Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.35364 * 127.24738 * 2 1 4 4 N 1.35031 * 107.22797 * 179.97438 * 3 2 1 5 5 C 1.46496 * 124.88669 * 180.02562 * 4 3 2 6 6 N 1.28467 * 110.23262 * 359.97438 * 4 3 2 7 7 C 1.31818 * 110.06943 * 359.71511 * 6 4 3 8 8 C 1.47710 * 126.51766 * 180.31414 * 7 6 4 9 9 O 1.21574 * 120.00016 * 175.08881 * 8 7 6 10 10 N 1.34780 * 119.99731 * 355.08754 * 8 7 6 11 11 C 1.46492 * 120.00626 * 2.79925 * 10 8 7 12 12 C 1.46508 * 119.99782 * 182.80238 * 10 8 7 13 13 C 1.53002 * 109.46944 * 89.99675 * 12 10 8 14 14 N 1.46505 * 109.46580 * 179.97438 * 13 12 10 15 15 C 1.34775 * 119.99788 * 180.02562 * 14 13 12 16 16 O 1.21281 * 120.00227 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00096 * 180.02562 * 15 14 13 18 18 S 1.81005 * 109.46985 * 179.97438 * 17 15 14 19 19 C 1.76207 * 99.99828 * 179.97438 * 18 17 15 20 20 H 1.08001 * 119.99470 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99741 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00520 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99745 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47040 * 60.00005 * 23 21 19 25 25 H 1.48495 * 109.47266 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47180 * 300.00151 * 23 21 19 27 27 H 1.09010 * 109.46500 * 90.02604 * 1 2 3 28 28 H 1.08997 * 109.47230 * 330.03181 * 1 2 3 29 29 H 1.08996 * 109.47400 * 210.02619 * 1 2 3 30 30 H 1.07997 * 126.38372 * 359.97010 * 3 2 1 31 31 H 1.09008 * 109.47104 * 89.99483 * 5 4 3 32 32 H 1.09001 * 109.47632 * 209.99915 * 5 4 3 33 33 H 1.09003 * 109.46967 * 330.00287 * 5 4 3 34 34 H 1.08999 * 109.47085 * 83.90381 * 11 10 8 35 35 H 1.08997 * 109.47572 * 203.90497 * 11 10 8 36 36 H 1.09000 * 109.46995 * 323.91096 * 11 10 8 37 37 H 1.08993 * 109.47053 * 209.99787 * 12 10 8 38 38 H 1.09002 * 109.46889 * 330.00099 * 12 10 8 39 39 H 1.08993 * 109.47337 * 299.99938 * 13 12 10 40 40 H 1.09002 * 109.46981 * 60.00480 * 13 12 10 41 41 H 0.96993 * 120.00367 * 0.02562 * 14 13 12 42 42 H 1.08993 * 109.46879 * 299.99640 * 17 15 14 43 43 H 1.09002 * 109.47117 * 59.99986 * 17 15 14 44 44 H 0.96998 * 120.00461 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3264 1.0775 0.0000 4 7 3.5951 0.6153 0.0006 5 6 4.7937 1.4575 0.0013 6 7 3.5999 -0.6694 0.0015 7 6 2.3634 -1.1263 0.0077 8 6 1.9505 -2.5445 0.0172 9 8 0.7737 -2.8343 0.1124 10 7 2.8784 -3.5172 -0.0798 11 6 4.3007 -3.1702 -0.1327 12 6 2.4647 -4.9216 -0.1322 13 6 2.2488 -5.3356 -1.5893 14 7 1.8357 -6.7402 -1.6417 15 6 1.5878 -7.3258 -2.8300 16 8 1.7063 -6.6899 -3.8559 17 6 1.1623 -8.7705 -2.8840 18 16 0.9070 -9.2602 -4.6077 19 6 0.4314 -10.9417 -4.3808 20 1 0.3747 -11.3571 -3.3855 21 6 0.1287 -11.7317 -5.4810 22 7 0.1973 -11.2252 -6.6940 23 14 -0.3762 -13.5141 -5.2404 24 1 -1.6045 -13.5725 -4.4078 25 1 -0.6436 -14.1356 -6.5622 26 1 0.7186 -14.2511 -4.5597 27 1 -0.3633 -0.0005 -1.0278 28 1 -0.3633 0.8902 0.5133 29 1 -0.3634 -0.8897 0.5142 30 1 2.0220 2.1137 -0.0005 31 1 5.0905 1.6663 1.0292 32 1 5.6030 0.9383 -0.5122 33 1 4.5796 2.3947 -0.5125 34 1 4.6787 -3.0313 0.8801 35 1 4.8529 -3.9740 -0.6196 36 1 4.4286 -2.2471 -0.6980 37 1 3.2402 -5.5457 0.3117 38 1 1.5350 -5.0475 0.4228 39 1 1.4733 -4.7116 -2.0332 40 1 3.1785 -5.2098 -2.1443 41 1 1.7405 -7.2487 -0.8212 42 1 1.9377 -9.3944 -2.4396 43 1 0.2324 -8.8963 -2.3294 44 1 -0.0146 -11.7772 -7.4629 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688309039.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -8.879131 kcal Electronic energy + Delta-G solvation = -26021.903096 eV Core-core repulsion = 22101.935242 eV Total energy + Delta-G solvation = -3919.967854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.67164 -40.95491 -40.39561 -37.26392 -35.67913 -34.83841 -34.57833 -33.00127 -31.80692 -29.88140 -28.89319 -28.02283 -27.67928 -26.97348 -24.59364 -22.75983 -21.94771 -21.66465 -20.33603 -19.80184 -18.26554 -17.95068 -17.67904 -17.52766 -17.20381 -16.87219 -16.74175 -16.69213 -16.07661 -15.65148 -15.36461 -14.78293 -14.75039 -14.47492 -14.41068 -14.23992 -14.14910 -13.90303 -13.67251 -13.54497 -13.29886 -13.24333 -13.16694 -13.11413 -12.86146 -12.79920 -12.62028 -12.39405 -11.75231 -11.61895 -11.18033 -11.12257 -10.99107 -10.28071 -10.21820 -10.20781 -9.92299 -9.62083 -8.67074 -8.33745 -6.12542 0.47779 1.13409 1.24248 1.43474 1.44904 1.52769 1.57532 1.59839 1.87011 2.27256 2.27993 2.44057 3.00186 3.26627 3.32937 3.74438 3.79014 3.89967 3.99534 4.02588 4.30082 4.31400 4.35190 4.37075 4.44461 4.47792 4.50951 4.58377 4.68648 4.69996 4.73540 4.85054 4.87308 4.95219 5.07979 5.18526 5.28369 5.42292 5.46266 5.52988 5.91988 6.20274 6.20418 6.45772 6.81372 7.07092 7.07357 7.20494 8.75333 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.028314 B = 0.001713 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.664777 B =16342.787868 C =16516.620533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.176 4.176 3 C -0.005 4.005 4 N -0.280 5.280 5 C 0.075 3.925 6 N -0.262 5.262 7 C -0.051 4.051 8 C 0.593 3.407 9 O -0.563 6.563 10 N -0.602 5.602 11 C 0.076 3.924 12 C 0.115 3.885 13 C 0.114 3.886 14 N -0.708 5.708 15 C 0.534 3.466 16 O -0.568 6.568 17 C -0.127 4.127 18 S -0.155 6.155 19 C -0.547 4.547 20 H 0.085 0.915 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.000 3.000 24 H -0.263 1.263 25 H -0.279 1.279 26 H -0.261 1.261 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.222 0.778 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.125 0.875 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.124 0.876 38 H 0.088 0.912 39 H 0.036 0.964 40 H 0.065 0.935 41 H 0.420 0.580 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.738 27.915 22.013 37.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.186 4.186 3 C -0.148 4.148 4 N -0.068 5.068 5 C -0.063 4.063 6 N -0.100 5.100 7 C -0.208 4.208 8 C 0.381 3.619 9 O -0.441 6.441 10 N -0.334 5.334 11 C -0.066 4.066 12 C -0.008 4.008 13 C -0.011 4.011 14 N -0.363 5.363 15 C 0.320 3.680 16 O -0.446 6.446 17 C -0.279 4.279 18 S 0.072 5.928 19 C -0.694 4.694 20 H 0.103 0.897 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.822 3.178 24 H -0.187 1.187 25 H -0.204 1.204 26 H -0.185 1.185 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.075 0.925 30 H 0.239 0.761 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.143 0.857 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.106 0.894 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.258 0.742 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.576 28.553 20.213 37.175 hybrid contribution -1.320 -1.654 1.014 2.347 sum 11.256 26.898 21.227 36.067 Atomic orbital electron populations 1.20132 0.88130 1.03096 1.02083 1.20680 0.98072 0.91154 1.08742 1.23168 0.83020 1.01538 1.07060 1.45962 1.08620 1.03556 1.48622 1.22643 0.83205 0.94259 1.06172 1.73614 1.21780 0.94903 1.19751 1.21701 0.90888 0.94395 1.13860 1.17401 0.84861 0.83879 0.75787 1.90758 1.18362 1.83173 1.51790 1.47655 1.08335 1.05567 1.71845 1.22272 0.77922 1.03137 1.03312 1.21607 1.03776 0.81350 0.94102 1.21568 0.99600 0.81382 0.98590 1.45508 1.70032 1.12369 1.08383 1.20147 0.76015 0.88354 0.83521 1.90695 1.52581 1.65869 1.35469 1.23360 1.05985 0.95343 1.03177 1.85622 1.89312 1.13526 1.04303 1.23182 1.53458 0.96298 0.96501 0.89733 1.26156 0.94605 1.04571 0.93907 1.70184 1.46820 1.38796 0.99042 0.84981 0.79186 0.75877 0.77794 1.18711 1.20412 1.18511 0.92063 0.89269 0.92522 0.76100 0.87915 0.88041 0.85653 0.91260 0.89544 0.89255 0.85780 0.89384 0.94511 0.91662 0.74216 0.86573 0.87121 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.98 71.24 0.71 -0.74 16 2 C -0.18 -3.47 6.25 -19.72 -0.12 -3.59 16 3 C 0.00 -0.05 11.40 83.54 0.95 0.90 16 4 N -0.28 -3.18 3.70 -369.45 -1.37 -4.55 16 5 C 0.08 0.04 11.31 127.77 1.44 1.49 16 6 N -0.26 -4.72 8.49 -48.18 -0.41 -5.13 16 7 C -0.05 -1.19 6.83 42.45 0.29 -0.90 16 8 C 0.59 16.05 7.68 86.75 0.67 16.71 16 9 O -0.56 -18.73 14.64 -3.95 -0.06 -18.79 16 10 N -0.60 -12.83 2.87 -850.35 -2.44 -15.27 16 11 C 0.08 1.15 9.61 127.77 1.23 2.37 16 12 C 0.11 2.21 5.51 86.38 0.48 2.69 16 13 C 0.11 3.03 6.00 86.38 0.52 3.55 16 14 N -0.71 -19.33 5.56 -463.05 -2.57 -21.90 16 15 C 0.53 20.89 7.85 87.66 0.69 21.58 16 16 O -0.57 -28.10 15.86 -3.03 -0.05 -28.15 16 17 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 18 S -0.15 -8.83 20.57 -56.49 -1.16 -9.99 16 19 C -0.55 -31.71 9.50 67.95 0.65 -31.07 16 20 H 0.08 4.52 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.96 13.22 21.65 0.29 -56.67 16 23 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 27 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.38 6.62 -2.39 -0.02 1.36 16 30 H 0.22 0.47 8.06 -2.91 -0.02 0.44 16 31 H 0.10 -0.23 8.14 -2.38 -0.02 -0.25 16 32 H 0.10 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.13 -0.62 8.13 -2.39 -0.02 -0.64 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.03 8.03 -2.39 -0.02 1.01 16 36 H 0.09 1.51 5.37 -2.39 -0.01 1.50 16 37 H 0.12 1.48 8.07 -2.39 -0.02 1.46 16 38 H 0.09 1.85 7.38 -2.39 -0.02 1.83 16 39 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.42 7.95 8.47 -92.71 -0.79 7.16 16 42 H 0.12 4.14 8.14 -2.40 -0.02 4.12 16 43 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -91.89 388.88 2.90 -88.99 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.24 Total: 15.87 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 8.40 Total: 9.40 kcal Atomic # 7 Polarization: -97.02 SS G_CDS: -6.50 Total: -103.52 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -0.11 Total: -46.94 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.83 SS G_CDS: -1.16 Total: -9.99 kcal Total: -91.89 2.90 -88.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688309039.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.114 kcal (2) G-P(sol) polarization free energy of solvation -91.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds