Wall clock time and date at job start Sat Apr 11 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47263 * 179.97438 * 12 11 9 14 14 N 1.46496 * 109.47107 * 180.02562 * 13 12 11 15 15 C 1.34774 * 120.00140 * 180.02562 * 14 13 12 16 16 O 1.21288 * 119.99604 * 0.02562 * 15 14 13 17 17 C 1.50693 * 120.00062 * 179.97438 * 15 14 13 18 18 S 1.81006 * 109.47049 * 180.02562 * 17 15 14 19 19 C 1.76204 * 99.99805 * 180.02562 * 18 17 15 20 20 H 1.07993 * 120.00022 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99563 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99654 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47226 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.46882 * 119.99992 * 23 21 19 26 26 H 1.48498 * 109.46892 * 240.00152 * 23 21 19 27 27 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 28 28 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 29 29 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 30 30 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 31 31 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 32 32 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 33 33 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 34 34 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 35 35 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 36 36 H 0.96998 * 119.99882 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.47114 * 300.00241 * 12 11 9 38 38 H 1.08995 * 109.46665 * 60.00014 * 12 11 9 39 39 H 1.08996 * 109.46603 * 300.00220 * 13 12 11 40 40 H 1.09005 * 109.46752 * 60.00185 * 13 12 11 41 41 H 0.96998 * 119.99978 * 0.02562 * 14 13 12 42 42 H 1.09003 * 109.47064 * 300.00025 * 17 15 14 43 43 H 1.09000 * 109.47370 * 59.99798 * 17 15 14 44 44 H 0.97006 * 119.99706 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 0.4152 -6.1395 -3.0378 14 7 0.1490 -6.5661 -4.4137 15 6 -0.2817 -7.8194 -4.6593 16 8 -0.4493 -8.5938 -3.7410 17 6 -0.5561 -8.2581 -6.0746 18 16 -1.1171 -9.9790 -6.0748 19 6 -1.3562 -10.2227 -7.8034 20 1 -1.1579 -9.4171 -8.4948 21 6 -1.7993 -11.4500 -8.2765 22 7 -2.0414 -12.4317 -7.4337 23 14 -2.0535 -11.7081 -10.1090 24 1 -1.7141 -10.4589 -10.8367 25 1 -1.1754 -12.8090 -10.5803 26 1 -3.4725 -12.0618 -10.3669 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.0836 1.7155 1.0262 31 1 5.6089 0.9983 -0.5158 32 1 4.5560 2.4334 -0.5147 33 1 4.4892 -1.3485 -0.0129 34 1 2.6329 -3.2001 0.4332 35 1 0.9471 -2.6503 0.5891 36 1 1.0217 -4.8774 -0.9272 37 1 0.1148 -4.0504 -3.4709 38 1 1.8007 -4.5993 -3.6276 39 1 1.1891 -6.7731 -2.6045 40 1 -0.4971 -6.2250 -2.4475 41 1 0.2827 -5.9467 -5.1481 42 1 -1.3297 -7.6241 -6.5079 43 1 0.3563 -8.1728 -6.6648 44 1 -2.3515 -13.2894 -7.7643 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686445864.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:03 Heat of formation + Delta-G solvation = -2.422889 kcal Electronic energy + Delta-G solvation = -25086.617724 eV Core-core repulsion = 21166.929834 eV Total energy + Delta-G solvation = -3919.687890 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65811 -39.84665 -39.13572 -35.96154 -34.53487 -33.93664 -32.44200 -32.40450 -30.42129 -30.00577 -28.59273 -27.37127 -25.50733 -25.15242 -22.91853 -21.49096 -20.89765 -20.31501 -19.78423 -17.96451 -17.40377 -17.08342 -16.50922 -16.19974 -15.92601 -15.65347 -15.53912 -15.32885 -14.81368 -14.64309 -14.25054 -14.04717 -13.91739 -13.78411 -13.60402 -13.33087 -13.17980 -12.86861 -12.57923 -12.50269 -12.44732 -12.39746 -12.07229 -11.99895 -11.64533 -11.07719 -11.03293 -10.82252 -10.77033 -10.21051 -9.82233 -9.51773 -9.49301 -9.40844 -9.09521 -8.99703 -8.69300 -8.25592 -6.51835 -6.23195 -3.93827 1.54325 2.15105 2.29557 2.40318 2.74490 3.02952 3.16754 3.21104 3.29180 3.37315 3.78479 4.07364 4.19107 4.38806 4.40351 4.57626 4.63028 4.69831 4.78206 4.84755 4.88333 4.95344 4.99803 5.11762 5.12366 5.17550 5.22273 5.36445 5.56283 5.57772 5.63800 5.68853 5.69335 5.76321 5.86969 6.06073 6.12153 6.34858 6.49345 6.65471 7.17408 7.40900 7.58622 7.60896 7.96692 8.34334 8.53002 9.22544 10.84313 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.034088 B = 0.001388 C = 0.001375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.199688 B =20166.552186 C =20354.454937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.092 3.908 3 N -0.300 5.300 4 N -0.377 5.377 5 C 0.103 3.897 6 C 0.069 3.931 7 C -0.221 4.221 8 C -0.059 4.059 9 C 0.513 3.487 10 O -0.529 6.529 11 N -0.731 5.731 12 C 0.110 3.890 13 C 0.111 3.889 14 N -0.737 5.737 15 C 0.534 3.466 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.074 0.926 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.403 0.597 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.984 25.811 17.978 33.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.074 4.074 3 N -0.122 5.122 4 N -0.158 5.158 5 C -0.038 4.038 6 C -0.077 4.077 7 C -0.233 4.233 8 C -0.100 4.100 9 C 0.299 3.701 10 O -0.404 6.404 11 N -0.385 5.385 12 C -0.015 4.015 13 C -0.014 4.014 14 N -0.393 5.393 15 C 0.320 3.680 16 O -0.390 6.390 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.189 0.811 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.238 0.762 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.235 0.765 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.966 26.284 18.871 34.499 hybrid contribution 0.240 -0.206 -2.315 2.337 sum 12.206 26.079 16.556 33.214 Atomic orbital electron populations 1.20190 0.86792 1.03065 1.03259 1.22159 0.96802 0.90143 0.98334 1.77307 0.86334 1.22687 1.25921 1.48279 1.05609 1.04668 1.57264 1.21843 0.83603 0.95093 1.03256 1.22245 0.99020 0.85043 1.01407 1.19245 0.91984 0.94559 1.17474 1.19865 1.03458 0.92860 0.93795 1.20778 0.76487 0.81098 0.91786 1.90732 1.50749 1.52589 1.46376 1.45848 1.69406 1.14114 1.09082 1.21423 1.01685 0.94469 0.83892 1.21325 1.01571 0.93363 0.85114 1.45815 1.70871 1.14435 1.08139 1.20321 0.75639 0.80679 0.91325 1.90708 1.49979 1.52240 1.46081 1.23531 1.04955 1.07008 0.94924 1.85390 1.85698 1.01716 1.10586 1.22914 1.52241 1.01217 0.91997 0.90824 1.24992 0.94667 0.94901 0.98995 1.70028 1.42648 1.03214 1.34401 0.86112 0.78034 0.78336 0.82992 1.19602 1.20567 1.20552 0.90280 0.90579 0.90901 0.90776 0.89478 0.89308 0.81090 0.88220 0.88006 0.76214 0.90780 0.90867 0.90987 0.90930 0.76498 0.89061 0.89079 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.26 36.00 0.37 -0.19 16 2 C 0.09 0.93 7.22 -82.40 -0.59 0.34 16 3 N -0.30 -3.41 12.57 33.67 0.42 -2.99 16 4 N -0.38 -3.32 4.01 -68.16 -0.27 -3.59 16 5 C 0.10 0.45 11.47 59.85 0.69 1.14 16 6 C 0.07 0.55 11.40 -17.22 -0.20 0.35 16 7 C -0.22 -1.92 4.59 -105.05 -0.48 -2.40 16 8 C -0.06 -0.35 5.95 -29.04 -0.17 -0.52 16 9 C 0.51 4.51 7.82 -10.99 -0.09 4.42 16 10 O -0.53 -7.08 16.03 5.55 0.09 -6.99 16 11 N -0.73 -5.09 5.56 -60.29 -0.33 -5.43 16 12 C 0.11 0.92 5.79 -4.04 -0.02 0.90 16 13 C 0.11 1.11 5.79 -4.04 -0.02 1.09 16 14 N -0.74 -9.12 5.56 -60.30 -0.33 -9.46 16 15 C 0.53 9.55 7.85 -10.99 -0.09 9.47 16 16 O -0.52 -11.27 15.86 5.55 0.09 -11.18 16 17 C -0.15 -3.02 6.16 36.00 0.22 -2.79 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.97 13.22 55.49 0.73 -25.24 16 23 Si 0.92 21.29 29.55 -169.99 -5.02 16.26 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.41 7.37 -51.93 -0.38 0.03 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.17 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.40 7.41 -51.93 -0.39 0.01 16 36 H 0.40 1.74 8.47 -40.82 -0.35 1.40 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 3.88 8.47 -40.82 -0.35 3.54 16 42 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 43 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 397.16 15.07 5.99 5.99 Total: -1.00 -40.34 397.16 -7.55 -47.89 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.50 Total: -0.37 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: -0.19 Total: -1.06 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.21 Total: -46.70 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.17 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -40.34 -7.55 -47.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686445864.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.465 kcal (2) G-P(sol) polarization free energy of solvation -40.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds