Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30448 * 125.98594 * 2 1 4 4 N 1.39930 * 108.89683 * 179.77695 * 3 2 1 5 5 H 0.97003 * 125.75438 * 180.23671 * 4 3 2 6 6 C 1.34257 * 108.49135 * 0.37503 * 4 3 2 7 7 C 1.38038 * 107.41901 * 359.63912 * 6 4 3 8 8 C 1.47425 * 126.41917 * 180.22888 * 7 6 4 9 9 O 1.21609 * 120.00484 * 142.74406 * 8 7 6 10 10 N 1.34782 * 120.00082 * 322.74771 * 8 7 6 11 11 C 1.46496 * 119.99591 * 4.53636 * 10 8 7 12 12 C 1.46497 * 120.00027 * 184.54191 * 10 8 7 13 13 H 1.08999 * 109.47354 * 359.97438 * 12 10 8 14 14 C 1.52999 * 109.47133 * 119.99957 * 12 10 8 15 15 C 1.52999 * 109.46761 * 239.99558 * 12 10 8 16 16 N 1.46502 * 109.47174 * 55.00183 * 15 12 10 17 17 C 1.34781 * 119.99940 * 179.97438 * 16 15 12 18 18 O 1.21281 * 119.99772 * 0.02562 * 17 16 15 19 19 C 1.50699 * 119.99962 * 179.97438 * 17 16 15 20 20 S 1.80999 * 109.47201 * 180.02562 * 19 17 16 21 21 C 1.76200 * 99.99861 * 180.02562 * 20 19 17 22 22 H 1.07999 * 119.99910 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99725 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99810 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47022 * 60.00256 * 25 23 21 27 27 H 1.48504 * 109.46971 * 180.02562 * 25 23 21 28 28 H 1.48505 * 109.47328 * 300.00321 * 25 23 21 29 29 H 1.08994 * 109.47096 * 269.99344 * 1 2 3 30 30 H 1.08991 * 109.47313 * 30.00160 * 1 2 3 31 31 H 1.09011 * 109.46848 * 149.99646 * 1 2 3 32 32 H 1.08001 * 126.28934 * 179.90325 * 6 4 3 33 33 H 1.09001 * 109.47076 * 84.78989 * 11 10 8 34 34 H 1.09000 * 109.47642 * 204.78588 * 11 10 8 35 35 H 1.09001 * 109.47499 * 324.79283 * 11 10 8 36 36 H 1.08997 * 109.47103 * 300.00160 * 14 12 10 37 37 H 1.08999 * 109.47306 * 59.99596 * 14 12 10 38 38 H 1.08998 * 109.47218 * 179.97438 * 14 12 10 39 39 H 1.09007 * 109.46915 * 175.00240 * 15 12 10 40 40 H 1.09002 * 109.47400 * 295.00240 * 15 12 10 41 41 H 0.96999 * 120.00158 * 0.02562 * 16 15 12 42 42 H 1.08996 * 109.46917 * 300.00693 * 19 17 16 43 43 H 1.09002 * 109.46848 * 60.00319 * 19 17 16 44 44 H 0.96992 * 119.99380 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6110 0.6443 0.0052 5 1 4.3841 1.2302 0.0095 6 6 3.6439 -0.6978 0.0000 7 6 2.3373 -1.1432 -0.0001 8 6 1.8917 -2.5484 -0.0002 9 8 0.9088 -2.8747 0.6373 10 7 2.5736 -3.4717 -0.7067 11 6 3.8130 -3.0998 -1.3935 12 6 2.0753 -4.8469 -0.7880 13 1 1.1497 -4.9323 -0.2186 14 6 1.8098 -5.2076 -2.2510 15 6 3.1200 -5.8029 -0.2086 16 7 3.4623 -5.3851 1.1532 17 6 4.3683 -6.0844 1.8650 18 8 4.9005 -7.0593 1.3779 19 6 4.7208 -5.6543 3.2656 20 16 5.9566 -6.7853 3.9511 21 6 6.1765 -6.0682 5.5455 22 1 5.6158 -5.1882 5.8238 23 6 7.0697 -6.6351 6.4441 24 7 7.7527 -7.7080 6.1050 25 14 7.3024 -5.8754 8.1347 26 1 6.0081 -5.8821 8.8627 27 1 8.3041 -6.6627 8.8975 28 1 7.7803 -4.4770 7.9875 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8901 -0.5139 32 1 4.5298 -1.3155 0.0006 33 1 4.6482 -3.1639 -0.6960 34 1 3.9839 -3.7796 -2.2283 35 1 3.7293 -2.0793 -1.7672 36 1 1.0656 -4.5265 -2.6638 37 1 2.7355 -5.1223 -2.8200 38 1 1.4394 -6.2309 -2.3115 39 1 2.7145 -6.8145 -0.1872 40 1 4.0150 -5.7832 -0.8304 41 1 3.0363 -4.6056 1.5429 42 1 5.1267 -4.6430 3.2438 43 1 3.8258 -5.6732 3.8876 44 1 8.3771 -8.1039 6.7328 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001678084823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -25.141947 kcal Electronic energy + Delta-G solvation = -27143.755552 eV Core-core repulsion = 23223.082490 eV Total energy + Delta-G solvation = -3920.673062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.51507 -41.01183 -40.15698 -37.62593 -35.30825 -34.59145 -33.98685 -33.25966 -31.12403 -30.57781 -28.96003 -27.95255 -27.73891 -26.75496 -24.48460 -22.35281 -21.73197 -21.05885 -20.36748 -19.78114 -18.79114 -18.00323 -17.83309 -17.50444 -16.88541 -16.79245 -16.49798 -16.31771 -15.81792 -15.63531 -15.44152 -14.84634 -14.73861 -14.51968 -14.27147 -14.10398 -13.91021 -13.79936 -13.61526 -13.45285 -13.18217 -13.17573 -13.09746 -12.90534 -12.87764 -12.76586 -12.59891 -11.94898 -11.88301 -11.74683 -11.13917 -10.98400 -10.94230 -10.53177 -10.30003 -10.12769 -9.85128 -9.64742 -8.66957 -8.35452 -6.13254 0.58781 1.10323 1.25770 1.42764 1.45406 1.55524 1.59984 1.72687 1.99522 2.20652 2.26237 2.33099 2.98478 3.30813 3.44913 3.64800 3.73254 3.91785 4.04838 4.17574 4.20591 4.23665 4.26981 4.29372 4.48252 4.49475 4.62177 4.66977 4.70169 4.73756 4.82501 4.85921 4.92932 4.94589 5.06329 5.29039 5.40309 5.40806 5.43955 5.59060 6.18780 6.24245 6.34229 6.42281 6.54745 7.05858 7.18976 7.20058 8.73463 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011646 B = 0.002780 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.703317 B =10068.825174 C =11654.296022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.115 3.885 3 N -0.324 5.324 4 N -0.449 5.449 5 H 0.459 0.541 6 C 0.126 3.874 7 C -0.312 4.312 8 C 0.594 3.406 9 O -0.574 6.574 10 N -0.602 5.602 11 C 0.062 3.938 12 C 0.133 3.867 13 H 0.094 0.906 14 C -0.151 4.151 15 C 0.112 3.888 16 N -0.711 5.711 17 C 0.537 3.463 18 O -0.560 6.560 19 C -0.132 4.132 20 S -0.140 6.140 21 C -0.550 4.550 22 H 0.079 0.921 23 C 0.016 3.984 24 N -0.910 5.910 25 Si 0.996 3.004 26 H -0.265 1.265 27 H -0.277 1.277 28 H -0.261 1.261 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.220 0.780 33 H 0.065 0.935 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.406 0.594 42 H 0.107 0.893 43 H 0.099 0.901 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.118 17.201 -20.039 28.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.052 4.052 3 N -0.148 5.148 4 N -0.155 5.155 5 H 0.308 0.692 6 C -0.028 4.028 7 C -0.327 4.327 8 C 0.383 3.617 9 O -0.454 6.454 10 N -0.334 5.334 11 C -0.080 4.080 12 C 0.029 3.971 13 H 0.112 0.888 14 C -0.209 4.209 15 C -0.012 4.012 16 N -0.364 5.364 17 C 0.323 3.677 18 O -0.438 6.438 19 C -0.283 4.283 20 S 0.087 5.913 21 C -0.698 4.698 22 H 0.098 0.902 23 C -0.189 4.189 24 N -0.546 5.546 25 Si 0.818 3.182 26 H -0.189 1.189 27 H -0.202 1.202 28 H -0.186 1.186 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.237 0.763 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.241 0.759 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.600 16.566 -20.518 28.421 hybrid contribution -0.002 0.907 1.870 2.079 sum -10.602 17.473 -18.647 27.667 Atomic orbital electron populations 1.20231 0.85440 1.03665 1.03702 1.22672 0.97915 0.89052 0.95595 1.77109 0.87610 1.22813 1.27287 1.46169 1.07478 1.05937 1.55916 0.69243 1.23812 0.99134 0.85590 0.94286 1.20191 0.93480 0.93665 1.25366 1.17534 0.82058 0.84306 0.77766 1.90776 1.28911 1.81527 1.44175 1.47779 1.25884 1.09004 1.50757 1.22246 0.84636 1.03048 0.98037 1.21301 0.96887 0.79748 0.99127 0.88839 1.22023 1.03273 1.03048 0.92559 1.21870 0.99049 0.98448 0.81872 1.45739 1.42789 1.31855 1.16032 1.19930 0.78767 0.82487 0.86560 1.90689 1.53448 1.27984 1.71659 1.23375 1.03877 1.04723 0.96340 1.85466 1.50679 1.39479 1.15683 1.23173 1.29499 1.16681 1.00448 0.90245 1.26088 0.94173 0.95184 1.03454 1.70164 1.25418 1.21256 1.37750 0.85040 0.78444 0.78471 0.76271 1.18934 1.20202 1.18590 0.90109 0.89546 0.90478 0.76326 0.91691 0.88915 0.89455 0.91478 0.90410 0.89969 0.90810 0.90435 0.75880 0.87467 0.88223 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.22 9.91 71.24 0.71 -0.52 16 2 C 0.12 2.26 7.26 43.52 0.32 2.58 16 3 N -0.32 -6.13 12.63 -46.67 -0.59 -6.72 16 4 N -0.45 -5.20 7.29 -56.32 -0.41 -5.61 16 5 H 0.46 2.12 8.96 -213.43 -1.91 0.21 16 6 C 0.13 1.41 9.73 84.27 0.82 2.23 16 7 C -0.31 -5.57 5.38 -20.15 -0.11 -5.68 16 8 C 0.59 12.09 7.08 86.66 0.61 12.70 16 9 O -0.57 -15.87 15.66 -4.06 -0.06 -15.94 16 10 N -0.60 -8.98 2.24 -826.48 -1.85 -10.84 16 11 C 0.06 0.54 8.15 127.77 1.04 1.58 16 12 C 0.13 2.10 2.79 44.99 0.13 2.23 16 13 H 0.09 1.87 6.91 -2.39 -0.02 1.85 16 14 C -0.15 -1.56 9.18 71.98 0.66 -0.90 16 15 C 0.11 2.28 4.97 86.38 0.43 2.71 16 16 N -0.71 -18.57 5.39 -463.04 -2.49 -21.06 16 17 C 0.54 19.69 7.85 87.66 0.69 20.38 16 18 O -0.56 -25.09 15.86 -3.03 -0.05 -25.14 16 19 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 20 S -0.14 -7.77 20.57 -56.49 -1.16 -8.93 16 21 C -0.55 -31.60 9.50 67.96 0.65 -30.95 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 23 C 0.02 0.91 5.49 84.86 0.47 1.38 16 24 N -0.91 -55.67 13.22 21.65 0.29 -55.38 16 25 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 26 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 27 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 28 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.35 7.70 -2.38 -0.02 1.33 16 32 H 0.22 0.95 6.26 -2.91 -0.02 0.94 16 33 H 0.06 0.53 7.32 -2.39 -0.02 0.51 16 34 H 0.09 0.57 6.44 -2.39 -0.02 0.55 16 35 H 0.09 0.54 5.89 -2.39 -0.01 0.53 16 36 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.08 0.60 6.66 -2.39 -0.02 0.58 16 38 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.08 1.51 7.84 -2.39 -0.02 1.49 16 41 H 0.41 9.83 7.87 -92.71 -0.73 9.10 16 42 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 43 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 44 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -84.36 382.16 0.95 -83.41 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -1.59 Total: 17.68 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 6.84 Total: 2.84 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -5.06 Total: -99.62 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -0.11 Total: -41.08 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -1.16 Total: -8.93 kcal Total: -84.36 0.95 -83.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001678084823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.271 kcal (2) G-P(sol) polarization free energy of solvation -84.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds