Wall clock time and date at job start Sat Apr 11 2020 05:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30459 * 125.98925 * 2 1 4 4 N 1.39935 * 108.89780 * 180.18151 * 3 2 1 5 5 H 0.96997 * 125.75157 * 179.84567 * 4 3 2 6 6 C 1.34259 * 108.49004 * 359.58381 * 4 3 2 7 7 C 1.38045 * 107.41799 * 0.24411 * 6 4 3 8 8 C 1.47429 * 126.41187 * 180.02562 * 7 6 4 9 9 O 1.21606 * 120.00567 * 142.73519 * 8 7 6 10 10 N 1.34783 * 119.99866 * 322.72422 * 8 7 6 11 11 C 1.46497 * 120.00086 * 4.56531 * 10 8 7 12 12 C 1.46502 * 119.99787 * 184.55642 * 10 8 7 13 13 H 1.09003 * 109.47202 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.47205 * 240.00315 * 12 10 8 15 15 C 1.53003 * 109.46855 * 120.00427 * 12 10 8 16 16 N 1.46498 * 109.47010 * 304.99914 * 15 12 10 17 17 C 1.34784 * 119.99897 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99546 * 0.02562 * 17 16 15 19 19 C 1.50691 * 119.99891 * 179.97438 * 17 16 15 20 20 S 1.81004 * 109.46865 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99996 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00081 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00230 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00080 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99809 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46975 * 89.99739 * 25 23 21 27 27 H 1.48498 * 109.46833 * 209.99977 * 25 23 21 28 28 H 1.48498 * 109.46945 * 329.99649 * 25 23 21 29 29 H 1.08996 * 109.47228 * 270.26202 * 1 2 3 30 30 H 1.08998 * 109.47099 * 30.27091 * 1 2 3 31 31 H 1.09004 * 109.46566 * 150.25884 * 1 2 3 32 32 H 1.08002 * 126.29195 * 180.26047 * 6 4 3 33 33 H 1.08994 * 109.47384 * 84.78607 * 11 10 8 34 34 H 1.09000 * 109.46922 * 204.78830 * 11 10 8 35 35 H 1.09005 * 109.46904 * 324.78620 * 11 10 8 36 36 H 1.08999 * 109.47042 * 60.00540 * 14 12 10 37 37 H 1.08999 * 109.46790 * 180.02562 * 14 12 10 38 38 H 1.08997 * 109.47051 * 300.00606 * 14 12 10 39 39 H 1.09006 * 109.46711 * 65.00082 * 15 12 10 40 40 H 1.08997 * 109.47257 * 184.99804 * 15 12 10 41 41 H 0.96996 * 119.99973 * 0.02562 * 16 15 12 42 42 H 1.08998 * 109.47798 * 300.00325 * 19 17 16 43 43 H 1.09006 * 109.47114 * 60.00548 * 19 17 16 44 44 H 0.97000 * 119.99949 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6112 0.6443 -0.0042 5 1 4.3842 1.2302 -0.0072 6 6 3.6440 -0.6978 0.0025 7 6 2.3373 -1.1431 0.0053 8 6 1.8917 -2.5484 0.0130 9 8 0.9091 -2.8713 0.6527 10 7 2.5731 -3.4754 -0.6892 11 6 3.8124 -3.1073 -1.3784 12 6 2.0747 -4.8510 -0.7630 13 1 1.1489 -4.9331 -0.1934 14 6 3.1195 -5.8041 -0.1791 15 6 1.8084 -5.2191 -2.2240 16 7 0.8991 -4.2357 -2.8175 17 6 0.5219 -4.3579 -4.1057 18 8 0.9350 -5.2824 -4.7733 19 6 -0.4138 -3.3466 -4.7160 20 16 -0.7287 -3.7822 -6.4444 21 6 -1.8174 -2.4726 -6.8965 22 1 -2.0875 -1.7199 -6.1705 23 6 -2.3281 -2.4083 -8.1855 24 7 -3.1410 -1.4297 -8.5234 25 14 -1.8616 -3.7105 -9.4410 26 1 -2.8349 -4.8302 -9.3777 27 1 -1.8794 -3.1153 -10.8014 28 1 -0.4996 -4.2210 -9.1418 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3632 -0.8924 -0.5098 32 1 4.5298 -1.3156 0.0054 33 1 4.6478 -3.1680 -0.6810 34 1 3.9827 -3.7914 -2.2097 35 1 3.7286 -2.0887 -1.7573 36 1 3.3091 -5.5418 0.8617 37 1 2.7487 -6.8276 -0.2345 38 1 4.0450 -5.7219 -0.7490 39 1 2.7490 -5.2233 -2.7749 40 1 1.3547 -6.2090 -2.2724 41 1 0.5692 -3.4961 -2.2836 42 1 -1.3545 -3.3432 -4.1654 43 1 0.0394 -2.3565 -4.6672 44 1 -3.4982 -1.3849 -9.4241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678084819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:56 Heat of formation + Delta-G solvation = 3.996379 kcal Electronic energy + Delta-G solvation = -27356.696461 eV Core-core repulsion = 23437.286932 eV Total energy + Delta-G solvation = -3919.409530 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.85132 -40.11326 -38.98933 -36.77828 -34.27069 -33.29637 -32.44515 -32.39641 -30.21484 -29.47751 -28.24050 -27.40067 -26.03229 -25.51438 -23.79180 -21.70469 -20.47117 -20.27688 -19.66798 -18.17407 -17.86430 -17.27558 -16.59962 -16.37563 -15.91242 -15.61398 -15.12351 -14.97603 -14.93044 -14.78629 -14.00293 -13.91757 -13.62043 -13.50643 -13.17161 -13.08909 -13.00900 -12.90640 -12.77999 -12.76305 -12.54258 -12.26835 -12.18222 -11.87282 -11.30689 -11.25032 -11.17228 -10.99606 -10.58696 -10.13616 -9.84740 -9.83910 -9.53000 -9.15637 -9.01514 -8.99540 -8.94502 -8.48448 -6.89877 -6.26946 -3.98561 1.17848 1.87572 2.28291 2.61532 2.78967 2.95615 2.99444 3.32506 3.35992 3.51238 3.68231 4.10965 4.19790 4.34577 4.40858 4.60793 4.71922 4.77270 4.81143 4.85322 4.91968 5.05032 5.12042 5.12978 5.23692 5.26162 5.30531 5.39801 5.52424 5.58922 5.61387 5.68246 5.70780 5.78956 5.82719 6.04922 6.16564 6.20231 6.53546 6.70526 7.01128 7.21890 7.61657 7.92663 7.96204 8.44305 8.49989 9.19181 10.82364 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003024 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.167591 B = 9257.480328 C =10790.842317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.134 3.866 3 N -0.295 5.295 4 N -0.462 5.462 5 H 0.444 0.556 6 C 0.100 3.900 7 C -0.285 4.285 8 C 0.595 3.405 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.071 3.929 12 C 0.125 3.875 13 H 0.111 0.889 14 C -0.157 4.157 15 C 0.112 3.888 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.521 6.521 19 C -0.124 4.124 20 S -0.141 6.141 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.236 1.236 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.187 0.813 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.368 -0.939 21.672 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.118 5.118 4 N -0.166 5.166 5 H 0.289 0.711 6 C -0.053 4.053 7 C -0.300 4.300 8 C 0.383 3.617 9 O -0.409 6.409 10 N -0.341 5.341 11 C -0.072 4.072 12 C 0.022 3.978 13 H 0.129 0.871 14 C -0.215 4.215 15 C -0.014 4.014 16 N -0.386 5.386 17 C 0.317 3.683 18 O -0.396 6.396 19 C -0.274 4.274 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.113 4.113 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.204 0.796 33 H 0.074 0.926 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 18.442 -1.303 20.752 27.793 hybrid contribution 0.100 0.517 0.288 0.601 sum 18.543 -0.786 21.040 28.056 Atomic orbital electron populations 1.20290 0.85519 1.03964 1.03806 1.22479 0.97389 0.88531 0.94965 1.77224 0.86163 1.22299 1.26163 1.46132 1.07935 1.05428 1.57113 0.71139 1.23316 0.98947 0.85628 0.97377 1.20168 0.92408 0.94297 1.23158 1.17365 0.82440 0.83631 0.78222 1.90796 1.26956 1.81001 1.42182 1.47746 1.25472 1.09495 1.51419 1.21998 0.85507 1.02460 0.97266 1.21401 0.99644 0.80759 0.96036 0.87102 1.22048 0.98750 0.99309 1.01399 1.21674 0.94414 0.93189 0.92076 1.45878 1.50100 1.30319 1.12349 1.20264 0.80889 0.86098 0.81005 1.90694 1.55071 1.33081 1.60762 1.23269 1.01090 1.00734 1.02331 1.84741 1.62722 1.39813 1.04235 1.22328 1.31349 1.11891 1.01292 0.89378 1.24709 0.93580 0.95480 0.97504 1.69941 1.30498 1.30994 1.20280 0.86737 0.81923 0.82095 0.81106 1.19199 1.19973 1.15951 0.89698 0.90376 0.89755 0.79612 0.92603 0.90306 0.90632 0.91699 0.90808 0.91944 0.91259 0.90273 0.76682 0.88498 0.88638 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 9.91 36.01 0.36 -0.43 16 2 C 0.13 1.48 7.26 -82.02 -0.60 0.89 16 3 N -0.30 -3.17 12.63 33.90 0.43 -2.74 16 4 N -0.46 -3.12 7.29 30.85 0.22 -2.89 16 5 H 0.44 1.41 8.96 -182.73 -1.64 -0.23 16 6 C 0.10 0.62 9.74 -16.56 -0.16 0.46 16 7 C -0.29 -2.76 5.38 -105.07 -0.57 -3.32 16 8 C 0.59 6.26 7.08 -12.51 -0.09 6.18 16 9 O -0.53 -7.26 15.67 5.27 0.08 -7.18 16 10 N -0.61 -4.95 2.24 -175.19 -0.39 -5.34 16 11 C 0.07 0.39 8.05 59.85 0.48 0.88 16 12 C 0.12 1.04 2.79 -67.93 -0.19 0.85 16 13 H 0.11 1.10 6.91 -51.93 -0.36 0.74 16 14 C -0.16 -0.93 9.19 37.16 0.34 -0.59 16 15 C 0.11 1.16 4.93 -4.04 -0.02 1.14 16 16 N -0.73 -9.64 5.39 -60.29 -0.32 -9.96 16 17 C 0.53 9.49 7.85 -10.99 -0.09 9.41 16 18 O -0.52 -11.09 15.86 5.55 0.09 -11.00 16 19 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 20 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 21 C -0.52 -15.15 10.04 30.94 0.31 -14.84 16 22 H 0.09 2.68 8.03 -52.48 -0.42 2.26 16 23 C 0.10 2.82 5.50 -17.43 -0.10 2.73 16 24 N -0.88 -26.75 13.97 55.49 0.78 -25.98 16 25 Si 0.86 21.88 27.74 -169.99 -4.72 17.16 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.89 7.70 -51.93 -0.40 0.49 16 32 H 0.19 0.42 6.25 -52.49 -0.33 0.10 16 33 H 0.06 0.17 7.32 -51.93 -0.38 -0.21 16 34 H 0.08 0.46 6.53 -51.93 -0.34 0.12 16 35 H 0.08 0.44 5.89 -51.93 -0.31 0.13 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 39 H 0.07 0.72 6.86 -51.93 -0.36 0.36 16 40 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.40 4.90 7.87 -40.82 -0.32 4.58 16 42 H 0.10 1.82 8.14 -51.92 -0.42 1.40 16 43 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 44 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -38.06 379.48 -7.56 -45.62 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.36 Total: 1.08 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -0.09 Total: 1.13 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.71 Total: -46.92 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.17 Total: -18.18 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.72 Total: 17.16 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.06 -7.56 -45.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678084819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.615 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds