Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39664 * 127.31939 * 2 1 4 4 N 1.30871 * 107.86218 * 179.97438 * 3 2 1 5 5 N 1.28440 * 110.92391 * 359.71256 * 4 3 2 6 6 C 1.46495 * 125.19159 * 180.28252 * 5 4 3 7 7 C 1.36601 * 109.62100 * 0.46124 * 5 4 3 8 8 C 1.47166 * 126.88566 * 179.81330 * 7 5 4 9 9 O 1.21627 * 119.99613 * 98.28651 * 8 7 5 10 10 N 1.34768 * 119.99981 * 278.28893 * 8 7 5 11 11 C 1.46505 * 119.99828 * 174.81707 * 10 8 7 12 12 H 1.08997 * 109.47376 * 325.00023 * 11 10 8 13 13 C 1.52999 * 109.46898 * 85.00156 * 11 10 8 14 14 C 1.52998 * 109.47148 * 204.99734 * 11 10 8 15 15 N 1.46496 * 109.47131 * 55.00059 * 14 11 10 16 16 C 1.34776 * 120.00096 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00034 * 0.02562 * 16 15 14 18 18 C 1.50703 * 120.00101 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47408 * 179.97438 * 18 16 15 20 20 C 1.76194 * 100.00271 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99651 * 0.02562 * 20 19 18 22 22 C 1.38792 * 120.00193 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00315 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 120.00066 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47168 * 59.99890 * 24 22 20 26 26 H 1.48502 * 109.47096 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.46957 * 299.99775 * 24 22 20 28 28 H 1.08999 * 109.46877 * 270.02421 * 1 2 3 29 29 H 1.08998 * 109.47404 * 30.02310 * 1 2 3 30 30 H 1.08996 * 109.47248 * 150.02942 * 1 2 3 31 31 H 1.07996 * 126.07207 * 359.94018 * 3 2 1 32 32 H 1.08998 * 109.47317 * 274.89731 * 6 5 4 33 33 H 1.08997 * 109.47290 * 34.89550 * 6 5 4 34 34 H 1.08996 * 109.47743 * 154.89726 * 6 5 4 35 35 H 0.96999 * 120.00586 * 354.81684 * 10 8 7 36 36 H 1.09001 * 109.47708 * 59.99781 * 13 11 10 37 37 H 1.09000 * 109.47283 * 180.02562 * 13 11 10 38 38 H 1.09005 * 109.46954 * 299.99656 * 13 11 10 39 39 H 1.08995 * 109.47390 * 175.00093 * 14 11 10 40 40 H 1.09005 * 109.47523 * 295.00447 * 14 11 10 41 41 H 0.97003 * 120.00117 * 359.97438 * 15 14 11 42 42 H 1.08998 * 109.47618 * 300.00650 * 18 16 15 43 43 H 1.09010 * 109.46971 * 60.00178 * 18 16 15 44 44 H 0.96993 * 120.00716 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3537 1.1107 0.0000 4 7 3.5877 0.6748 0.0006 5 7 3.6206 -0.6092 0.0069 6 6 4.8390 -1.4225 0.0153 7 6 2.3461 -1.1007 0.0007 8 6 1.9455 -2.5168 0.0010 9 8 1.6281 -3.0588 1.0425 10 7 1.9304 -3.2130 -1.1528 11 6 1.6422 -4.6494 -1.1379 12 1 2.0608 -5.0946 -0.2354 13 6 0.1277 -4.8659 -1.1581 14 6 2.2679 -5.3079 -2.3691 15 7 3.6994 -4.9998 -2.4132 16 6 4.4611 -5.4781 -3.4169 17 8 3.9613 -6.1632 -4.2839 18 6 5.9336 -5.1606 -3.4626 19 16 6.6742 -5.9410 -4.9182 20 6 8.3468 -5.4214 -4.7263 21 1 8.6274 -4.8043 -3.8855 22 6 9.3037 -5.8050 -5.6555 23 7 8.9618 -6.5575 -6.6800 24 14 11.0772 -5.2547 -5.4516 25 1 11.6074 -5.7616 -4.1605 26 1 11.8944 -5.7944 -6.5679 27 1 11.1395 -3.7711 -5.4641 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 2.0450 2.1456 -0.0009 32 1 5.1936 -1.5563 -1.0067 33 1 5.6070 -0.9204 0.6035 34 1 4.6231 -2.3961 0.4552 35 1 2.1103 -2.7632 -1.9932 36 1 -0.2911 -4.4206 -2.0606 37 1 -0.0868 -5.9345 -1.1466 38 1 -0.3181 -4.3967 -0.2810 39 1 2.1302 -6.3877 -2.3130 40 1 1.7863 -4.9264 -3.2695 41 1 4.0991 -4.4515 -1.7199 42 1 6.0710 -4.0809 -3.5193 43 1 6.4154 -5.5414 -2.5620 44 1 9.6304 -6.8253 -7.3297 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688123745.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -0.246328 kcal Electronic energy + Delta-G solvation = -26857.506052 eV Core-core repulsion = 22937.912545 eV Total energy + Delta-G solvation = -3919.593507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.85230 -40.21460 -39.15966 -36.63709 -34.34868 -33.85594 -32.54043 -32.48602 -31.26900 -29.51739 -28.64795 -26.49745 -26.13760 -25.45621 -23.83707 -21.45928 -21.29126 -20.52085 -20.31801 -18.43220 -17.89217 -17.11883 -16.54649 -16.35671 -16.25628 -15.85051 -15.24206 -15.09659 -14.85858 -14.67961 -14.19847 -13.94610 -13.75584 -13.69072 -13.57612 -13.20437 -13.02979 -13.00920 -12.91237 -12.81470 -12.64805 -12.49464 -12.34640 -11.92385 -11.42557 -11.11033 -11.08593 -10.97235 -10.82443 -10.55937 -9.89712 -9.71491 -9.53263 -9.50196 -9.13912 -9.07590 -9.02301 -8.32169 -6.57449 -6.27392 -3.98945 1.28092 1.70872 2.32261 2.34458 2.70059 2.91733 2.96100 3.19177 3.23142 3.25732 3.58422 4.08162 4.14148 4.14835 4.29713 4.66384 4.69313 4.73213 4.76130 4.84703 5.00231 5.03009 5.04759 5.07854 5.24298 5.26147 5.28641 5.34225 5.42680 5.54034 5.60788 5.65262 5.70499 5.76388 5.82079 5.94369 6.01517 6.21170 6.38406 6.39764 6.90325 7.49807 7.53372 7.59383 7.73083 8.28675 8.45016 9.17836 10.79939 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012515 B = 0.002633 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.811893 B =10632.798378 C =12369.501286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.155 4.155 3 C 0.004 3.996 4 N -0.278 5.278 5 N -0.270 5.270 6 C 0.082 3.918 7 C -0.039 4.039 8 C 0.597 3.403 9 O -0.516 6.516 10 N -0.714 5.714 11 C 0.131 3.869 12 H 0.097 0.903 13 C -0.162 4.162 14 C 0.113 3.887 15 N -0.741 5.741 16 C 0.532 3.468 17 O -0.513 6.513 18 C -0.154 4.154 19 S -0.058 6.058 20 C -0.538 4.538 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.282 1.282 27 H -0.274 1.274 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.186 0.814 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.407 0.593 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.396 0.604 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.060 11.714 14.736 25.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.166 4.166 3 C -0.173 4.173 4 N -0.109 5.109 5 N -0.058 5.058 6 C -0.058 4.058 7 C -0.167 4.167 8 C 0.380 3.620 9 O -0.389 6.389 10 N -0.368 5.368 11 C 0.027 3.973 12 H 0.115 0.885 13 C -0.221 4.221 14 C -0.012 4.012 15 N -0.396 5.396 16 C 0.318 3.682 17 O -0.386 6.386 18 C -0.305 4.305 19 S 0.169 5.831 20 C -0.686 4.686 21 H 0.090 0.910 22 C -0.135 4.135 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.203 0.797 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.243 0.757 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.093 0.907 41 H 0.229 0.771 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.784 10.278 13.869 24.077 hybrid contribution 1.303 1.409 1.051 2.188 sum -15.481 11.687 14.920 24.471 Atomic orbital electron populations 1.20123 0.88346 1.02622 1.02431 1.20689 0.96863 0.90695 1.08386 1.23468 0.87684 0.99969 1.06221 1.73187 1.24446 0.93166 1.20095 1.45564 1.05418 1.03763 1.51042 1.22270 0.83833 0.94500 1.05217 1.21272 0.86283 0.94502 1.14663 1.17003 0.77579 0.83476 0.83926 1.90866 1.46898 1.69321 1.31813 1.46182 1.71478 1.09732 1.09376 1.21362 0.96782 0.79531 0.99604 0.88452 1.22116 0.93862 1.03022 1.03063 1.21640 0.81295 1.01128 0.97144 1.45994 1.08677 1.56070 1.28907 1.20336 0.88370 0.78885 0.80598 1.90720 1.74107 1.36573 1.37245 1.23535 0.93930 1.05323 1.07699 1.85425 1.05646 1.66796 1.25244 1.22807 0.93623 1.38235 1.13918 0.90991 1.24989 0.99424 0.94655 0.94441 1.69996 1.34813 1.33506 1.11903 0.86228 0.82325 0.78990 0.77992 1.19921 1.20762 1.19913 0.91105 0.90898 0.91951 0.79697 0.88928 0.87997 0.88911 0.75744 0.91791 0.90796 0.91335 0.89591 0.90679 0.77084 0.89345 0.89215 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.28 36.01 0.37 -0.17 16 2 C -0.16 -1.45 6.29 -104.03 -0.65 -2.11 16 3 C 0.00 0.03 12.00 -17.43 -0.21 -0.17 16 4 N -0.28 -3.06 11.90 30.59 0.36 -2.70 16 5 N -0.27 -2.68 3.75 -63.89 -0.24 -2.92 16 6 C 0.08 0.58 11.21 59.84 0.67 1.25 16 7 C -0.04 -0.39 6.71 -82.06 -0.55 -0.94 16 8 C 0.60 5.88 6.73 -12.64 -0.09 5.79 16 9 O -0.52 -6.69 16.77 5.25 0.09 -6.61 16 10 N -0.71 -5.39 4.51 -54.97 -0.25 -5.64 16 11 C 0.13 0.99 2.69 -67.93 -0.18 0.81 16 12 H 0.10 0.82 7.66 -51.93 -0.40 0.42 16 13 C -0.16 -1.09 9.48 37.16 0.35 -0.73 16 14 C 0.11 1.05 5.23 -4.05 -0.02 1.02 16 15 N -0.74 -8.32 5.39 -60.30 -0.32 -8.64 16 16 C 0.53 8.97 7.85 -10.98 -0.09 8.88 16 17 O -0.51 -10.80 15.86 5.56 0.09 -10.71 16 18 C -0.15 -2.88 6.16 36.01 0.22 -2.66 16 19 S -0.06 -1.51 20.57 -107.50 -2.21 -3.72 16 20 C -0.54 -14.85 9.50 30.94 0.29 -14.56 16 21 H 0.07 1.87 7.80 -52.48 -0.41 1.46 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -25.65 13.22 55.49 0.73 -24.92 16 24 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.43 8.07 -51.93 -0.42 0.01 16 31 H 0.19 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.57 7.66 -51.93 -0.40 0.17 16 35 H 0.41 2.76 8.59 -40.82 -0.35 2.41 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.40 3.50 8.14 -40.82 -0.33 3.17 16 42 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 43 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -36.78 396.28 -7.29 -44.07 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.51 Total: 1.50 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 0.02 Total: -1.60 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.29 Total: -44.83 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: 0.18 Total: -17.32 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.21 Total: -3.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.78 -7.29 -44.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123745.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.827 kcal (2) G-P(sol) polarization free energy of solvation -36.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds