Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30445 * 125.98855 * 2 1 4 4 N 1.39939 * 108.89743 * 179.97438 * 3 2 1 5 5 H 0.96998 * 125.75221 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49150 * 0.23094 * 4 3 2 7 7 C 1.38049 * 107.41528 * 359.64104 * 6 4 3 8 8 C 1.47426 * 126.41005 * 180.10615 * 7 6 4 9 9 O 1.21612 * 119.99601 * 147.57034 * 8 7 6 10 10 N 1.34769 * 120.00281 * 327.55838 * 8 7 6 11 11 C 1.46497 * 120.00209 * 6.51512 * 10 8 7 12 12 C 1.46497 * 120.00157 * 186.50743 * 10 8 7 13 13 C 1.53007 * 109.47025 * 90.00694 * 12 10 8 14 14 C 1.52997 * 109.47271 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.47043 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99878 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00321 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99919 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47123 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00287 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99438 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00313 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99986 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47133 * 90.00057 * 24 22 20 26 26 H 1.48496 * 109.46766 * 210.00100 * 24 22 20 27 27 H 1.48505 * 109.47007 * 329.99952 * 24 22 20 28 28 H 1.09002 * 109.47305 * 90.02002 * 1 2 3 29 29 H 1.09000 * 109.46928 * 210.02314 * 1 2 3 30 30 H 1.08996 * 109.47127 * 330.01824 * 1 2 3 31 31 H 1.07996 * 126.29179 * 179.74857 * 6 4 3 32 32 H 1.08999 * 109.47430 * 95.99762 * 11 10 8 33 33 H 1.08998 * 109.47466 * 216.00248 * 11 10 8 34 34 H 1.09000 * 109.46856 * 336.00203 * 11 10 8 35 35 H 1.09003 * 109.47498 * 210.00015 * 12 10 8 36 36 H 1.08994 * 109.47611 * 330.00604 * 12 10 8 37 37 H 1.09008 * 109.46882 * 300.00121 * 13 12 10 38 38 H 1.08998 * 109.46998 * 60.00036 * 13 12 10 39 39 H 1.09008 * 109.47007 * 299.99728 * 14 13 12 40 40 H 1.08998 * 109.47339 * 59.99927 * 14 13 12 41 41 H 0.96992 * 119.99794 * 0.02562 * 15 14 13 42 42 H 1.08999 * 109.47471 * 300.00371 * 18 16 15 43 43 H 1.08998 * 109.46841 * 60.00449 * 18 16 15 44 44 H 0.96999 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3841 1.2301 0.0004 6 6 3.6439 -0.6980 -0.0042 7 6 2.3372 -1.1433 0.0005 8 6 1.8916 -2.5486 -0.0001 9 8 0.8628 -2.8603 0.5685 10 7 2.6242 -3.4876 -0.6308 11 6 3.9321 -3.1412 -1.1925 12 6 2.1128 -4.8548 -0.7545 13 6 1.3054 -4.9822 -2.0479 14 6 0.7707 -6.4099 -2.1769 15 7 -0.0029 -6.5317 -3.4150 16 6 -0.5731 -7.7087 -3.7404 17 8 -0.4461 -8.6671 -3.0079 18 6 -1.3693 -7.8338 -5.0137 19 16 -2.0017 -9.5229 -5.1663 20 6 -2.8661 -9.3890 -6.6959 21 1 -2.8803 -8.4490 -7.2275 22 6 -3.5295 -10.4912 -7.2171 23 7 -4.1756 -10.3909 -8.3594 24 14 -3.5065 -12.1164 -6.2964 25 1 -4.6613 -12.1737 -5.3644 26 1 -3.5978 -13.2364 -7.2672 27 1 -2.2423 -12.2309 -5.5258 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.5297 -1.3157 -0.0088 32 1 4.7145 -3.4034 -0.4803 33 1 4.0863 -3.6917 -2.1206 34 1 3.9687 -2.0708 -1.3946 35 1 2.9482 -5.5546 -0.7773 36 1 1.4720 -5.0816 0.0976 37 1 0.4699 -4.2824 -2.0251 38 1 1.9461 -4.7555 -2.9000 39 1 1.6059 -7.1100 -2.1995 40 1 0.1298 -6.6362 -1.3247 41 1 -0.1041 -5.7654 -4.0009 42 1 -2.2047 -7.1342 -4.9901 43 1 -0.7292 -7.6068 -5.8662 44 1 -4.6395 -11.1611 -8.7234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687390191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = 4.721886 kcal Electronic energy + Delta-G solvation = -25717.731522 eV Core-core repulsion = 21798.353453 eV Total energy + Delta-G solvation = -3919.378069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03725 -39.82538 -39.19294 -36.52148 -35.09117 -33.45946 -32.49979 -32.41384 -30.72040 -29.23196 -28.43370 -27.48725 -25.80204 -25.49251 -23.06187 -22.04043 -20.99028 -20.34031 -19.87798 -18.21667 -17.84686 -17.16385 -16.61030 -16.40669 -15.96951 -15.72430 -15.51107 -15.12016 -14.98994 -14.91996 -14.57547 -13.95563 -13.75201 -13.62898 -13.30484 -13.21956 -13.17655 -12.90398 -12.79410 -12.72129 -12.54979 -12.33442 -11.91645 -11.84294 -11.39386 -11.24904 -11.10060 -10.98953 -10.59230 -10.22833 -10.00989 -9.84428 -9.54304 -9.31709 -9.08406 -9.00223 -8.93745 -8.48070 -6.89870 -6.27325 -3.98901 0.98441 1.69514 2.11811 2.51475 2.81514 2.88197 3.00658 3.33667 3.37345 3.52223 3.69232 3.95372 4.01931 4.34883 4.39343 4.53641 4.63738 4.69762 4.70810 4.73157 4.83232 4.92087 4.98000 5.09413 5.11759 5.16002 5.30867 5.32684 5.34654 5.44546 5.56186 5.58900 5.76715 5.85015 5.90305 6.01678 6.03795 6.09689 6.52508 6.55066 6.89928 7.05278 7.63348 7.84331 7.95751 8.43296 8.51795 9.18932 10.81888 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.001646 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.306559 B =17009.658414 C =17438.063905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.134 3.866 3 N -0.297 5.297 4 N -0.463 5.463 5 H 0.444 0.556 6 C 0.095 3.905 7 C -0.285 4.285 8 C 0.594 3.406 9 O -0.531 6.531 10 N -0.614 5.614 11 C 0.061 3.939 12 C 0.120 3.880 13 C -0.146 4.146 14 C 0.125 3.875 15 N -0.737 5.737 16 C 0.530 3.470 17 O -0.520 6.520 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.081 0.919 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.192 0.808 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.399 0.601 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.593 23.567 16.719 36.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.034 4.034 3 N -0.120 5.120 4 N -0.167 5.167 5 H 0.289 0.711 6 C -0.057 4.057 7 C -0.300 4.300 8 C 0.382 3.618 9 O -0.407 6.407 10 N -0.347 5.347 11 C -0.082 4.082 12 C -0.003 4.003 13 C -0.185 4.185 14 C 0.000 4.000 15 N -0.391 5.391 16 C 0.316 3.684 17 O -0.395 6.395 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.209 0.791 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.171 22.973 18.123 36.117 hybrid contribution 0.370 0.233 -1.165 1.244 sum 21.540 23.206 16.959 35.918 Atomic orbital electron populations 1.20414 0.85582 1.04742 1.03702 1.22486 0.97427 0.88528 0.94934 1.77208 0.86236 1.22383 1.26195 1.46157 1.07912 1.05480 1.57177 0.71086 1.23508 0.99116 0.85601 0.97482 1.20238 0.92337 0.94552 1.22858 1.17333 0.83172 0.83542 0.77718 1.90786 1.24776 1.81404 1.43738 1.47629 1.19527 1.10406 1.57130 1.22253 0.84113 1.02554 0.99263 1.21365 0.98848 0.81621 0.98483 1.22144 1.00797 0.97003 0.98552 1.21151 0.95674 0.95659 0.87527 1.45936 1.55191 1.13318 1.24679 1.20274 0.78772 0.82215 0.87133 1.90700 1.59410 1.37498 1.51848 1.23279 1.02076 1.04837 0.97293 1.84785 1.67291 1.08010 1.31493 1.22324 1.37006 1.01969 1.05607 0.89391 1.24714 0.93522 0.98749 0.94340 1.69938 1.32141 1.31437 1.18199 0.86729 0.81417 0.83133 0.80541 1.19193 1.19963 1.15921 0.90078 0.88424 0.90497 0.79103 0.92213 0.90786 0.89990 0.89944 0.88949 0.90699 0.91138 0.91499 0.91277 0.76693 0.88481 0.88492 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 10.24 36.00 0.37 -0.32 16 2 C 0.13 1.21 7.26 -82.02 -0.60 0.62 16 3 N -0.30 -2.54 12.63 33.89 0.43 -2.11 16 4 N -0.46 -2.15 7.29 30.85 0.22 -1.93 16 5 H 0.44 0.45 8.96 -182.72 -1.64 -1.19 16 6 C 0.10 0.41 9.60 -16.56 -0.16 0.25 16 7 C -0.28 -2.27 5.60 -105.07 -0.59 -2.86 16 8 C 0.59 5.62 7.52 -12.52 -0.09 5.53 16 9 O -0.53 -6.92 14.99 5.27 0.08 -6.84 16 10 N -0.61 -4.15 2.87 -182.85 -0.53 -4.68 16 11 C 0.06 0.18 9.15 59.85 0.55 0.73 16 12 C 0.12 0.85 5.49 -4.04 -0.02 0.83 16 13 C -0.15 -1.13 5.65 -26.73 -0.15 -1.28 16 14 C 0.12 1.33 5.67 -4.04 -0.02 1.31 16 15 N -0.74 -9.34 5.56 -60.29 -0.33 -9.67 16 16 C 0.53 9.48 7.85 -10.99 -0.09 9.39 16 17 O -0.52 -11.32 15.86 5.55 0.09 -11.23 16 18 C -0.12 -2.42 6.16 36.01 0.22 -2.19 16 19 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 20 C -0.52 -15.12 10.04 30.94 0.31 -14.81 16 21 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 22 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 24 Si 0.86 21.91 27.74 -169.99 -4.72 17.20 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 0.91 6.58 -51.93 -0.34 0.57 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.19 0.05 6.03 -52.49 -0.32 -0.26 16 32 H 0.06 0.07 7.98 -51.93 -0.41 -0.34 16 33 H 0.07 0.18 8.12 -51.93 -0.42 -0.24 16 34 H 0.08 0.18 4.47 -51.93 -0.23 -0.06 16 35 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 36 H 0.09 0.82 7.34 -51.93 -0.38 0.44 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.40 3.95 8.47 -40.82 -0.35 3.60 16 42 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 383.63 15.07 5.78 5.78 Total: -1.00 -39.44 383.63 -8.03 -47.47 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -7.47 Total: -2.35 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.37 Total: -0.11 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.57 Total: -44.28 kcal Atomic # 8 Polarization: -18.24 SS G_CDS: 0.17 Total: -18.07 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.72 Total: 17.20 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.44 -8.03 -47.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687390191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.188 kcal (2) G-P(sol) polarization free energy of solvation -39.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds