Wall clock time and date at job start Sat Apr 11 2020 05:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33318 * 126.10574 * 2 1 4 4 C 1.30863 * 109.68510 * 179.76803 * 3 2 1 5 5 N 1.34497 * 109.16126 * 0.41168 * 4 3 2 6 6 H 0.97001 * 126.47393 * 179.86674 * 5 4 3 7 7 C 1.36660 * 126.10716 * 180.02562 * 2 1 3 8 8 C 1.46767 * 126.84829 * 359.97438 * 7 2 1 9 9 O 1.21688 * 119.99704 * 359.96673 * 8 7 2 10 10 N 1.34771 * 120.00285 * 179.97438 * 8 7 2 11 11 C 1.46504 * 119.99957 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47180 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47619 * 180.02562 * 12 11 10 14 14 N 1.46496 * 109.47411 * 180.02562 * 13 12 11 15 15 C 1.46503 * 120.00232 * 89.99892 * 14 13 12 16 16 C 1.34776 * 119.99892 * 269.99418 * 14 13 12 17 17 O 1.21285 * 120.00255 * 0.02562 * 16 14 13 18 18 C 1.50704 * 119.99972 * 179.97438 * 16 14 13 19 19 S 1.81003 * 109.46693 * 180.02562 * 18 16 14 20 20 C 1.76205 * 99.99721 * 180.02562 * 19 18 16 21 21 H 1.08006 * 119.99864 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00297 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99692 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00219 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47242 * 60.00114 * 24 22 20 26 26 H 1.48501 * 109.47199 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47047 * 300.00063 * 24 22 20 28 28 H 1.09001 * 109.47328 * 269.97186 * 1 2 3 29 29 H 1.08991 * 109.47030 * 29.97797 * 1 2 3 30 30 H 1.09009 * 109.46920 * 149.97990 * 1 2 3 31 31 H 1.07995 * 125.41952 * 180.25005 * 4 3 2 32 32 H 0.96999 * 120.00020 * 359.97438 * 10 8 7 33 33 H 1.08996 * 109.47353 * 299.99794 * 11 10 8 34 34 H 1.09002 * 109.47038 * 60.00520 * 11 10 8 35 35 H 1.09004 * 109.47250 * 300.00683 * 12 11 10 36 36 H 1.08997 * 109.47279 * 60.00047 * 12 11 10 37 37 H 1.08999 * 109.46674 * 300.00330 * 13 12 11 38 38 H 1.08997 * 109.46995 * 59.99580 * 13 12 11 39 39 H 1.09001 * 109.46579 * 89.99677 * 15 14 13 40 40 H 1.08995 * 109.46845 * 209.99713 * 15 14 13 41 41 H 1.08998 * 109.46869 * 330.00002 * 15 14 13 42 42 H 1.08998 * 109.47131 * 299.99968 * 18 16 14 43 43 H 1.09000 * 109.46834 * 60.00697 * 18 16 14 44 44 H 0.96998 * 119.99844 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5479 0.7072 0.0050 5 7 3.6122 -0.6362 -0.0007 6 1 4.4189 -1.1749 -0.0007 7 6 2.3124 -1.1041 -0.0005 8 6 1.8822 -2.5073 -0.0006 9 8 0.6962 -2.7801 0.0004 10 7 2.8005 -3.4937 -0.0016 11 6 2.3710 -4.8944 -0.0012 12 6 3.6006 -5.8049 -0.0032 13 6 3.1521 -7.2676 -0.0034 14 7 4.3295 -8.1394 -0.0047 15 6 4.9193 -8.5758 1.2634 16 6 4.8700 -8.5400 -1.1725 17 8 4.3819 -8.1785 -2.2223 18 6 6.0815 -9.4364 -1.1739 19 16 6.5651 -9.7943 -2.8810 20 6 7.9621 -10.8288 -2.5927 21 1 8.2674 -11.0545 -1.5815 22 6 8.6701 -11.3537 -3.6649 23 7 8.2982 -11.0782 -4.8972 24 14 10.1515 -12.4497 -3.3592 25 1 9.7310 -13.6463 -2.5868 26 1 10.7273 -12.8777 -4.6594 27 1 11.1735 -11.6970 -2.5884 28 1 -0.3634 -0.0005 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 4.3970 1.3744 0.0100 32 1 3.7458 -3.2763 -0.0027 33 1 1.7742 -5.0912 0.8895 34 1 1.7723 -5.0911 -0.8905 35 1 4.1970 -5.6079 -0.8940 36 1 4.1997 -5.6083 0.8859 37 1 2.5555 -7.4648 0.8873 38 1 2.5532 -7.4639 -0.8926 39 1 4.4540 -9.5099 1.5781 40 1 5.9903 -8.7295 1.1320 41 1 4.7523 -7.8126 2.0234 42 1 6.9034 -8.9371 -0.6609 43 1 5.8447 -10.3680 -0.6600 44 1 8.7932 -11.4447 -5.6465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687540106.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:10 Heat of formation + Delta-G solvation = -20.341742 kcal Electronic energy + Delta-G solvation = -25650.982256 eV Core-core repulsion = 21730.517346 eV Total energy + Delta-G solvation = -3920.464910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.64964 -39.81252 -39.44435 -36.36487 -35.20245 -33.73000 -32.47681 -32.34285 -31.39315 -29.31329 -27.79387 -26.96070 -25.64532 -25.15975 -23.32490 -22.27102 -21.52259 -20.16689 -19.33325 -19.11581 -17.74488 -16.83751 -16.58165 -16.52079 -16.21296 -15.72953 -15.49562 -15.39136 -14.85728 -14.84308 -14.31396 -14.26132 -13.91781 -13.42052 -13.29768 -13.10679 -13.08700 -12.72546 -12.69298 -12.53628 -12.42556 -12.28903 -11.93202 -11.87250 -11.10648 -11.09019 -11.07964 -10.86712 -10.80673 -10.45831 -10.26644 -9.86715 -9.57875 -9.45798 -9.10689 -8.90156 -8.66525 -8.29079 -6.55975 -6.26270 -3.97601 0.86072 2.38950 2.41983 2.63041 2.90298 2.92953 2.98227 3.19308 3.21859 3.25292 3.53918 4.02270 4.15608 4.33468 4.53187 4.58577 4.70580 4.79825 4.87518 4.89757 5.03842 5.08797 5.19607 5.25244 5.27695 5.35131 5.50079 5.51249 5.53681 5.61862 5.62735 5.72215 5.80588 5.82563 5.88989 5.98028 6.06209 6.20149 6.53634 6.70082 6.97078 7.42101 7.47460 7.54324 7.72917 8.29967 8.46278 9.18817 10.81053 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.019419 B = 0.001722 C = 0.001655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.556017 B =16256.814398 C =16912.449297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.100 3.900 3 N -0.500 5.500 4 C 0.223 3.777 5 N -0.556 5.556 6 H 0.423 0.577 7 C -0.097 4.097 8 C 0.595 3.405 9 O -0.521 6.521 10 N -0.728 5.728 11 C 0.124 3.876 12 C -0.149 4.149 13 C 0.122 3.878 14 N -0.626 5.626 15 C 0.080 3.920 16 C 0.532 3.468 17 O -0.514 6.514 18 C -0.151 4.151 19 S -0.062 6.062 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.217 0.783 32 H 0.395 0.605 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.784 18.612 16.176 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.035 4.035 3 N -0.220 5.220 4 C -0.061 4.061 5 N -0.161 5.161 6 H 0.262 0.738 7 C -0.212 4.212 8 C 0.382 3.618 9 O -0.396 6.396 10 N -0.380 5.380 11 C 0.000 4.000 12 C -0.188 4.188 13 C -0.002 4.002 14 N -0.362 5.362 15 C -0.063 4.063 16 C 0.320 3.680 17 O -0.387 6.387 18 C -0.301 4.301 19 S 0.165 5.835 20 C -0.685 4.685 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.658 19.663 14.411 26.607 hybrid contribution 3.096 -2.038 1.533 4.011 sum -7.562 17.626 15.944 24.941 Atomic orbital electron populations 1.20318 0.86373 1.03837 1.03128 1.21130 0.97022 0.86587 0.98730 1.70174 1.00493 1.30438 1.20935 1.25201 0.97480 0.82022 1.01389 1.43354 1.07988 1.08901 1.55890 0.73835 1.20921 0.84428 0.95048 1.20847 1.16800 0.85869 0.82558 0.76585 1.90839 1.15942 1.82875 1.49972 1.45883 1.09246 1.06753 1.76093 1.21330 0.96974 0.78573 1.03099 1.22191 0.97664 0.95502 1.03438 1.21206 0.87728 0.87654 1.03590 1.47863 1.31043 1.50745 1.06529 1.21774 0.99502 0.99858 0.85187 1.20390 0.84593 0.80184 0.82847 1.90703 1.61713 1.55633 1.30687 1.23562 0.97388 1.00800 1.08365 1.85407 1.36918 1.63902 0.97274 1.22812 1.15103 1.35116 0.95450 0.90993 1.24993 0.97827 0.96302 0.94427 1.70007 1.39454 1.42704 0.98059 0.86224 0.81342 0.80223 0.77712 1.19913 1.20777 1.19954 0.90652 0.90941 0.89189 0.76673 0.77211 0.90917 0.90571 0.90391 0.91273 0.90452 0.89336 0.92589 0.90629 0.91463 0.89303 0.89228 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.88 36.01 0.36 -0.38 16 2 C 0.10 1.04 7.15 -82.52 -0.59 0.45 16 3 N -0.50 -4.97 11.20 -10.64 -0.12 -5.09 16 4 C 0.22 1.36 13.01 -90.57 -1.18 0.18 16 5 N -0.56 -3.11 6.07 -10.79 -0.07 -3.18 16 6 H 0.42 0.92 8.32 -40.82 -0.34 0.58 16 7 C -0.10 -0.90 7.08 -82.14 -0.58 -1.48 16 8 C 0.60 6.13 7.79 -12.82 -0.10 6.03 16 9 O -0.52 -6.92 14.82 5.20 0.08 -6.84 16 10 N -0.73 -5.72 5.55 -61.59 -0.34 -6.06 16 11 C 0.12 1.04 5.67 -4.04 -0.02 1.02 16 12 C -0.15 -1.27 5.65 -26.73 -0.15 -1.42 16 13 C 0.12 1.24 5.41 -4.05 -0.02 1.22 16 14 N -0.63 -7.87 2.87 -181.58 -0.52 -8.39 16 15 C 0.08 0.72 10.24 59.85 0.61 1.33 16 16 C 0.53 9.50 7.69 -10.98 -0.08 9.42 16 17 O -0.51 -11.14 15.44 5.55 0.09 -11.05 16 18 C -0.15 -2.93 4.71 36.01 0.17 -2.76 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -14.97 9.50 30.94 0.29 -14.67 16 21 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 22 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.77 13.22 55.49 0.73 -25.03 16 24 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.92 6.48 -51.92 -0.34 0.58 16 31 H 0.22 0.34 8.06 -52.49 -0.42 -0.08 16 32 H 0.39 2.08 7.72 -40.82 -0.31 1.77 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 38 H 0.09 1.08 7.42 -51.93 -0.39 0.69 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 41 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 42 H 0.09 1.58 7.40 -51.92 -0.38 1.19 16 43 H 0.09 1.63 8.11 -51.92 -0.42 1.21 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 389.09 15.07 5.86 5.86 Total: -1.00 -38.41 389.09 -9.20 -47.60 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.28 Total: -0.85 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.39 Total: 0.93 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: -0.31 Total: -47.76 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.16 Total: -17.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.41 -9.20 -47.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687540106.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.263 kcal (2) G-P(sol) polarization free energy of solvation -38.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds