Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.10745 * 2 1 4 4 C 1.30854 * 109.68536 * 180.28667 * 3 2 1 5 5 N 1.34495 * 109.16585 * 359.75904 * 4 3 2 6 6 C 1.46496 * 126.47428 * 180.02562 * 5 4 3 7 7 C 1.36663 * 126.10557 * 179.88831 * 2 1 3 8 8 C 1.46754 * 126.85018 * 359.97438 * 7 2 1 9 9 O 1.21687 * 120.00275 * 279.64732 * 8 7 2 10 10 N 1.34782 * 120.00430 * 99.63799 * 8 7 2 11 11 C 1.46496 * 120.00126 * 174.80798 * 10 8 7 12 12 C 1.53001 * 109.46945 * 180.27934 * 11 10 8 13 13 C 1.53003 * 109.46901 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46602 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99264 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00398 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99729 * 179.97438 * 15 14 13 18 18 S 1.80994 * 109.47094 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99966 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00060 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00257 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99736 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47423 * 59.99866 * 23 21 19 25 25 H 1.48505 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47151 * 299.99417 * 23 21 19 27 27 H 1.09000 * 109.46830 * 270.11490 * 1 2 3 28 28 H 1.08996 * 109.47150 * 30.11723 * 1 2 3 29 29 H 1.09003 * 109.46973 * 150.11886 * 1 2 3 30 30 H 1.08005 * 125.41709 * 179.79238 * 4 3 2 31 31 H 1.08998 * 109.46800 * 274.96849 * 6 5 4 32 32 H 1.08996 * 109.47109 * 34.96570 * 6 5 4 33 33 H 1.08995 * 109.47150 * 154.97212 * 6 5 4 34 34 H 0.97001 * 119.99675 * 355.08790 * 10 8 7 35 35 H 1.09009 * 109.47148 * 300.27745 * 11 10 8 36 36 H 1.08998 * 109.47454 * 60.27724 * 11 10 8 37 37 H 1.08995 * 109.46951 * 299.99784 * 12 11 10 38 38 H 1.09000 * 109.46819 * 60.00296 * 12 11 10 39 39 H 1.08995 * 109.47222 * 299.99716 * 13 12 11 40 40 H 1.08992 * 109.47217 * 60.00269 * 13 12 11 41 41 H 0.96994 * 120.00543 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47324 * 300.00697 * 17 15 14 43 43 H 1.09006 * 109.46778 * 60.00365 * 17 15 14 44 44 H 0.96992 * 120.00453 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 -0.0062 5 7 3.6122 -0.6362 -0.0050 6 6 4.8306 -1.4497 -0.0100 7 6 2.3123 -1.1041 0.0022 8 6 1.8822 -2.5072 0.0054 9 8 1.5354 -3.0349 1.0456 10 7 1.8710 -3.2114 -1.1437 11 6 1.5516 -4.6410 -1.1237 12 6 1.6151 -5.1977 -2.5475 13 6 1.2820 -6.6909 -2.5265 14 7 1.3422 -7.2238 -3.8898 15 6 1.0840 -8.5271 -4.1158 16 8 0.8014 -9.2587 -3.1907 17 6 1.1453 -9.0753 -5.5183 18 16 0.7515 -10.8417 -5.4935 19 6 0.8941 -11.2111 -7.2105 20 1 1.1573 -10.4319 -7.9104 21 6 0.6670 -12.5033 -7.6635 22 7 0.3456 -13.4529 -6.8105 23 14 0.8188 -12.8950 -9.4837 24 1 2.1983 -12.5913 -9.9420 25 1 0.5295 -14.3345 -9.7060 26 1 -0.1501 -12.0708 -10.2499 27 1 -0.3633 0.0021 1.0277 28 1 -0.3633 0.8889 -0.5156 29 1 -0.3633 -0.8911 -0.5120 30 1 4.3970 1.3745 -0.0108 31 1 5.1772 -1.5785 -1.0353 32 1 5.6031 -0.9504 0.5747 33 1 4.6178 -2.4254 0.4268 34 1 2.0785 -2.7725 -1.9835 35 1 2.2721 -5.1656 -0.4960 36 1 0.5483 -4.7836 -0.7222 37 1 0.8946 -4.6732 -3.1751 38 1 2.6184 -5.0552 -2.9489 39 1 2.0028 -7.2151 -1.8990 40 1 0.2789 -6.8338 -2.1249 41 1 1.5686 -6.6388 -4.6297 42 1 0.4238 -8.5512 -6.1451 43 1 2.1481 -8.9318 -5.9209 44 1 0.1873 -14.3559 -7.1270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001686894412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -20.883993 kcal Electronic energy + Delta-G solvation = -25225.565106 eV Core-core repulsion = 21305.076682 eV Total energy + Delta-G solvation = -3920.488423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.71563 -39.86591 -39.21313 -36.44328 -35.02412 -34.58521 -32.45539 -32.21162 -31.38045 -29.38218 -28.74459 -26.73595 -25.72265 -25.34214 -23.10927 -22.20355 -21.21405 -20.45222 -20.24887 -18.25988 -17.82359 -17.03553 -16.59895 -16.44154 -16.24960 -16.15315 -15.59692 -15.51305 -14.92201 -14.82772 -14.43790 -14.20904 -14.06484 -13.90203 -13.56655 -13.23766 -13.19361 -13.06673 -12.82069 -12.73354 -12.59853 -12.40165 -12.03227 -12.03208 -11.41451 -11.07359 -11.06015 -10.97264 -10.79387 -10.36952 -10.14449 -9.85469 -9.66028 -9.47828 -9.09214 -8.97705 -8.91019 -8.27280 -6.53160 -6.23916 -3.95066 1.15197 1.66292 2.28661 2.48644 2.69994 3.02040 3.03815 3.21410 3.25718 3.28907 3.65577 3.98364 4.05113 4.12432 4.18010 4.44235 4.46228 4.49041 4.56805 4.61834 4.72309 4.77953 5.09450 5.11116 5.13492 5.19820 5.30110 5.36243 5.41526 5.51889 5.57102 5.61586 5.68837 5.78546 5.84030 5.84931 6.08343 6.09091 6.51134 6.52004 6.85029 7.46018 7.56507 7.57479 7.61935 8.32364 8.54513 9.21144 10.83447 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001427 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.435315 B =19612.480174 C =19794.370027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.065 3.935 3 N -0.492 5.492 4 C 0.204 3.796 5 N -0.440 5.440 6 C 0.067 3.933 7 C -0.086 4.086 8 C 0.598 3.402 9 O -0.516 6.516 10 N -0.719 5.719 11 C 0.120 3.880 12 C -0.142 4.142 13 C 0.124 3.876 14 N -0.740 5.740 15 C 0.531 3.469 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.213 0.787 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.744 29.765 10.735 32.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.069 4.069 3 N -0.211 5.211 4 C -0.078 4.078 5 N -0.123 5.123 6 C -0.075 4.075 7 C -0.202 4.202 8 C 0.381 3.619 9 O -0.390 6.390 10 N -0.371 5.371 11 C -0.003 4.003 12 C -0.181 4.181 13 C 0.000 4.000 14 N -0.395 5.395 15 C 0.317 3.683 16 O -0.389 6.389 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.199 1.199 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.229 0.771 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.238 0.762 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.854 28.603 13.103 32.427 hybrid contribution 1.202 0.335 -3.018 3.266 sum 9.056 28.938 10.085 31.955 Atomic orbital electron populations 1.20158 0.86901 1.03026 1.03143 1.20905 0.96513 0.86735 1.02714 1.70048 1.00403 1.30061 1.20558 1.25053 0.97268 0.81578 1.03873 1.45321 1.05822 1.07814 1.53363 1.22193 0.84639 0.96440 1.04232 1.20656 0.84939 0.94862 1.19737 1.16863 0.78026 0.83217 0.83804 1.90892 1.46552 1.69745 1.31789 1.46013 1.71072 1.10506 1.09532 1.21340 1.02609 0.79302 0.97090 1.21975 1.03306 0.96224 0.96564 1.21093 1.02605 0.91591 0.84752 1.45961 1.74010 1.10481 1.09080 1.20327 0.75705 0.81077 0.91147 1.90713 1.45695 1.57419 1.45117 1.23533 1.05115 1.06504 0.95274 1.85418 1.90799 0.95749 1.11353 1.22826 1.55256 0.97877 0.92609 0.90968 1.24990 0.94491 0.95149 0.98900 1.70001 1.43819 1.01956 1.34456 0.86223 0.78748 0.77506 0.83009 1.19957 1.20783 1.19933 0.90497 0.90361 0.91258 0.77088 0.89698 0.88685 0.89455 0.76187 0.90666 0.90313 0.90273 0.90499 0.91228 0.91123 0.76822 0.89187 0.89223 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.24 36.01 0.37 -0.20 16 2 C 0.06 0.61 7.15 -82.51 -0.59 0.02 16 3 N -0.49 -4.69 11.20 -10.64 -0.12 -4.81 16 4 C 0.20 1.29 12.52 -90.58 -1.13 0.15 16 5 N -0.44 -2.71 3.17 -121.98 -0.39 -3.10 16 6 C 0.07 0.17 11.07 59.84 0.66 0.84 16 7 C -0.09 -0.74 6.66 -82.14 -0.55 -1.29 16 8 C 0.60 5.52 6.73 -12.82 -0.09 5.43 16 9 O -0.52 -6.83 17.12 5.20 0.09 -6.74 16 10 N -0.72 -4.46 5.55 -61.59 -0.34 -4.80 16 11 C 0.12 0.79 5.68 -4.04 -0.02 0.77 16 12 C -0.14 -0.79 5.44 -26.73 -0.15 -0.94 16 13 C 0.12 1.21 5.67 -4.04 -0.02 1.19 16 14 N -0.74 -8.76 5.56 -60.29 -0.33 -9.10 16 15 C 0.53 9.47 7.85 -10.98 -0.09 9.38 16 16 O -0.52 -11.44 15.86 5.56 0.09 -11.35 16 17 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 20 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 23 Si 0.92 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 30 H 0.21 0.43 8.06 -52.48 -0.42 0.01 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.09 0.32 7.79 -51.93 -0.40 -0.09 16 34 H 0.40 1.64 8.46 -40.82 -0.35 1.29 16 35 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.40 3.42 8.47 -40.82 -0.35 3.08 16 42 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 43 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 44 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 397.82 15.07 6.00 6.00 Total: -1.00 -39.53 397.82 -9.24 -48.78 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.55 Total: -1.72 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.18 Total: -0.24 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: -0.45 Total: -47.01 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.18 Total: -18.09 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -39.53 -9.24 -48.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.892 kcal (2) G-P(sol) polarization free energy of solvation -39.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds