Wall clock time and date at job start Sat Apr 11 2020 05:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35364 * 127.24738 * 2 1 4 4 N 1.35031 * 107.22797 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.88669 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.23262 * 359.97438 * 4 3 2 7 7 C 1.31818 * 110.06943 * 359.71511 * 6 4 3 8 8 C 1.47710 * 126.51766 * 180.31414 * 7 6 4 9 9 O 1.21574 * 120.00016 * 175.08881 * 8 7 6 10 10 N 1.34780 * 119.99731 * 355.08754 * 8 7 6 11 11 C 1.46492 * 120.00626 * 2.79925 * 10 8 7 12 12 C 1.46508 * 119.99782 * 182.80238 * 10 8 7 13 13 C 1.53002 * 109.46944 * 89.99675 * 12 10 8 14 14 N 1.46505 * 109.46580 * 179.97438 * 13 12 10 15 15 C 1.34775 * 119.99788 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00096 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46985 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99828 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99470 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99741 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00520 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47040 * 60.00005 * 23 21 19 25 25 H 1.48495 * 109.47266 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47180 * 300.00151 * 23 21 19 27 27 H 1.09010 * 109.46500 * 90.02604 * 1 2 3 28 28 H 1.08997 * 109.47230 * 330.03181 * 1 2 3 29 29 H 1.08996 * 109.47400 * 210.02619 * 1 2 3 30 30 H 1.07997 * 126.38372 * 359.97010 * 3 2 1 31 31 H 1.09008 * 109.47104 * 89.99483 * 5 4 3 32 32 H 1.09001 * 109.47632 * 209.99915 * 5 4 3 33 33 H 1.09003 * 109.46967 * 330.00287 * 5 4 3 34 34 H 1.08999 * 109.47085 * 83.90381 * 11 10 8 35 35 H 1.08997 * 109.47572 * 203.90497 * 11 10 8 36 36 H 1.09000 * 109.46995 * 323.91096 * 11 10 8 37 37 H 1.08993 * 109.47053 * 209.99787 * 12 10 8 38 38 H 1.09002 * 109.46889 * 330.00099 * 12 10 8 39 39 H 1.08993 * 109.47337 * 299.99938 * 13 12 10 40 40 H 1.09002 * 109.46981 * 60.00480 * 13 12 10 41 41 H 0.96993 * 120.00367 * 0.02562 * 14 13 12 42 42 H 1.08993 * 109.46879 * 299.99640 * 17 15 14 43 43 H 1.09002 * 109.47117 * 59.99986 * 17 15 14 44 44 H 0.96998 * 120.00461 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 0.0006 5 6 4.7937 1.4575 0.0013 6 7 3.5999 -0.6694 0.0015 7 6 2.3634 -1.1263 0.0077 8 6 1.9505 -2.5445 0.0172 9 8 0.7737 -2.8343 0.1124 10 7 2.8784 -3.5172 -0.0798 11 6 4.3007 -3.1702 -0.1327 12 6 2.4647 -4.9216 -0.1322 13 6 2.2488 -5.3356 -1.5893 14 7 1.8357 -6.7402 -1.6417 15 6 1.5878 -7.3258 -2.8300 16 8 1.7063 -6.6899 -3.8559 17 6 1.1623 -8.7705 -2.8840 18 16 0.9070 -9.2602 -4.6077 19 6 0.4314 -10.9417 -4.3808 20 1 0.3747 -11.3571 -3.3855 21 6 0.1287 -11.7317 -5.4810 22 7 0.1973 -11.2252 -6.6940 23 14 -0.3762 -13.5141 -5.2404 24 1 -1.6045 -13.5725 -4.4078 25 1 -0.6436 -14.1356 -6.5622 26 1 0.7186 -14.2511 -4.5597 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 0.8902 0.5133 29 1 -0.3634 -0.8897 0.5142 30 1 2.0220 2.1137 -0.0005 31 1 5.0905 1.6663 1.0292 32 1 5.6030 0.9383 -0.5122 33 1 4.5796 2.3947 -0.5125 34 1 4.6787 -3.0313 0.8801 35 1 4.8529 -3.9740 -0.6196 36 1 4.4286 -2.2471 -0.6980 37 1 3.2402 -5.5457 0.3117 38 1 1.5350 -5.0475 0.4228 39 1 1.4733 -4.7116 -2.0332 40 1 3.1785 -5.2098 -2.1443 41 1 1.7405 -7.2487 -0.8212 42 1 1.9377 -9.3944 -2.4396 43 1 0.2324 -8.8963 -2.3294 44 1 -0.0146 -11.7772 -7.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688309039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:18 Heat of formation + Delta-G solvation = 20.641556 kcal Electronic energy + Delta-G solvation = -26020.622983 eV Core-core repulsion = 22101.935242 eV Total energy + Delta-G solvation = -3918.687741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.07106 -39.92112 -38.96531 -36.23833 -34.48315 -34.21608 -32.39082 -32.31229 -30.50908 -28.85706 -28.14082 -27.30775 -26.25792 -25.43352 -23.66933 -22.02352 -21.11170 -20.40159 -19.46843 -17.81039 -17.57903 -16.90790 -16.84411 -16.48205 -16.20629 -15.62985 -15.32348 -15.00602 -14.76628 -14.37934 -13.99014 -13.88196 -13.77363 -13.71225 -13.42090 -13.23531 -13.11444 -13.04267 -12.83261 -12.70263 -12.51219 -12.20590 -12.14225 -11.98033 -11.31771 -11.00693 -11.00436 -10.90703 -10.73913 -10.21542 -9.79064 -9.61442 -9.39317 -9.14531 -9.02575 -8.88271 -8.83785 -8.19279 -6.45597 -6.17545 -3.88004 1.23248 1.74194 2.01314 2.58627 3.12868 3.16091 3.17111 3.26640 3.30956 3.38158 3.82183 3.89801 4.24344 4.29794 4.37672 4.50070 4.71544 4.77711 4.78385 4.90106 4.96792 5.00768 5.17324 5.19921 5.23163 5.25168 5.37644 5.55867 5.57424 5.67527 5.71134 5.78089 5.86432 5.95041 5.95518 6.17078 6.19176 6.26057 6.41161 6.65860 7.04416 7.48298 7.63094 7.75144 7.94048 8.38996 8.67226 9.27449 10.89827 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001713 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.664777 B =16342.787868 C =16516.620533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.142 4.142 3 C -0.023 4.023 4 N -0.287 5.287 5 C 0.087 3.913 6 N -0.258 5.258 7 C -0.015 4.015 8 C 0.603 3.397 9 O -0.523 6.523 10 N -0.603 5.603 11 C 0.075 3.925 12 C 0.107 3.893 13 C 0.108 3.892 14 N -0.736 5.736 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.152 4.152 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.919 3.081 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.181 0.819 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.299 27.357 19.560 35.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.152 4.152 3 C -0.165 4.165 4 N -0.074 5.074 5 C -0.053 4.053 6 N -0.094 5.094 7 C -0.174 4.174 8 C 0.390 3.610 9 O -0.397 6.397 10 N -0.336 5.336 11 C -0.068 4.068 12 C -0.017 4.017 13 C -0.018 4.018 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.303 4.303 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.200 1.200 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.103 0.897 30 H 0.198 0.802 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.232 0.768 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.087 27.990 17.689 34.917 hybrid contribution -0.982 -1.680 1.699 2.583 sum 10.104 26.310 19.388 34.208 Atomic orbital electron populations 1.20220 0.87929 1.03208 1.02633 1.20400 0.97592 0.90357 1.06859 1.22632 0.83633 1.00576 1.09695 1.45416 1.07119 1.03993 1.50913 1.22186 0.84793 0.93895 1.04471 1.73672 1.22802 0.93404 1.19553 1.21746 0.89574 0.94771 1.11292 1.16987 0.85050 0.82685 0.76319 1.90797 1.16795 1.82377 1.49767 1.47522 1.07512 1.05754 1.72791 1.22157 0.79418 1.02804 1.02426 1.21626 1.02543 0.80882 0.96616 1.21570 1.00989 0.82864 0.96367 1.45830 1.72236 1.11961 1.09138 1.20302 0.76174 0.88844 0.82814 1.90705 1.50011 1.65009 1.33359 1.23527 1.04087 0.94276 1.08432 1.85410 1.88804 1.12205 0.96977 1.22835 1.53439 0.96386 0.95721 0.90952 1.24990 0.94964 0.99195 0.94442 1.70010 1.45664 1.36723 0.97931 0.86223 0.79072 0.82634 0.77553 1.19934 1.20836 1.19966 0.91276 0.91943 0.89712 0.80171 0.89667 0.88441 0.88592 0.92537 0.91116 0.88637 0.89568 0.88829 0.91211 0.91562 0.76777 0.89171 0.89111 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.98 36.01 0.36 -0.38 16 2 C -0.14 -1.41 6.25 -104.40 -0.65 -2.06 16 3 C -0.02 -0.16 11.40 -17.17 -0.20 -0.35 16 4 N -0.29 -1.95 3.70 -68.13 -0.25 -2.20 16 5 C 0.09 0.16 11.31 59.84 0.68 0.84 16 6 N -0.26 -2.44 8.49 33.42 0.28 -2.15 16 7 C -0.01 -0.17 6.83 -82.76 -0.57 -0.73 16 8 C 0.60 7.82 7.68 -12.39 -0.10 7.73 16 9 O -0.52 -8.12 14.64 5.30 0.08 -8.04 16 10 N -0.60 -6.50 2.87 -182.75 -0.53 -7.02 16 11 C 0.08 0.62 9.61 59.84 0.58 1.19 16 12 C 0.11 1.08 5.51 -4.04 -0.02 1.06 16 13 C 0.11 1.44 6.00 -4.04 -0.02 1.41 16 14 N -0.74 -10.49 5.56 -60.29 -0.33 -10.83 16 15 C 0.53 10.46 7.85 -10.99 -0.09 10.38 16 16 O -0.52 -12.39 15.86 5.56 0.09 -12.30 16 17 C -0.15 -3.17 6.16 36.01 0.22 -2.95 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.90 16 19 C -0.54 -15.51 9.50 30.94 0.29 -15.22 16 20 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 23 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.94 6.62 -51.93 -0.34 0.59 16 30 H 0.18 0.56 8.06 -52.49 -0.42 0.14 16 31 H 0.08 0.06 8.14 -51.92 -0.42 -0.37 16 32 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 -0.04 8.13 -51.93 -0.42 -0.46 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.49 8.03 -51.93 -0.42 0.08 16 36 H 0.10 0.84 5.37 -51.93 -0.28 0.56 16 37 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.09 1.01 7.38 -51.93 -0.38 0.63 16 39 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.40 4.29 8.47 -40.82 -0.35 3.94 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 44 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 388.88 15.07 5.86 5.86 Total: -1.00 -39.58 388.88 -7.30 -46.87 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -6.38 Total: -0.07 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: 0.39 Total: 2.94 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.09 Total: -48.03 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.17 Total: -20.35 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.58 -7.30 -46.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688309039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.514 kcal (2) G-P(sol) polarization free energy of solvation -39.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds