Wall clock time and date at job start Sat Apr 11 2020 05:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 115.54889 * 2 1 4 4 N 1.46501 * 109.47299 * 64.00477 * 3 2 1 5 5 C 1.34776 * 119.99951 * 185.68341 * 4 3 2 6 6 O 1.21585 * 120.00329 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99702 * 179.97438 * 5 4 3 8 8 C 1.46506 * 119.99785 * 179.72021 * 7 5 4 9 9 C 1.50703 * 109.47121 * 180.27483 * 8 7 5 10 10 C 1.38318 * 119.96708 * 269.72490 * 9 8 7 11 11 C 1.38277 * 120.13824 * 179.76285 * 10 9 8 12 12 C 1.38123 * 120.06983 * 0.51805 * 11 10 9 13 13 C 1.38853 * 119.92647 * 359.73989 * 12 11 10 14 14 O 1.35758 * 120.06689 * 179.97438 * 13 12 11 15 15 C 1.34828 * 116.99749 * 354.05452 * 14 13 12 16 16 H 1.08001 * 120.00289 * 354.51613 * 15 14 13 17 17 C 1.38658 * 119.99771 * 174.50848 * 15 14 13 18 18 N 1.31556 * 119.99884 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00147 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46753 * 90.00419 * 19 17 15 21 21 H 1.48498 * 109.47353 * 210.00338 * 19 17 15 22 22 H 1.48496 * 109.47010 * 330.00860 * 19 17 15 23 23 C 1.38082 * 119.96235 * 90.00397 * 9 8 7 24 24 C 1.52992 * 117.49540 * 214.33126 * 2 1 3 25 25 C 1.52995 * 117.49745 * 145.67162 * 2 1 3 26 26 F 1.39904 * 117.49512 * 215.00310 * 25 2 1 27 27 F 1.39893 * 117.49952 * 359.97438 * 25 2 1 28 28 H 1.08999 * 109.47188 * 60.99770 * 1 2 3 29 29 H 1.09001 * 109.47486 * 181.00488 * 1 2 3 30 30 H 1.09007 * 109.47078 * 301.00334 * 1 2 3 31 31 H 1.09001 * 109.47487 * 304.00274 * 3 2 1 32 32 H 1.08994 * 109.46984 * 184.00603 * 3 2 1 33 33 H 0.96998 * 119.99705 * 5.67961 * 4 3 2 34 34 H 0.97000 * 120.00649 * 0.02562 * 7 5 4 35 35 H 1.09000 * 109.47262 * 300.28003 * 8 7 5 36 36 H 1.09004 * 109.46810 * 60.27750 * 8 7 5 37 37 H 1.08007 * 119.93085 * 0.02562 * 10 9 8 38 38 H 1.08003 * 119.96853 * 180.25430 * 11 10 9 39 39 H 1.07995 * 120.03518 * 179.72339 * 12 11 10 40 40 H 0.96998 * 120.00164 * 179.97438 * 18 17 15 41 41 H 1.07999 * 120.03389 * 359.95451 * 23 9 8 42 42 H 1.09004 * 117.50355 * 359.97438 * 24 2 1 43 43 H 1.09004 * 117.49798 * 145.00140 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 7 1.8543 2.0821 1.2415 5 6 2.2316 3.3644 1.4138 6 8 2.8508 3.9388 0.5393 7 7 1.9224 4.0101 2.5557 8 6 2.3379 5.4021 2.7457 9 6 1.8772 5.8839 4.0973 10 6 0.6380 6.4835 4.2316 11 6 0.2098 6.9224 5.4709 12 6 1.0232 6.7729 6.5771 13 6 2.2700 6.1762 6.4446 14 8 3.0721 6.0283 7.5298 15 6 2.6536 6.5908 8.6815 16 1 1.7642 7.2034 8.6913 17 6 3.3650 6.3827 9.8533 18 7 4.4485 5.6368 9.8413 19 14 2.7856 7.1627 11.4487 20 1 1.8545 6.2370 12.1426 21 1 3.9564 7.4331 12.3213 22 1 2.0854 8.4377 11.1506 23 6 2.6951 5.7315 5.1993 24 6 2.2363 -1.1207 -0.7654 25 6 2.2364 -1.1207 0.7653 26 9 3.4363 -0.8048 1.4116 27 9 1.4339 -2.0667 1.4120 28 1 -0.3633 0.4982 -0.8988 29 1 -0.3634 -1.0275 0.0180 30 1 -0.3634 0.5294 0.8809 31 1 1.8281 1.9561 -0.8519 32 1 3.2714 1.2660 -0.0718 33 1 1.3606 1.6238 1.9393 34 1 1.4287 3.5518 3.2537 35 1 3.4243 5.4683 2.6872 36 1 1.8936 6.0232 1.9678 37 1 0.0018 6.6053 3.3673 38 1 -0.7601 7.3865 5.5733 39 1 0.6900 7.1200 7.5440 40 1 4.9464 5.4915 10.6609 41 1 3.6642 5.2666 5.0931 42 1 1.6111 -1.8583 -1.2686 43 1 3.1713 -0.8746 -1.2689 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647284477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:34 Heat of formation + Delta-G solvation = -125.074574 kcal Electronic energy + Delta-G solvation = -28228.596619 eV Core-core repulsion = 23717.457015 eV Total energy + Delta-G solvation = -4511.139604 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.69145 -48.38342 -41.24191 -40.70100 -38.89308 -38.38121 -35.74958 -35.11321 -34.28748 -32.18382 -30.78116 -29.63655 -28.17696 -27.36584 -26.17571 -23.61906 -23.26140 -22.48174 -21.97538 -21.02013 -19.87816 -19.30172 -18.84423 -18.57114 -17.76053 -17.17496 -17.00899 -16.81940 -16.62244 -16.21243 -16.10842 -15.65403 -15.56504 -15.36668 -15.06402 -15.00625 -14.72471 -14.61658 -14.49735 -14.31588 -14.00485 -13.88387 -13.83915 -13.61054 -13.29906 -13.13836 -13.03361 -12.57241 -12.46831 -12.33329 -12.26744 -12.10793 -11.75706 -11.42545 -11.23092 -10.81443 -10.78116 -10.42318 -9.82697 -9.76641 -9.03514 -8.47677 -6.16154 0.36510 0.70815 1.35243 1.43836 1.52710 1.60603 2.01649 2.11715 2.14627 2.17253 2.80228 3.08043 3.18835 3.20650 3.37967 3.45071 3.60361 3.66265 3.83671 4.10114 4.28493 4.32433 4.43728 4.53839 4.56835 4.60325 4.65667 4.71562 4.74305 4.79591 4.83354 4.88727 5.02297 5.11013 5.23237 5.25938 5.36671 5.41549 5.62314 5.71163 5.72215 5.90374 6.01212 6.17520 6.97165 6.99284 7.51235 7.77978 8.75617 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.002092 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.702289 B =13378.444875 C =14444.027641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 C 0.173 3.827 4 N -0.734 5.734 5 C 0.705 3.295 6 O -0.631 6.631 7 N -0.730 5.730 8 C 0.194 3.806 9 C -0.058 4.058 10 C -0.166 4.166 11 C -0.070 4.070 12 C -0.233 4.233 13 C 0.111 3.889 14 O -0.233 6.233 15 C -0.411 4.411 16 H 0.103 0.897 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.018 2.982 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.252 1.252 23 C -0.181 4.181 24 C -0.130 4.130 25 C 0.165 3.835 26 F -0.177 7.177 27 F -0.169 7.169 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.407 0.593 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.088 0.912 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.120 0.880 40 H 0.272 0.728 41 H 0.105 0.895 42 H 0.153 0.847 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.171 -11.468 -21.658 27.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.132 4.132 3 C 0.049 3.951 4 N -0.390 5.390 5 C 0.405 3.595 6 O -0.513 6.513 7 N -0.386 5.386 8 C 0.070 3.930 9 C -0.059 4.059 10 C -0.184 4.184 11 C -0.088 4.088 12 C -0.253 4.253 13 C 0.061 3.939 14 O -0.140 6.140 15 C -0.487 4.487 16 H 0.121 0.879 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.187 1.187 21 H -0.198 1.198 22 H -0.175 1.175 23 C -0.201 4.201 24 C -0.168 4.168 25 C 0.128 3.872 26 F -0.157 7.157 27 F -0.149 7.149 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.242 0.758 34 H 0.243 0.757 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.123 0.877 42 H 0.171 0.829 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.215 -11.143 -22.265 27.307 hybrid contribution 0.137 -0.333 2.178 2.208 sum -11.077 -11.477 -20.087 25.650 Atomic orbital electron populations 1.21407 0.88052 1.03959 1.04159 1.23156 0.98464 0.90612 1.00951 1.20688 0.98951 0.88798 0.86691 1.44889 1.61888 1.10931 1.21300 1.15966 0.79456 0.81654 0.82431 1.90895 1.47686 1.68212 1.44485 1.45077 1.61292 1.13873 1.18316 1.19879 0.99285 0.81046 0.92780 1.19446 0.94596 0.99030 0.92812 1.21005 0.96094 1.03275 0.98072 1.21174 0.99209 0.96958 0.91422 1.21381 0.95279 1.07740 1.00897 1.19879 0.90801 0.94816 0.88455 1.83962 1.44489 1.68747 1.16792 1.21810 1.13051 1.29642 0.84220 0.87943 1.26600 0.95616 0.97395 1.02552 1.70188 1.17456 1.38574 1.29796 0.84585 0.78063 0.78728 0.74852 1.18749 1.19831 1.17519 1.20226 1.01460 1.08044 0.90391 1.24646 1.04833 0.98633 0.88641 1.20659 0.80945 0.95030 0.90545 1.93020 1.45793 1.92819 1.84083 1.92997 1.72370 1.65601 1.83975 0.88979 0.90514 0.91391 0.88974 0.92078 0.75773 0.75717 0.92288 0.89390 0.83228 0.83265 0.86194 0.91887 0.87671 0.82896 0.84321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.39 71.98 0.68 -0.21 16 2 C -0.13 -1.38 2.14 -52.19 -0.11 -1.49 16 3 C 0.17 2.70 5.25 86.38 0.45 3.15 16 4 N -0.73 -13.83 5.43 -478.55 -2.60 -16.43 16 5 C 0.71 18.44 8.57 179.06 1.53 19.98 16 6 O -0.63 -21.33 16.33 -3.98 -0.07 -21.40 16 7 N -0.73 -17.97 5.55 -482.28 -2.68 -20.64 16 8 C 0.19 5.34 5.80 85.63 0.50 5.84 16 9 C -0.06 -1.84 5.25 -19.88 -0.10 -1.94 16 10 C -0.17 -4.62 9.70 22.30 0.22 -4.40 16 11 C -0.07 -2.16 10.04 22.25 0.22 -1.94 16 12 C -0.23 -9.59 9.13 22.39 0.20 -9.39 16 13 C 0.11 5.34 6.65 22.58 0.15 5.49 16 14 O -0.23 -13.86 9.76 -22.81 -0.22 -14.09 16 15 C -0.41 -23.60 9.44 67.92 0.64 -22.96 16 16 H 0.10 5.35 5.30 -2.91 -0.02 5.33 16 17 C -0.02 -1.37 5.49 84.83 0.47 -0.90 16 18 N -0.92 -56.68 13.67 21.61 0.30 -56.38 16 19 Si 1.02 42.45 29.55 68.60 2.03 44.48 16 20 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 21 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 22 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 23 C -0.18 -7.48 9.65 22.39 0.22 -7.27 16 24 C -0.13 -0.93 9.91 30.62 0.30 -0.62 16 25 C 0.16 2.51 5.14 30.62 0.16 2.66 16 26 F -0.18 -3.84 16.96 44.97 0.76 -3.08 16 27 F -0.17 -3.01 16.85 44.97 0.76 -2.25 16 28 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.50 7.71 -2.39 -0.02 0.48 16 30 H 0.07 0.57 7.74 -2.38 -0.02 0.55 16 31 H 0.09 1.38 8.13 -2.39 -0.02 1.36 16 32 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 33 H 0.41 6.19 8.11 -92.71 -0.75 5.44 16 34 H 0.41 8.75 8.48 -92.71 -0.79 7.97 16 35 H 0.06 1.81 8.08 -2.39 -0.02 1.79 16 36 H 0.09 2.20 8.08 -2.38 -0.02 2.18 16 37 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 38 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.12 5.03 5.72 -2.91 -0.02 5.02 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.11 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.15 0.34 8.14 -2.38 -0.02 0.32 16 43 H 0.14 0.70 8.14 -2.38 -0.02 0.68 16 Total: -1.00 -77.85 379.09 3.34 -74.50 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: -0.46 Total: 29.29 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.52 Total: -14.01 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -4.98 Total: -93.45 kcal Atomic # 8 Polarization: -35.19 SS G_CDS: -0.29 Total: -35.48 kcal Atomic # 9 Polarization: -6.85 SS G_CDS: 1.52 Total: -5.33 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -77.85 3.34 -74.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647284477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.570 kcal (2) G-P(sol) polarization free energy of solvation -77.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds