 8 7 5 37 37 H 1.08007 * 119.93085 * 0.02562 * 10 9 8 38 38 H 1.08003 * 119.96853 * 180.25430 * 11 10 9 39 39 H 1.07995 * 120.03518 * 179.72339 * 12 11 10 40 40 H 0.96998 * 120.00164 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.03389 * 359.95451 * 23 9 8 42 42 H 1.09004 * 117.50355 * 359.97438 * 24 2 1 43 43 H 1.09004 * 117.49798 * 145.00140 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8543 2.0821 1.2415 5 6 2.2316 3.3644 1.4138 6 8 2.8508 3.9388 0.5393 7 7 1.9224 4.0101 2.5557 8 6 2.3379 5.4021 2.7457 9 6 1.8772 5.8839 4.0973 10 6 0.6380 6.4835 4.2316 11 6 0.2098 6.9224 5.4709 12 6 1.0232 6.7729 6.5771 13 6 2.2700 6.1762 6.4446 14 8 3.0721 6.0283 7.5298 15 6 2.6536 6.5908 8.6815 16 1 1.7642 7.2034 8.6913 17 6 3.3650 6.3827 9.8533 18 7 4.4485 5.6368 9.8413 19 14 2.7856 7.1627 11.4487 20 1 1.8545 6.2370 12.1426 21 1 3.9564 7.4331 12.3213 22 1 2.0854 8.4377 11.1506 23 6 2.6951 5.7315 5.1993 24 6 2.2363 -1.1207 -0.7654 25 6 2.2364 -1.1207 0.7653 26 9 3.4363 -0.8048 1.4116 27 9 1.4339 -2.0667 1.4120 28 1 -0.3633 0.4982 -0.8988 29 1 -0.3634 -1.0275 0.0180 30 1 -0.3634 0.5294 0.8809 31 1 1.8281 1.9561 -0.8519 32 1 3.2714 1.2660 -0.0718 33 1 1.3606 1.6238 1.9393 34 1 1.4287 3.5518 3.2537 35 1 3.4243 5.4683 2.6872 36 1 1.8936 6.0232 1.9678 37 1 0.0018 6.6053 3.3673 38 1 -0.7601 7.3865 5.5733 39 1 0.6900 7.1200 7.5440 40 1 4.9464 5.4915 10.6609 41 1 3.6642 5.2666 5.0931 42 1 1.6111 -1.8583 -1.2686 43 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647284477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -102.896257 kcal Electronic energy + Delta-G solvation = -28227.634895 eV Core-core repulsion = 23717.457015 eV Total energy + Delta-G solvation = -4510.177880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.02937 -47.69595 -40.11952 -39.11582 -38.14996 -36.81386 -34.48592 -34.17606 -32.34082 -30.79631 -29.26815 -29.06053 -27.22689 -25.61634 -24.82215 -23.08542 -21.72143 -21.00632 -20.79405 -20.40428 -18.67119 -18.08775 -17.65257 -17.18286 -16.80035 -16.40217 -16.12480 -15.59615 -15.12835 -14.76074 -14.69191 -14.52860 -14.36148 -14.33562 -14.00039 -13.97431 -13.79904 -13.63394 -13.50174 -13.41712 -13.15670 -12.80331 -12.64211 -12.38090 -12.16180 -11.91649 -11.66758 -11.40024 -11.20239 -10.96406 -10.81556 -10.68583 -10.46750 -10.28490 -10.19118 -9.44600 -9.36861 -8.89776 -8.80570 -8.25733 -7.33609 -6.49769 -4.09215 1.84369 2.25515 2.38449 2.58670 2.87528 3.10085 3.10545 3.15610 3.21747 3.67464 3.73113 3.92154 4.15492 4.17544 4.28660 4.56228 4.83930 4.93411 4.94722 5.05688 5.11756 5.19737 5.26567 5.27670 5.30109 5.40722 5.54140 5.61280 5.76420 5.84962 5.91884 6.07808 6.24401 6.24991 6.53706 6.55268 6.81430 6.85610 7.00268 7.18683 7.26597 7.34981 7.70495 7.94231 7.98738 8.58284 8.95532 9.64444 10.68012 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002092 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.702289 B =13378.444875 C =14444.027641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.141 4.141 3 C 0.176 3.824 4 N -0.747 5.747 5 C 0.706 3.294 6 O -0.594 6.594 7 N -0.735 5.735 8 C 0.187 3.813 9 C -0.073 4.073 10 C -0.194 4.194 11 C -0.077 4.077 12 C -0.225 4.225 13 C 0.149 3.851 14 O -0.176 6.176 15 C -0.393 4.393 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.861 5.861 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.267 1.267 23 C -0.170 4.170 24 C -0.158 4.158 25 C 0.199 3.801 26 F -0.154 7.154 27 F -0.158 7.158 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.397 0.603 34 H 0.399 0.601 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.109 0.891 39 H 0.127 0.873 40 H 0.271 0.729 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.964 -11.749 -19.411 24.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.142 4.142 3 C 0.051 3.949 4 N -0.403 5.403 5 C 0.406 3.594 6 O -0.473 6.473 7 N -0.390 5.390 8 C 0.064 3.936 9 C -0.074 4.074 10 C -0.214 4.214 11 C -0.095 4.095 12 C -0.245 4.245 13 C 0.096 3.904 14 O -0.079 6.079 15 C -0.469 4.469 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.495 5.495 19 Si 0.766 3.234 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.190 4.190 24 C -0.196 4.196 25 C 0.163 3.837 26 F -0.134 7.134 27 F -0.139 7.139 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.127 0.873 39 H 0.145 0.855 40 H 0.081 0.919 41 H 0.136 0.864 42 H 0.145 0.855 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.947 -11.396 -19.976 24.332 hybrid contribution -0.723 -0.214 1.843 1.991 sum -8.670 -11.609 -18.133 23.211 Atomic orbital electron populations 1.21360 0.89340 1.03319 1.03658 1.23206 0.97758 0.92058 1.01219 1.20585 0.99309 0.87644 0.87370 1.44949 1.62821 1.12115 1.20455 1.15861 0.79752 0.80854 0.82913 1.90919 1.45995 1.67122 1.43267 1.45251 1.61282 1.14347 1.18083 1.20009 0.99810 0.79928 0.93867 1.19275 0.94852 1.00127 0.93135 1.20478 0.96813 1.06947 0.97130 1.20747 0.98302 0.98017 0.92457 1.21244 0.95671 1.07884 0.99663 1.19348 0.89546 0.92961 0.88586 1.84001 1.42091 1.66264 1.15573 1.21315 1.12633 1.29183 0.83749 0.89075 1.25303 0.95635 0.96827 0.98736 1.70035 1.15248 1.35548 1.28693 0.85709 0.78389 0.79195 0.80139 1.19857 1.20208 1.19164 1.20098 1.01125 1.07640 0.90099 1.24456 1.04299 0.99697 0.91197 1.20124 0.81167 0.93615 0.88842 1.93075 1.44390 1.92544 1.83395 1.93028 1.72168 1.65169 1.83509 0.90362 0.91225 0.90993 0.89528 0.90864 0.76910 0.76677 0.90994 0.91064 0.87497 0.87308 0.85484 0.91931 0.86375 0.85468 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.39 37.16 0.35 -0.25 16 2 C -0.14 -0.89 2.14 -154.51 -0.33 -1.22 16 3 C 0.18 1.50 5.25 -4.04 -0.02 1.47 16 4 N -0.75 -7.54 5.43 -65.23 -0.35 -7.90 16 5 C 0.71 9.71 8.57 -86.92 -0.74 8.97 16 6 O -0.59 -10.34 16.33 5.29 0.09 -10.25 16 7 N -0.74 -9.68 5.55 -66.41 -0.37 -10.05 16 8 C 0.19 2.76 5.80 -5.19 -0.03 2.73 16 9 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 10 C -0.19 -3.13 9.70 -39.54 -0.38 -3.52 16 11 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 12 C -0.23 -4.68 9.13 -39.40 -0.36 -5.04 16 13 C 0.15 3.48 6.65 -39.11 -0.26 3.22 16 14 O -0.18 -4.91 9.76 0.03 0.00 -4.91 16 15 C -0.39 -10.75 9.44 30.89 0.29 -10.46 16 16 H 0.09 2.30 5.30 -52.49 -0.28 2.02 16 17 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -24.99 13.67 55.48 0.76 -24.23 16 19 Si 0.94 20.20 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 21 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 C -0.17 -3.43 9.65 -39.39 -0.38 -3.81 16 24 C -0.16 -0.77 9.91 -26.70 -0.26 -1.03 16 25 C 0.20 1.62 5.14 -26.70 -0.14 1.48 16 26 F -0.15 -1.66 16.96 2.25 0.04 -1.62 16 27 F -0.16 -1.47 16.85 2.25 0.04 -1.43 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 7.71 -51.93 -0.40 -0.08 16 30 H 0.07 0.38 7.74 -51.92 -0.40 -0.02 16 31 H 0.09 0.73 8.13 -51.93 -0.42 0.31 16 32 H 0.07 0.70 7.85 -51.93 -0.41 0.29 16 33 H 0.40 3.31 8.11 -40.82 -0.33 2.98 16 34 H 0.40 4.67 8.48 -40.82 -0.35 4.33 16 35 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 36 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.13 2.66 5.72 -52.49 -0.30 2.36 16 40 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 42 H 0.13 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 379.09 15.07 5.71 5.71 Total: -1.00 -33.08 379.09 -7.82 -40.90 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.40 Total: 8.59 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -3.31 Total: -9.98 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.04 Total: -42.17 kcal Atomic # 8 Polarization: -15.25 SS G_CDS: 0.09 Total: -15.16 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.17 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.08 -7.82 -40.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647284477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.997 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds