Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33320 * 126.10745 * 2 1 4 4 C 1.30854 * 109.68536 * 180.28667 * 3 2 1 5 5 N 1.34495 * 109.16585 * 359.75904 * 4 3 2 6 6 C 1.46496 * 126.47428 * 180.02562 * 5 4 3 7 7 C 1.36663 * 126.10557 * 179.88831 * 2 1 3 8 8 C 1.46754 * 126.85018 * 359.97438 * 7 2 1 9 9 O 1.21687 * 120.00275 * 279.64732 * 8 7 2 10 10 N 1.34782 * 120.00430 * 99.63799 * 8 7 2 11 11 C 1.46496 * 120.00126 * 174.80798 * 10 8 7 12 12 C 1.53001 * 109.46945 * 180.27934 * 11 10 8 13 13 C 1.53003 * 109.46901 * 179.97438 * 12 11 10 14 14 N 1.46503 * 109.46602 * 179.97438 * 13 12 11 15 15 C 1.34780 * 119.99264 * 179.97438 * 14 13 12 16 16 O 1.21277 * 120.00398 * 0.02562 * 15 14 13 17 17 C 1.50707 * 119.99729 * 179.97438 * 15 14 13 18 18 S 1.80994 * 109.47094 * 180.02562 * 17 15 14 19 19 C 1.76205 * 99.99966 * 180.02562 * 18 17 15 20 20 H 1.07996 * 119.99995 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00060 * 180.02562 * 19 18 17 22 22 N 1.31627 * 120.00257 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99736 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47423 * 59.99866 * 23 21 19 25 25 H 1.48505 * 109.47034 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47151 * 299.99417 * 23 21 19 27 27 H 1.09000 * 109.46830 * 270.11490 * 1 2 3 28 28 H 1.08996 * 109.47150 * 30.11723 * 1 2 3 29 29 H 1.09003 * 109.46973 * 150.11886 * 1 2 3 30 30 H 1.08005 * 125.41709 * 179.79238 * 4 3 2 31 31 H 1.08998 * 109.46800 * 274.96849 * 6 5 4 32 32 H 1.08996 * 109.47109 * 34.96570 * 6 5 4 33 33 H 1.08995 * 109.47150 * 154.97212 * 6 5 4 34 34 H 0.97001 * 119.99675 * 355.08790 * 10 8 7 35 35 H 1.09009 * 109.47148 * 300.27745 * 11 10 8 36 36 H 1.08998 * 109.47454 * 60.27724 * 11 10 8 37 37 H 1.08995 * 109.46951 * 299.99784 * 12 11 10 38 38 H 1.09000 * 109.46819 * 60.00296 * 12 11 10 39 39 H 1.08995 * 109.47222 * 299.99716 * 13 12 11 40 40 H 1.08992 * 109.47217 * 60.00269 * 13 12 11 41 41 H 0.96994 * 120.00543 * 0.02562 * 14 13 12 42 42 H 1.09001 * 109.47324 * 300.00697 * 17 15 14 43 43 H 1.09006 * 109.46778 * 60.00365 * 17 15 14 44 44 H 0.96992 * 120.00453 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7072 -0.0062 5 7 3.6122 -0.6362 -0.0050 6 6 4.8306 -1.4497 -0.0100 7 6 2.3123 -1.1041 0.0022 8 6 1.8822 -2.5072 0.0054 9 8 1.5354 -3.0349 1.0456 10 7 1.8710 -3.2114 -1.1437 11 6 1.5516 -4.6410 -1.1237 12 6 1.6151 -5.1977 -2.5475 13 6 1.2820 -6.6909 -2.5265 14 7 1.3422 -7.2238 -3.8898 15 6 1.0840 -8.5271 -4.1158 16 8 0.8014 -9.2587 -3.1907 17 6 1.1453 -9.0753 -5.5183 18 16 0.7515 -10.8417 -5.4935 19 6 0.8941 -11.2111 -7.2105 20 1 1.1573 -10.4319 -7.9104 21 6 0.6670 -12.5033 -7.6635 22 7 0.3456 -13.4529 -6.8105 23 14 0.8188 -12.8950 -9.4837 24 1 2.1983 -12.5913 -9.9420 25 1 0.5295 -14.3345 -9.7060 26 1 -0.1501 -12.0708 -10.2499 27 1 -0.3633 0.0021 1.0277 28 1 -0.3633 0.8889 -0.5156 29 1 -0.3633 -0.8911 -0.5120 30 1 4.3970 1.3745 -0.0108 31 1 5.1772 -1.5785 -1.0353 32 1 5.6031 -0.9504 0.5747 33 1 4.6178 -2.4254 0.4268 34 1 2.0785 -2.7725 -1.9835 35 1 2.2721 -5.1656 -0.4960 36 1 0.5483 -4.7836 -0.7222 37 1 0.8946 -4.6732 -3.1751 38 1 2.6184 -5.0552 -2.9489 39 1 2.0028 -7.2151 -1.8990 40 1 0.2789 -6.8338 -2.1249 41 1 1.5686 -6.6388 -4.6297 42 1 0.4238 -8.5512 -6.1451 43 1 2.1481 -8.9318 -5.9209 44 1 0.1873 -14.3559 -7.1270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001686894412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -50.725186 kcal Electronic energy + Delta-G solvation = -25226.859117 eV Core-core repulsion = 21305.076682 eV Total energy + Delta-G solvation = -3921.782435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.23852 -40.70342 -40.43348 -37.27915 -35.61697 -35.43536 -34.57617 -33.02106 -32.14183 -30.58050 -29.33577 -27.69918 -27.19459 -26.29024 -23.75855 -22.84461 -21.75071 -21.72124 -20.91107 -19.81453 -18.76046 -17.77946 -17.71943 -17.20058 -17.13690 -16.86999 -16.79315 -16.51772 -16.39134 -15.80473 -15.74736 -15.05430 -14.94622 -14.67916 -14.48239 -14.37079 -14.08011 -13.95932 -13.57133 -13.36972 -13.28803 -13.22377 -13.16146 -13.13789 -12.85693 -12.64857 -12.60733 -12.11481 -11.75198 -11.68278 -11.12055 -11.03294 -10.94443 -10.63781 -10.29918 -10.26583 -10.11731 -9.48095 -8.66106 -8.33641 -6.12031 0.60815 1.07669 1.27586 1.44705 1.47602 1.56624 1.62213 1.71568 1.94830 2.13189 2.28308 2.40201 3.00521 3.33017 3.49241 3.63536 3.80366 3.86274 3.94118 3.95446 4.08637 4.14613 4.26730 4.31794 4.34668 4.49548 4.52855 4.56067 4.62101 4.71101 4.75013 4.81480 4.95297 5.04869 5.07246 5.12646 5.23024 5.42304 5.43487 5.51104 6.11347 6.20372 6.28701 6.52397 6.91879 6.96063 7.07555 7.26430 8.75269 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028523 B = 0.001427 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.435315 B =19612.480174 C =19794.370027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.044 3.956 3 N -0.530 5.530 4 C 0.215 3.785 5 N -0.437 5.437 6 C 0.061 3.939 7 C -0.102 4.102 8 C 0.603 3.397 9 O -0.565 6.565 10 N -0.699 5.699 11 C 0.122 3.878 12 C -0.122 4.122 13 C 0.121 3.879 14 N -0.710 5.710 15 C 0.532 3.468 16 O -0.568 6.568 17 C -0.129 4.129 18 S -0.156 6.156 19 C -0.547 4.547 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.261 1.261 25 H -0.280 1.280 26 H -0.262 1.262 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.253 0.747 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.074 0.926 34 H 0.418 0.582 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.419 0.581 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.642 32.212 8.515 34.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.089 4.089 3 N -0.250 5.250 4 C -0.067 4.067 5 N -0.119 5.119 6 C -0.079 4.079 7 C -0.219 4.219 8 C 0.387 3.613 9 O -0.442 6.442 10 N -0.351 5.351 11 C -0.002 4.002 12 C -0.160 4.160 13 C -0.003 4.003 14 N -0.365 5.365 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.280 4.280 18 S 0.071 5.929 19 C -0.695 4.695 20 H 0.102 0.898 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.186 1.186 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.257 0.743 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 9.792 31.117 10.827 34.371 hybrid contribution 0.679 -0.282 -2.256 2.373 sum 10.472 30.834 8.571 33.673 Atomic orbital electron populations 1.20164 0.86622 1.03478 1.02885 1.21182 0.97215 0.87228 1.03321 1.70028 1.01913 1.30662 1.22371 1.25846 0.97440 0.82020 1.01434 1.45533 1.05851 1.08131 1.52421 1.22479 0.83706 0.95682 1.06065 1.20567 0.86229 0.94219 1.20875 1.16960 0.77266 0.83441 0.83667 1.90869 1.48967 1.70825 1.33580 1.45822 1.69620 1.10186 1.09425 1.21265 1.01808 0.79390 0.97716 1.21796 1.05225 0.92863 0.96083 1.21221 1.01861 0.94205 0.83060 1.45650 1.71463 1.08509 1.10884 1.20088 0.75726 0.82642 0.89790 1.90705 1.48541 1.59222 1.46178 1.23375 1.06756 1.00749 0.97166 1.85623 1.91562 1.03233 1.12463 1.23184 1.55052 0.98581 0.92678 0.89752 1.26130 0.93784 0.94902 1.04335 1.70176 1.45129 1.02441 1.37055 0.85006 0.79416 0.77338 0.76244 1.18596 1.20538 1.18637 0.91112 0.89781 0.90880 0.73131 0.87498 0.86155 0.90734 0.74501 0.91228 0.91598 0.88407 0.88086 0.92133 0.92362 0.74342 0.87061 0.86979 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.24 71.24 0.73 -0.42 16 2 C 0.04 0.82 7.15 41.96 0.30 1.12 16 3 N -0.53 -9.62 11.20 -187.59 -2.10 -11.73 16 4 C 0.21 2.23 12.52 180.33 2.26 4.49 16 5 N -0.44 -4.55 3.17 -539.84 -1.71 -6.26 16 6 C 0.06 0.16 11.07 127.77 1.41 1.57 16 7 C -0.10 -1.70 6.66 40.01 0.27 -1.43 16 8 C 0.60 10.88 6.73 86.47 0.58 11.46 16 9 O -0.57 -15.36 17.12 -4.31 -0.07 -15.43 16 10 N -0.70 -7.52 5.55 -467.00 -2.59 -10.11 16 11 C 0.12 1.43 5.68 86.38 0.49 1.92 16 12 C -0.12 -0.97 5.44 30.60 0.17 -0.81 16 13 C 0.12 2.15 5.67 86.38 0.49 2.64 16 14 N -0.71 -15.02 5.56 -463.06 -2.57 -17.60 16 15 C 0.53 18.42 7.85 87.66 0.69 19.11 16 16 O -0.57 -25.67 15.86 -3.02 -0.05 -25.72 16 17 C -0.13 -4.85 6.16 71.24 0.44 -4.41 16 18 S -0.16 -8.52 20.57 -56.49 -1.16 -9.68 16 19 C -0.55 -30.71 9.50 67.95 0.65 -30.07 16 20 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 21 C 0.01 0.75 5.49 84.86 0.47 1.21 16 22 N -0.91 -55.63 13.22 21.65 0.29 -55.34 16 23 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 24 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 25 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.02 7.94 -2.39 -0.02 1.00 16 30 H 0.25 0.12 8.06 -2.91 -0.02 0.09 16 31 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 32 H 0.12 -0.29 8.14 -2.39 -0.02 -0.31 16 33 H 0.07 0.42 7.79 -2.39 -0.02 0.41 16 34 H 0.42 2.24 8.46 -92.71 -0.78 1.45 16 35 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 36 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.42 5.49 8.47 -92.71 -0.79 4.70 16 42 H 0.11 3.70 8.14 -2.40 -0.02 3.69 16 43 H 0.11 3.70 8.14 -2.39 -0.02 3.69 16 44 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -91.03 397.82 0.45 -90.58 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -0.54 Total: 10.05 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 8.94 Total: 6.38 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -8.69 Total: -101.04 kcal Atomic # 8 Polarization: -41.03 SS G_CDS: -0.12 Total: -41.15 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -91.03 0.45 -90.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001686894412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.854 kcal (2) G-P(sol) polarization free energy of solvation -91.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds