Wall clock time and date at job start Sat Apr 11 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30448 * 125.98594 * 2 1 4 4 N 1.39930 * 108.89683 * 179.77695 * 3 2 1 5 5 H 0.97003 * 125.75438 * 180.23671 * 4 3 2 6 6 C 1.34257 * 108.49135 * 0.37503 * 4 3 2 7 7 C 1.38038 * 107.41901 * 359.63912 * 6 4 3 8 8 C 1.47425 * 126.41917 * 180.22888 * 7 6 4 9 9 O 1.21609 * 120.00484 * 142.74406 * 8 7 6 10 10 N 1.34782 * 120.00082 * 322.74771 * 8 7 6 11 11 C 1.46496 * 119.99591 * 4.53636 * 10 8 7 12 12 C 1.46497 * 120.00027 * 184.54191 * 10 8 7 13 13 H 1.08999 * 109.47354 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.47133 * 119.99957 * 12 10 8 15 15 C 1.52999 * 109.46761 * 239.99558 * 12 10 8 16 16 N 1.46502 * 109.47174 * 55.00183 * 15 12 10 17 17 C 1.34781 * 119.99940 * 179.97438 * 16 15 12 18 18 O 1.21281 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99962 * 179.97438 * 17 16 15 20 20 S 1.80999 * 109.47201 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99861 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99910 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99725 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99810 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47022 * 60.00256 * 25 23 21 27 27 H 1.48504 * 109.46971 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47328 * 300.00321 * 25 23 21 29 29 H 1.08994 * 109.47096 * 269.99344 * 1 2 3 30 30 H 1.08991 * 109.47313 * 30.00160 * 1 2 3 31 31 H 1.09011 * 109.46848 * 149.99646 * 1 2 3 32 32 H 1.08001 * 126.28934 * 179.90325 * 6 4 3 33 33 H 1.09001 * 109.47076 * 84.78989 * 11 10 8 34 34 H 1.09000 * 109.47642 * 204.78588 * 11 10 8 35 35 H 1.09001 * 109.47499 * 324.79283 * 11 10 8 36 36 H 1.08997 * 109.47103 * 300.00160 * 14 12 10 37 37 H 1.08999 * 109.47306 * 59.99596 * 14 12 10 38 38 H 1.08998 * 109.47218 * 179.97438 * 14 12 10 39 39 H 1.09007 * 109.46915 * 175.00240 * 15 12 10 40 40 H 1.09002 * 109.47400 * 295.00240 * 15 12 10 41 41 H 0.96999 * 120.00158 * 0.02562 * 16 15 12 42 42 H 1.08996 * 109.46917 * 300.00693 * 19 17 16 43 43 H 1.09002 * 109.46848 * 60.00319 * 19 17 16 44 44 H 0.96992 * 119.99380 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 0.0052 5 1 4.3841 1.2302 0.0095 6 6 3.6439 -0.6978 0.0000 7 6 2.3373 -1.1432 -0.0001 8 6 1.8917 -2.5484 -0.0002 9 8 0.9088 -2.8747 0.6373 10 7 2.5736 -3.4717 -0.7067 11 6 3.8130 -3.0998 -1.3935 12 6 2.0753 -4.8469 -0.7880 13 1 1.1497 -4.9323 -0.2186 14 6 1.8098 -5.2076 -2.2510 15 6 3.1200 -5.8029 -0.2086 16 7 3.4623 -5.3851 1.1532 17 6 4.3683 -6.0844 1.8650 18 8 4.9005 -7.0593 1.3779 19 6 4.7208 -5.6543 3.2656 20 16 5.9566 -6.7853 3.9511 21 6 6.1765 -6.0682 5.5455 22 1 5.6158 -5.1882 5.8238 23 6 7.0697 -6.6351 6.4441 24 7 7.7527 -7.7080 6.1050 25 14 7.3024 -5.8754 8.1347 26 1 6.0081 -5.8821 8.8627 27 1 8.3041 -6.6627 8.8975 28 1 7.7803 -4.4770 7.9875 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5139 32 1 4.5298 -1.3155 0.0006 33 1 4.6482 -3.1639 -0.6960 34 1 3.9839 -3.7796 -2.2283 35 1 3.7293 -2.0793 -1.7672 36 1 1.0656 -4.5265 -2.6638 37 1 2.7355 -5.1223 -2.8200 38 1 1.4394 -6.2309 -2.3115 39 1 2.7145 -6.8145 -0.1872 40 1 4.0150 -5.7832 -0.8304 41 1 3.0363 -4.6056 1.5429 42 1 5.1267 -4.6430 3.2438 43 1 3.8258 -5.6732 3.8876 44 1 8.3771 -8.1039 6.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001678084823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:58 Heat of formation + Delta-G solvation = 3.228790 kcal Electronic energy + Delta-G solvation = -27142.525305 eV Core-core repulsion = 23223.082490 eV Total energy + Delta-G solvation = -3919.442815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.86389 -40.07448 -38.88874 -36.73324 -34.20051 -33.34316 -32.43215 -32.36543 -30.19937 -29.35485 -28.31152 -27.38668 -25.97560 -25.36831 -23.76815 -21.68386 -20.42571 -20.21551 -19.66624 -18.15370 -17.83847 -17.25234 -16.50843 -16.30672 -15.87725 -15.60487 -15.03885 -14.90098 -14.83963 -14.80082 -14.02703 -13.96745 -13.55075 -13.48904 -13.22575 -13.15361 -12.95132 -12.90376 -12.69768 -12.62569 -12.48524 -12.32738 -12.11738 -11.75029 -11.28301 -11.17257 -11.04088 -11.03592 -10.76572 -10.12657 -9.88250 -9.82308 -9.41325 -9.15655 -9.06100 -8.97125 -8.86643 -8.23939 -6.49707 -6.21453 -3.91888 1.18832 1.83712 2.28160 2.65083 2.94294 3.05862 3.11502 3.23682 3.27741 3.32355 3.74050 4.10248 4.20994 4.24779 4.42022 4.67441 4.73186 4.79419 4.84955 4.93714 5.11395 5.13599 5.13649 5.17183 5.28101 5.31762 5.39173 5.43495 5.49032 5.53010 5.60271 5.69388 5.74295 5.87699 5.90658 6.10053 6.16111 6.23265 6.63286 6.69715 7.03317 7.19076 7.59808 7.72350 7.95031 8.35542 8.62408 9.23878 10.85940 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002780 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.703317 B =10068.825174 C =11654.296022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.131 3.869 3 N -0.299 5.299 4 N -0.461 5.461 5 H 0.445 0.555 6 C 0.104 3.896 7 C -0.286 4.286 8 C 0.595 3.405 9 O -0.533 6.533 10 N -0.607 5.607 11 C 0.070 3.930 12 C 0.125 3.875 13 H 0.111 0.889 14 C -0.158 4.158 15 C 0.113 3.887 16 N -0.734 5.734 17 C 0.532 3.468 18 O -0.519 6.519 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.189 0.811 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.399 0.601 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.364 15.446 -19.529 27.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.037 4.037 3 N -0.122 5.122 4 N -0.165 5.165 5 H 0.290 0.710 6 C -0.048 4.048 7 C -0.301 4.301 8 C 0.383 3.617 9 O -0.410 6.410 10 N -0.341 5.341 11 C -0.073 4.073 12 C 0.022 3.978 13 H 0.129 0.871 14 C -0.216 4.216 15 C -0.013 4.013 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.394 6.394 19 C -0.304 4.304 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.744 3.256 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.206 0.794 33 H 0.078 0.922 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.105 0.895 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.840 14.759 -19.960 27.087 hybrid contribution 0.107 1.407 1.826 2.308 sum -10.733 16.166 -18.134 26.559 Atomic orbital electron populations 1.20245 0.85754 1.03324 1.03924 1.22425 0.97256 0.88648 0.95408 1.77167 0.86318 1.22370 1.26332 1.46127 1.07815 1.05518 1.57073 0.71021 1.23421 0.99155 0.85566 0.96693 1.20161 0.92350 0.94322 1.23230 1.17347 0.82483 0.83657 0.78179 1.90800 1.27072 1.80853 1.42272 1.47735 1.25348 1.09591 1.51394 1.22013 0.85934 1.01735 0.97635 1.21403 0.98580 0.79993 0.97851 0.87147 1.22065 1.02430 1.02581 0.94553 1.21655 0.98035 0.97951 0.83625 1.45937 1.44858 1.32784 1.15334 1.20288 0.78129 0.82669 0.87104 1.90697 1.51505 1.26117 1.71040 1.23525 1.05804 1.05811 0.95227 1.85348 1.47406 1.35909 1.14566 1.22838 1.29126 1.16389 1.00083 0.91011 1.24985 0.94797 0.94848 0.98897 1.70008 1.24640 1.19639 1.36054 0.86233 0.78166 0.79044 0.82113 1.19893 1.20800 1.19979 0.89625 0.90785 0.89981 0.79378 0.92204 0.90378 0.90854 0.91698 0.91869 0.90716 0.90429 0.91333 0.76730 0.89494 0.89247 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 9.91 36.01 0.36 -0.27 16 2 C 0.13 1.33 7.26 -82.02 -0.60 0.74 16 3 N -0.30 -3.00 12.63 33.90 0.43 -2.58 16 4 N -0.46 -3.19 7.29 30.85 0.22 -2.97 16 5 H 0.44 1.59 8.96 -182.72 -1.64 -0.05 16 6 C 0.10 0.72 9.73 -16.56 -0.16 0.56 16 7 C -0.29 -2.75 5.38 -105.07 -0.57 -3.32 16 8 C 0.59 6.38 7.08 -12.52 -0.09 6.29 16 9 O -0.53 -7.38 15.66 5.27 0.08 -7.30 16 10 N -0.61 -5.13 2.24 -175.21 -0.39 -5.52 16 11 C 0.07 0.41 8.15 59.84 0.49 0.90 16 12 C 0.13 1.09 2.79 -67.93 -0.19 0.90 16 13 H 0.11 1.14 6.91 -51.93 -0.36 0.78 16 14 C -0.16 -1.00 9.18 37.16 0.34 -0.66 16 15 C 0.11 1.24 4.97 -4.04 -0.02 1.22 16 16 N -0.73 -10.14 5.39 -60.29 -0.32 -10.47 16 17 C 0.53 9.97 7.85 -10.98 -0.09 9.88 16 18 O -0.52 -11.62 15.86 5.56 0.09 -11.53 16 19 C -0.15 -3.15 6.16 36.01 0.22 -2.93 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 21 C -0.54 -15.38 9.50 30.94 0.29 -15.09 16 22 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 23 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 25 Si 0.92 21.52 29.55 -169.99 -5.02 16.50 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.70 7.70 -51.92 -0.40 0.30 16 32 H 0.19 0.78 6.26 -52.49 -0.33 0.45 16 33 H 0.06 0.35 7.32 -51.93 -0.38 -0.03 16 34 H 0.08 0.38 6.44 -51.93 -0.33 0.05 16 35 H 0.07 0.35 5.89 -51.93 -0.31 0.04 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.34 6.66 -51.93 -0.35 0.00 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.07 0.75 7.84 -51.93 -0.41 0.34 16 41 H 0.40 5.17 7.87 -40.82 -0.32 4.85 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 44 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -38.00 382.16 -8.06 -46.06 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -7.32 Total: 1.10 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.10 Total: 0.25 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.67 Total: -47.02 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.17 Total: -18.83 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.00 -8.06 -46.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678084823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.293 kcal (2) G-P(sol) polarization free energy of solvation -38.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds