Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30459 * 125.98925 * 2 1 4 4 N 1.39935 * 108.89780 * 180.18151 * 3 2 1 5 5 H 0.96997 * 125.75157 * 179.84567 * 4 3 2 6 6 C 1.34259 * 108.49004 * 359.58381 * 4 3 2 7 7 C 1.38045 * 107.41799 * 0.24411 * 6 4 3 8 8 C 1.47429 * 126.41187 * 180.02562 * 7 6 4 9 9 O 1.21606 * 120.00567 * 142.73519 * 8 7 6 10 10 N 1.34783 * 119.99866 * 322.72422 * 8 7 6 11 11 C 1.46497 * 120.00086 * 4.56531 * 10 8 7 12 12 C 1.46502 * 119.99787 * 184.55642 * 10 8 7 13 13 H 1.09003 * 109.47202 * 0.02562 * 12 10 8 14 14 C 1.53004 * 109.47205 * 240.00315 * 12 10 8 15 15 C 1.53003 * 109.46855 * 120.00427 * 12 10 8 16 16 N 1.46498 * 109.47010 * 304.99914 * 15 12 10 17 17 C 1.34784 * 119.99897 * 179.97438 * 16 15 12 18 18 O 1.21284 * 119.99546 * 0.02562 * 17 16 15 19 19 C 1.50691 * 119.99891 * 179.97438 * 17 16 15 20 20 S 1.81004 * 109.46865 * 180.02562 * 19 17 16 21 21 C 1.76201 * 99.99996 * 180.02562 * 20 19 17 22 22 H 1.08006 * 120.00081 * 0.02562 * 21 20 19 23 23 C 1.38802 * 120.00230 * 180.02562 * 21 20 19 24 24 N 1.31629 * 120.00080 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 119.99809 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.46975 * 89.99739 * 25 23 21 27 27 H 1.48498 * 109.46833 * 209.99977 * 25 23 21 28 28 H 1.48498 * 109.46945 * 329.99649 * 25 23 21 29 29 H 1.08996 * 109.47228 * 270.26202 * 1 2 3 30 30 H 1.08998 * 109.47099 * 30.27091 * 1 2 3 31 31 H 1.09004 * 109.46566 * 150.25884 * 1 2 3 32 32 H 1.08002 * 126.29195 * 180.26047 * 6 4 3 33 33 H 1.08994 * 109.47384 * 84.78607 * 11 10 8 34 34 H 1.09000 * 109.46922 * 204.78830 * 11 10 8 35 35 H 1.09005 * 109.46904 * 324.78620 * 11 10 8 36 36 H 1.08999 * 109.47042 * 60.00540 * 14 12 10 37 37 H 1.08999 * 109.46790 * 180.02562 * 14 12 10 38 38 H 1.08997 * 109.47051 * 300.00606 * 14 12 10 39 39 H 1.09006 * 109.46711 * 65.00082 * 15 12 10 40 40 H 1.08997 * 109.47257 * 184.99804 * 15 12 10 41 41 H 0.96996 * 119.99973 * 0.02562 * 16 15 12 42 42 H 1.08998 * 109.47798 * 300.00325 * 19 17 16 43 43 H 1.09006 * 109.47114 * 60.00548 * 19 17 16 44 44 H 0.97000 * 119.99949 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0556 0.0000 4 7 3.6112 0.6443 -0.0042 5 1 4.3842 1.2302 -0.0072 6 6 3.6440 -0.6978 0.0025 7 6 2.3373 -1.1431 0.0053 8 6 1.8917 -2.5484 0.0130 9 8 0.9091 -2.8713 0.6527 10 7 2.5731 -3.4754 -0.6892 11 6 3.8124 -3.1073 -1.3784 12 6 2.0747 -4.8510 -0.7630 13 1 1.1489 -4.9331 -0.1934 14 6 3.1195 -5.8041 -0.1791 15 6 1.8084 -5.2191 -2.2240 16 7 0.8991 -4.2357 -2.8175 17 6 0.5219 -4.3579 -4.1057 18 8 0.9350 -5.2824 -4.7733 19 6 -0.4138 -3.3466 -4.7160 20 16 -0.7287 -3.7822 -6.4444 21 6 -1.8174 -2.4726 -6.8965 22 1 -2.0875 -1.7199 -6.1705 23 6 -2.3281 -2.4083 -8.1855 24 7 -3.1410 -1.4297 -8.5234 25 14 -1.8616 -3.7105 -9.4410 26 1 -2.8349 -4.8302 -9.3777 27 1 -1.8794 -3.1153 -10.8014 28 1 -0.4996 -4.2210 -9.1418 29 1 -0.3633 0.0047 1.0276 30 1 -0.3633 0.8875 -0.5180 31 1 -0.3632 -0.8924 -0.5098 32 1 4.5298 -1.3156 0.0054 33 1 4.6478 -3.1680 -0.6810 34 1 3.9827 -3.7914 -2.2097 35 1 3.7286 -2.0887 -1.7573 36 1 3.3091 -5.5418 0.8617 37 1 2.7487 -6.8276 -0.2345 38 1 4.0450 -5.7219 -0.7490 39 1 2.7490 -5.2233 -2.7749 40 1 1.3547 -6.2090 -2.2724 41 1 0.5692 -3.4961 -2.2836 42 1 -1.3545 -3.3432 -4.1654 43 1 0.0394 -2.3565 -4.6672 44 1 -3.4982 -1.3849 -9.4241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678084819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -24.986814 kcal Electronic energy + Delta-G solvation = -27357.953267 eV Core-core repulsion = 23437.286932 eV Total energy + Delta-G solvation = -3920.666335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.50373 -41.03503 -40.18669 -37.63603 -35.32903 -34.67647 -33.98697 -33.26659 -31.17226 -30.60041 -28.98031 -27.92881 -27.90075 -26.82201 -24.47130 -22.36536 -21.78897 -21.05925 -20.36175 -19.83432 -18.78487 -18.01599 -17.90091 -17.55996 -17.09365 -16.82153 -16.46019 -16.32815 -15.72783 -15.63811 -15.44946 -14.98010 -14.81086 -14.77495 -14.25764 -14.08883 -13.88025 -13.81085 -13.64240 -13.48633 -13.35167 -13.25832 -13.13832 -13.00924 -12.89095 -12.76407 -12.58057 -11.97360 -11.87595 -11.85198 -11.17388 -11.04775 -10.93094 -10.56212 -10.52416 -10.16024 -9.83951 -9.63064 -9.00341 -8.51680 -6.23050 0.61929 0.97465 1.10538 1.31996 1.46220 1.53508 1.55321 1.73599 1.98999 2.19275 2.25128 2.31294 2.70428 2.86473 3.44319 3.66291 3.73290 3.81744 3.99732 4.15763 4.20030 4.21753 4.25765 4.28708 4.43122 4.49781 4.61778 4.70061 4.71358 4.71985 4.82520 4.84702 4.93389 4.97416 5.08540 5.28132 5.38017 5.42112 5.59462 5.70226 6.10981 6.27987 6.33821 6.36968 6.56042 6.92952 7.12465 7.19940 8.61029 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011846 B = 0.003024 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2363.167591 B = 9257.480328 C =10790.842317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.113 3.887 3 N -0.329 5.329 4 N -0.449 5.449 5 H 0.460 0.540 6 C 0.132 3.868 7 C -0.316 4.316 8 C 0.594 3.406 9 O -0.575 6.575 10 N -0.602 5.602 11 C 0.062 3.938 12 C 0.132 3.868 13 H 0.092 0.908 14 C -0.149 4.149 15 C 0.110 3.890 16 N -0.711 5.711 17 C 0.538 3.462 18 O -0.556 6.556 19 C -0.114 4.114 20 S -0.165 6.165 21 C -0.533 4.533 22 H 0.058 0.942 23 C 0.046 3.954 24 N -0.918 5.918 25 Si 0.916 3.084 26 H -0.262 1.262 27 H -0.258 1.258 28 H -0.234 1.234 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.233 0.767 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.405 0.595 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.464 -2.029 22.310 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.054 4.054 3 N -0.153 5.153 4 N -0.155 5.155 5 H 0.308 0.692 6 C -0.022 4.022 7 C -0.331 4.331 8 C 0.384 3.616 9 O -0.455 6.455 10 N -0.335 5.335 11 C -0.080 4.080 12 C 0.028 3.972 13 H 0.110 0.890 14 C -0.207 4.207 15 C -0.014 4.014 16 N -0.364 5.364 17 C 0.324 3.676 18 O -0.435 6.435 19 C -0.265 4.265 20 S 0.062 5.938 21 C -0.680 4.680 22 H 0.077 0.923 23 C -0.160 4.160 24 N -0.556 5.556 25 Si 0.738 3.262 26 H -0.187 1.187 27 H -0.182 1.182 28 H -0.158 1.158 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.249 0.751 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.240 0.760 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 21.580 -2.359 21.418 30.496 hybrid contribution -0.785 0.924 0.245 1.237 sum 20.795 -1.436 21.663 30.063 Atomic orbital electron populations 1.20234 0.86105 1.03387 1.03741 1.22601 0.97643 0.89473 0.95707 1.77140 0.87908 1.22859 1.27375 1.46166 1.07294 1.06171 1.55860 0.69171 1.23898 0.99047 0.85395 0.93887 1.20216 0.93722 0.93531 1.25609 1.17517 0.81974 0.84196 0.77947 1.90771 1.28851 1.81653 1.44197 1.47785 1.25984 1.08963 1.50736 1.22271 0.85228 1.02438 0.98093 1.21315 1.00040 0.81615 0.94185 0.88961 1.22000 0.98430 0.98779 1.01484 1.21912 0.93922 0.92265 0.93279 1.45728 1.49353 1.30661 1.10639 1.19817 0.80529 0.85087 0.82193 1.90684 1.56558 1.34276 1.61932 1.23264 1.02503 1.02118 0.98591 1.84572 1.61686 1.38577 1.08985 1.22480 1.32133 1.12351 1.01069 0.92327 1.25591 0.93458 0.97482 0.99426 1.70024 1.31587 1.32705 1.21254 0.85846 0.81627 0.79563 0.79203 1.18658 1.18236 1.15814 0.89596 0.90356 0.90791 0.75087 0.88933 0.90230 0.90617 0.91446 0.90149 0.90285 0.90260 0.90382 0.75967 0.87603 0.87444 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 9.91 71.24 0.71 -0.94 16 2 C 0.11 2.49 7.26 43.51 0.32 2.81 16 3 N -0.33 -6.85 12.63 -46.67 -0.59 -7.44 16 4 N -0.45 -4.99 7.29 -56.32 -0.41 -5.40 16 5 H 0.46 1.61 8.96 -213.43 -1.91 -0.30 16 6 C 0.13 1.21 9.74 84.28 0.82 2.03 16 7 C -0.32 -5.67 5.38 -20.15 -0.11 -5.77 16 8 C 0.59 11.86 7.08 86.66 0.61 12.48 16 9 O -0.57 -15.82 15.67 -4.05 -0.06 -15.88 16 10 N -0.60 -8.39 2.24 -826.44 -1.85 -10.25 16 11 C 0.06 0.45 8.05 127.77 1.03 1.47 16 12 C 0.13 1.93 2.79 44.99 0.13 2.06 16 13 H 0.09 1.76 6.91 -2.39 -0.02 1.75 16 14 C -0.15 -1.31 9.19 71.98 0.66 -0.64 16 15 C 0.11 2.08 4.93 86.38 0.43 2.51 16 16 N -0.71 -17.78 5.39 -463.05 -2.50 -20.27 16 17 C 0.54 18.68 7.85 87.65 0.69 19.37 16 18 O -0.56 -23.11 15.86 -3.04 -0.05 -23.16 16 19 C -0.11 -4.46 6.16 71.23 0.44 -4.03 16 20 S -0.16 -8.40 18.55 -56.49 -1.05 -9.44 16 21 C -0.53 -31.54 10.04 67.95 0.68 -30.86 16 22 H 0.06 3.69 8.03 -2.91 -0.02 3.67 16 23 C 0.05 2.71 5.50 84.86 0.47 3.18 16 24 N -0.92 -56.52 13.97 21.65 0.30 -56.22 16 25 Si 0.92 45.10 27.74 68.60 1.90 47.00 16 26 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.23 -11.42 6.74 99.48 0.67 -10.75 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.69 7.70 -2.39 -0.02 1.67 16 32 H 0.23 -0.21 6.25 -2.91 -0.02 -0.23 16 33 H 0.09 0.04 7.32 -2.39 -0.02 0.02 16 34 H 0.08 0.62 6.53 -2.39 -0.02 0.61 16 35 H 0.08 0.59 5.89 -2.38 -0.01 0.57 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.08 0.46 7.67 -2.39 -0.02 0.44 16 39 H 0.08 1.41 6.86 -2.38 -0.02 1.40 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.41 9.55 7.87 -92.71 -0.73 8.82 16 42 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 43 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 44 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -84.81 379.48 0.94 -83.87 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -1.62 Total: 13.52 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: 6.87 Total: 3.66 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -5.05 Total: -99.57 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.11 Total: -39.04 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.44 kcal Total: -84.81 0.94 -83.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678084819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.883 kcal (2) G-P(sol) polarization free energy of solvation -84.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds