Wall clock time and date at job start Sat Apr 11 2020 05:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30445 * 125.98855 * 2 1 4 4 N 1.39939 * 108.89743 * 179.97438 * 3 2 1 5 5 H 0.96998 * 125.75221 * 179.97438 * 4 3 2 6 6 C 1.34261 * 108.49150 * 0.23094 * 4 3 2 7 7 C 1.38049 * 107.41528 * 359.64104 * 6 4 3 8 8 C 1.47426 * 126.41005 * 180.10615 * 7 6 4 9 9 O 1.21612 * 119.99601 * 147.57034 * 8 7 6 10 10 N 1.34769 * 120.00281 * 327.55838 * 8 7 6 11 11 C 1.46497 * 120.00209 * 6.51512 * 10 8 7 12 12 C 1.46497 * 120.00157 * 186.50743 * 10 8 7 13 13 C 1.53007 * 109.47025 * 90.00694 * 12 10 8 14 14 C 1.52997 * 109.47271 * 180.02562 * 13 12 10 15 15 N 1.46504 * 109.47043 * 179.97438 * 14 13 12 16 16 C 1.34773 * 119.99878 * 179.97438 * 15 14 13 17 17 O 1.21285 * 120.00321 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99919 * 179.97438 * 16 15 14 19 19 S 1.80999 * 109.47123 * 180.02562 * 18 16 15 20 20 C 1.76203 * 100.00287 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99438 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00313 * 180.02562 * 20 19 18 23 23 N 1.31625 * 119.99986 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99873 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.47133 * 90.00057 * 24 22 20 26 26 H 1.48496 * 109.46766 * 210.00100 * 24 22 20 27 27 H 1.48505 * 109.47007 * 329.99952 * 24 22 20 28 28 H 1.09002 * 109.47305 * 90.02002 * 1 2 3 29 29 H 1.09000 * 109.46928 * 210.02314 * 1 2 3 30 30 H 1.08996 * 109.47127 * 330.01824 * 1 2 3 31 31 H 1.07996 * 126.29179 * 179.74857 * 6 4 3 32 32 H 1.08999 * 109.47430 * 95.99762 * 11 10 8 33 33 H 1.08998 * 109.47466 * 216.00248 * 11 10 8 34 34 H 1.09000 * 109.46856 * 336.00203 * 11 10 8 35 35 H 1.09003 * 109.47498 * 210.00015 * 12 10 8 36 36 H 1.08994 * 109.47611 * 330.00604 * 12 10 8 37 37 H 1.09008 * 109.46882 * 300.00121 * 13 12 10 38 38 H 1.08998 * 109.46998 * 60.00036 * 13 12 10 39 39 H 1.09008 * 109.47007 * 299.99728 * 14 13 12 40 40 H 1.08998 * 109.47339 * 59.99927 * 14 13 12 41 41 H 0.96992 * 119.99794 * 0.02562 * 15 14 13 42 42 H 1.08999 * 109.47471 * 300.00371 * 18 16 15 43 43 H 1.08998 * 109.46841 * 60.00449 * 18 16 15 44 44 H 0.96999 * 119.99966 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 0.0006 5 1 4.3841 1.2301 0.0004 6 6 3.6439 -0.6980 -0.0042 7 6 2.3372 -1.1433 0.0005 8 6 1.8916 -2.5486 -0.0001 9 8 0.8628 -2.8603 0.5685 10 7 2.6242 -3.4876 -0.6308 11 6 3.9321 -3.1412 -1.1925 12 6 2.1128 -4.8548 -0.7545 13 6 1.3054 -4.9822 -2.0479 14 6 0.7707 -6.4099 -2.1769 15 7 -0.0029 -6.5317 -3.4150 16 6 -0.5731 -7.7087 -3.7404 17 8 -0.4461 -8.6671 -3.0079 18 6 -1.3693 -7.8338 -5.0137 19 16 -2.0017 -9.5229 -5.1663 20 6 -2.8661 -9.3890 -6.6959 21 1 -2.8803 -8.4490 -7.2275 22 6 -3.5295 -10.4912 -7.2171 23 7 -4.1756 -10.3909 -8.3594 24 14 -3.5065 -12.1164 -6.2964 25 1 -4.6613 -12.1737 -5.3644 26 1 -3.5978 -13.2364 -7.2672 27 1 -2.2423 -12.2309 -5.5258 28 1 -0.3634 -0.0004 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5135 31 1 4.5297 -1.3157 -0.0088 32 1 4.7145 -3.4034 -0.4803 33 1 4.0863 -3.6917 -2.1206 34 1 3.9687 -2.0708 -1.3946 35 1 2.9482 -5.5546 -0.7773 36 1 1.4720 -5.0816 0.0976 37 1 0.4699 -4.2824 -2.0251 38 1 1.9461 -4.7555 -2.9000 39 1 1.6059 -7.1100 -2.1995 40 1 0.1298 -6.6362 -1.3247 41 1 -0.1041 -5.7654 -4.0009 42 1 -2.2047 -7.1342 -4.9901 43 1 -0.7292 -7.6068 -5.8662 44 1 -4.6395 -11.1611 -8.7234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001687390191.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:08 Heat of formation + Delta-G solvation = -26.041574 kcal Electronic energy + Delta-G solvation = -25719.065526 eV Core-core repulsion = 21798.353453 eV Total energy + Delta-G solvation = -3920.712073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.52508 -40.70161 -40.30032 -37.27678 -36.05564 -34.66792 -33.98380 -33.36727 -31.53970 -30.39728 -29.00628 -27.96961 -27.80658 -26.45070 -23.66928 -22.69026 -21.91649 -21.29569 -20.41037 -19.86528 -18.68354 -17.84381 -17.75777 -17.47310 -17.08329 -16.82369 -16.56511 -16.46724 -15.75112 -15.67273 -15.52090 -15.41197 -14.93193 -14.69832 -14.37109 -14.17451 -13.88772 -13.81961 -13.73499 -13.38802 -13.32541 -13.20158 -13.11069 -12.98922 -12.71907 -12.66319 -12.54398 -11.93588 -11.85753 -11.77219 -11.16613 -11.05126 -10.90191 -10.53181 -10.52073 -10.13037 -9.85261 -9.59543 -8.99071 -8.50957 -6.21835 0.57845 0.99496 1.07965 1.32451 1.47441 1.56049 1.57362 1.74948 2.00844 2.25162 2.29975 2.35083 2.73085 2.87275 3.45581 3.71437 3.84054 3.88889 3.99926 4.13857 4.19909 4.21361 4.24229 4.34316 4.46204 4.47750 4.52632 4.61993 4.70045 4.71497 4.84362 4.86146 4.94736 4.97993 5.10338 5.16845 5.41976 5.42917 5.59161 5.71294 6.11953 6.26493 6.38950 6.47042 6.55600 6.94204 7.19652 7.23890 8.61379 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.001646 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.306559 B =17009.658414 C =17438.063905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.113 3.887 3 N -0.327 5.327 4 N -0.449 5.449 5 H 0.461 0.539 6 C 0.129 3.871 7 C -0.318 4.318 8 C 0.588 3.412 9 O -0.582 6.582 10 N -0.609 5.609 11 C 0.052 3.948 12 C 0.119 3.881 13 C -0.129 4.129 14 C 0.125 3.875 15 N -0.713 5.713 16 C 0.534 3.466 17 O -0.563 6.563 18 C -0.112 4.112 19 S -0.176 6.176 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.045 3.955 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.258 1.258 27 H -0.236 1.236 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.238 0.762 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.053 0.947 41 H 0.416 0.584 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.800 24.304 17.120 38.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.054 4.054 3 N -0.151 5.151 4 N -0.155 5.155 5 H 0.310 0.690 6 C -0.025 4.025 7 C -0.333 4.333 8 C 0.378 3.622 9 O -0.462 6.462 10 N -0.340 5.340 11 C -0.089 4.089 12 C -0.004 4.004 13 C -0.168 4.168 14 C 0.001 3.999 15 N -0.366 5.366 16 C 0.319 3.681 17 O -0.442 6.442 18 C -0.263 4.263 19 S 0.050 5.950 20 C -0.677 4.677 21 H 0.081 0.919 22 C -0.160 4.160 23 N -0.554 5.554 24 Si 0.737 3.263 25 H -0.188 1.188 26 H -0.182 1.182 27 H -0.160 1.160 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.254 0.746 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.253 0.747 42 H 0.129 0.871 43 H 0.134 0.866 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.438 23.790 18.493 38.797 hybrid contribution -0.496 0.190 -1.284 1.389 sum 23.942 23.980 17.210 38.006 Atomic orbital electron populations 1.20336 0.86049 1.04040 1.03758 1.22626 0.97770 0.89381 0.95620 1.77128 0.87903 1.22762 1.27294 1.46198 1.07329 1.06157 1.55803 0.69038 1.24071 0.99072 0.85417 0.93925 1.20251 0.93846 0.93569 1.25616 1.17629 0.82719 0.84464 0.77353 1.90756 1.27077 1.82227 1.46158 1.47690 1.20510 1.09602 1.56200 1.22569 0.82515 1.03440 1.00420 1.21336 0.99429 0.82602 0.97025 1.21994 1.00618 0.94372 0.99841 1.21280 0.95205 0.97761 0.85698 1.45741 1.53525 1.12108 1.25272 1.19952 0.78843 0.83108 0.86149 1.90690 1.61299 1.39280 1.52921 1.23277 1.03073 1.00653 0.99283 1.84706 1.67322 1.13553 1.29372 1.22468 1.37352 1.01067 1.06853 0.91948 1.25569 0.93223 1.02074 0.95142 1.70014 1.33075 1.32796 1.19564 0.85861 0.81320 0.79534 0.79613 1.18816 1.18249 1.16001 0.89675 0.90275 0.89931 0.74609 0.89563 0.89521 0.89061 0.87268 0.91369 0.92198 0.88948 0.90861 0.92849 0.74733 0.87058 0.86599 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.24 71.23 0.73 -0.71 16 2 C 0.11 2.04 7.26 43.51 0.32 2.36 16 3 N -0.33 -5.30 12.63 -46.68 -0.59 -5.89 16 4 N -0.45 -3.01 7.29 -56.32 -0.41 -3.42 16 5 H 0.46 -0.49 8.96 -213.43 -1.91 -2.41 16 6 C 0.13 0.68 9.60 84.28 0.81 1.49 16 7 C -0.32 -4.69 5.60 -20.15 -0.11 -4.81 16 8 C 0.59 10.82 7.52 86.66 0.65 11.47 16 9 O -0.58 -15.92 14.99 -4.07 -0.06 -15.99 16 10 N -0.61 -6.87 2.87 -850.68 -2.44 -9.32 16 11 C 0.05 0.08 9.15 127.77 1.17 1.25 16 12 C 0.12 1.49 5.49 86.38 0.47 1.96 16 13 C -0.13 -1.74 5.65 30.60 0.17 -1.57 16 14 C 0.12 2.45 5.67 86.38 0.49 2.95 16 15 N -0.71 -16.63 5.56 -463.05 -2.57 -19.20 16 16 C 0.53 18.38 7.85 87.66 0.69 19.07 16 17 O -0.56 -24.21 15.86 -3.05 -0.05 -24.26 16 18 C -0.11 -4.22 6.16 71.24 0.44 -3.78 16 19 S -0.18 -8.96 18.55 -56.49 -1.05 -10.01 16 20 C -0.53 -31.03 10.04 67.95 0.68 -30.35 16 21 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -56.02 13.97 21.65 0.30 -55.72 16 24 Si 0.91 45.26 27.74 68.60 1.90 47.16 16 25 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 26 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.24 -11.64 6.74 99.48 0.67 -10.97 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 29 H 0.08 1.65 6.58 -2.39 -0.02 1.64 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 31 H 0.24 -1.13 6.03 -2.91 -0.02 -1.14 16 32 H 0.09 -0.25 7.98 -2.39 -0.02 -0.27 16 33 H 0.09 -0.01 8.12 -2.39 -0.02 -0.03 16 34 H 0.09 -0.02 4.47 -2.39 -0.01 -0.03 16 35 H 0.11 0.79 8.07 -2.39 -0.02 0.77 16 36 H 0.07 1.21 7.34 -2.39 -0.02 1.20 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.42 7.10 8.47 -92.71 -0.79 6.32 16 42 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 43 H 0.12 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -89.20 383.63 0.32 -88.88 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.68 Total: 5.28 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 6.97 Total: 2.47 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -5.71 Total: -93.54 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.11 Total: -40.24 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.96 SS G_CDS: -1.05 Total: -10.01 kcal Total: -89.20 0.32 -88.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687390191.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.835 kcal (2) G-P(sol) polarization free energy of solvation -89.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds