Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.50701 * 126.10462 * 180.14213 * 4 3 2 6 6 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 7 7 C 1.46763 * 126.84575 * 179.80041 * 6 4 3 8 8 O 1.21682 * 120.00133 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00343 * 179.97438 * 7 6 4 10 10 C 1.46492 * 120.00341 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47358 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47332 * 180.02562 * 11 10 9 13 13 C 1.46502 * 119.99952 * 269.99694 * 12 11 10 14 14 C 1.34776 * 120.00026 * 90.00208 * 12 11 10 15 15 O 1.21286 * 120.00037 * 359.97438 * 14 12 11 16 16 C 1.50694 * 120.00061 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.47238 * 179.97438 * 16 14 12 18 18 C 1.76202 * 99.99969 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99675 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47113 * 90.00248 * 22 20 18 24 24 H 1.48501 * 109.47444 * 210.00421 * 22 20 18 25 25 H 1.48505 * 109.47401 * 330.00343 * 22 20 18 26 26 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 27 27 H 0.97005 * 126.46977 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 31 31 H 1.08999 * 109.46957 * 270.29896 * 5 4 3 32 32 H 1.08999 * 109.47418 * 30.29959 * 5 4 3 33 33 H 1.09004 * 109.47031 * 150.30251 * 5 4 3 34 34 H 0.97005 * 119.99550 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47479 * 299.99917 * 10 9 7 36 36 H 1.09001 * 109.47374 * 60.00321 * 10 9 7 37 37 H 1.09005 * 109.47304 * 300.00547 * 11 10 9 38 38 H 1.09000 * 109.47238 * 60.00199 * 11 10 9 39 39 H 1.09000 * 109.46475 * 89.99825 * 13 12 11 40 40 H 1.09000 * 109.47060 * 210.00170 * 13 12 11 41 41 H 1.09001 * 109.46912 * 330.00666 * 13 12 11 42 42 H 1.09005 * 109.47113 * 299.99647 * 16 14 12 43 43 H 1.09000 * 109.47154 * 59.99966 * 16 14 12 44 44 H 0.97008 * 119.99681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 4.7335 1.6360 0.0069 6 6 3.5976 -0.6608 -0.0041 7 6 4.8028 -1.4982 -0.0081 8 8 5.9038 -0.9800 -0.0056 9 7 4.6903 -2.8413 -0.0145 10 6 5.8934 -3.6772 -0.0190 11 6 5.4892 -5.1528 -0.0253 12 7 6.6923 -5.9887 -0.0292 13 6 7.2935 -6.4013 -1.2999 14 6 7.2460 -6.3783 1.1362 15 8 6.7485 -6.0365 2.1881 16 6 8.4838 -7.2377 1.1321 17 16 8.9801 -7.5889 2.8370 18 6 10.4072 -8.5795 2.5424 19 1 10.7175 -8.7918 1.5300 20 6 11.1325 -9.0868 3.6115 21 7 10.7540 -8.8284 4.8454 22 14 12.6451 -10.1375 3.2992 23 1 13.8452 -9.2664 3.2197 24 1 12.8112 -11.1089 4.4101 25 1 12.4815 -10.8727 2.0193 26 7 2.2865 -1.0961 -0.0060 27 1 1.9849 -2.0180 -0.0106 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5091 31 1 5.0185 1.8658 -1.0198 32 1 4.4697 2.5576 0.5257 33 1 5.5695 1.1580 0.5177 34 1 3.8126 -3.2544 -0.0161 35 1 6.4846 -3.4583 -0.9082 36 1 6.4853 -3.4669 0.8718 37 1 4.8981 -5.3715 0.8641 38 1 4.8970 -5.3636 -0.9158 39 1 8.0289 -5.6595 -1.6115 40 1 7.7824 -7.3672 -1.1739 41 1 6.5163 -6.4837 -2.0597 42 1 8.2747 -8.1737 0.6141 43 1 9.2898 -6.7115 0.6206 44 1 11.2608 -9.1834 5.5926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688379412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -18.394227 kcal Electronic energy + Delta-G solvation = -25919.704530 eV Core-core repulsion = 21999.324071 eV Total energy + Delta-G solvation = -3920.380459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.67402 -39.90044 -39.29243 -36.11793 -34.86572 -33.67712 -32.64416 -32.45448 -30.75042 -29.51604 -28.56074 -27.04869 -26.18482 -25.49401 -23.44329 -22.10787 -21.35222 -20.36556 -19.40704 -18.68824 -17.73791 -16.82290 -16.59969 -16.37297 -16.22918 -15.60765 -15.34845 -15.21878 -14.82622 -14.40255 -14.21700 -13.95816 -13.88742 -13.42898 -13.39227 -13.30353 -13.02648 -12.91662 -12.75204 -12.60578 -12.50164 -12.38925 -12.31829 -11.91875 -11.55582 -11.08450 -11.04974 -10.79324 -10.78029 -10.38073 -10.20884 -9.84055 -9.51357 -9.48335 -9.09026 -8.75488 -8.71913 -8.26865 -6.53736 -6.24147 -3.95284 0.90007 2.35862 2.40746 2.51601 2.92495 3.00001 3.05236 3.20841 3.25548 3.29053 3.56853 3.82859 4.17557 4.34001 4.48807 4.57599 4.69935 4.72122 4.92907 4.98771 4.99057 5.00143 5.11114 5.16532 5.29619 5.33700 5.35837 5.49752 5.57521 5.60898 5.69048 5.71197 5.75570 5.81055 5.84122 5.97864 6.07762 6.28084 6.46634 6.74497 7.03096 7.35247 7.54413 7.57071 7.81539 8.32515 8.41620 9.21173 10.83253 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.001786 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.397942 B =15672.885518 C =15869.215131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.243 3.757 3 N -0.495 5.495 4 C 0.103 3.897 5 C -0.079 4.079 6 C -0.096 4.096 7 C 0.596 3.404 8 O -0.516 6.516 9 N -0.727 5.727 10 C 0.104 3.896 11 C 0.109 3.891 12 N -0.622 5.622 13 C 0.079 3.921 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.150 4.150 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.276 1.276 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.554 5.554 27 H 0.420 0.580 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.393 0.607 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.488 13.159 -16.072 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 N -0.217 5.217 4 C -0.031 4.031 5 C -0.137 4.137 6 C -0.211 4.211 7 C 0.383 3.617 8 O -0.391 6.391 9 N -0.378 5.378 10 C -0.021 4.021 11 C -0.015 4.015 12 N -0.359 5.359 13 C -0.064 4.064 14 C 0.322 3.678 15 O -0.385 6.385 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.160 5.160 27 H 0.259 0.741 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.226 0.774 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.109 0.891 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.589 14.788 -14.312 29.111 hybrid contribution 1.195 -2.678 -1.514 3.300 sum -19.394 12.110 -15.826 27.807 Atomic orbital electron populations 1.20330 0.84079 1.04631 1.04240 1.23446 0.95867 0.81445 1.01295 1.70123 1.01673 1.28242 1.21633 1.21118 0.93180 0.90299 0.98503 1.20329 0.93017 0.97197 1.03146 1.20853 0.83612 0.95479 1.21137 1.16766 0.87072 0.81233 0.76665 1.90857 1.25821 1.72842 1.49619 1.45706 1.09879 1.05831 1.76431 1.21830 0.86980 0.89593 1.03655 1.21441 0.88010 0.88513 1.03558 1.47738 1.28884 1.52377 1.06913 1.21834 0.98647 1.01149 0.84752 1.20441 0.84951 0.79725 0.82710 1.90710 1.62257 1.55069 1.30423 1.23561 0.96959 1.01034 1.08527 1.85415 1.34263 1.66580 0.97218 1.22850 1.13201 1.36836 0.95506 0.90896 1.24996 0.97961 0.96192 0.94424 1.70017 1.39007 1.43095 0.98101 0.86163 0.81650 0.79588 0.78064 1.20232 1.20740 1.19696 1.43165 1.05998 1.10120 1.56682 0.74106 0.89410 0.90323 0.88566 0.90629 0.90920 0.89082 0.77408 0.90913 0.90200 0.89226 0.90302 0.92490 0.90299 0.91308 0.89114 0.89062 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.24 1.88 8.12 -155.61 -1.26 0.61 16 3 N -0.50 -5.49 11.20 -6.85 -0.08 -5.57 16 4 C 0.10 1.20 7.15 -82.52 -0.59 0.61 16 5 C -0.08 -0.83 9.88 36.01 0.36 -0.48 16 6 C -0.10 -1.00 7.07 -82.15 -0.58 -1.58 16 7 C 0.60 7.02 7.79 -12.81 -0.10 6.92 16 8 O -0.52 -7.88 14.82 5.21 0.08 -7.81 16 9 N -0.73 -6.61 5.55 -61.60 -0.34 -6.95 16 10 C 0.10 1.14 6.00 -4.05 -0.02 1.12 16 11 C 0.11 1.09 5.56 -4.04 -0.02 1.07 16 12 N -0.62 -7.92 2.87 -181.57 -0.52 -8.44 16 13 C 0.08 0.73 10.29 59.85 0.62 1.34 16 14 C 0.53 9.65 7.69 -10.99 -0.08 9.57 16 15 O -0.51 -11.19 15.44 5.55 0.09 -11.10 16 16 C -0.15 -2.96 4.71 36.00 0.17 -2.79 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 19 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 20 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 21 N -0.87 -26.02 13.22 55.49 0.73 -25.29 16 22 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 N -0.55 -3.76 6.07 -7.02 -0.04 -3.81 16 27 H 0.42 1.28 8.32 -40.82 -0.34 0.94 16 28 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.06 6.48 -51.93 -0.34 0.73 16 34 H 0.39 2.20 7.72 -40.82 -0.31 1.88 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 38 H 0.08 0.51 7.89 -51.93 -0.41 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.74 6.44 -51.93 -0.33 0.41 16 41 H 0.07 0.44 7.89 -51.93 -0.41 0.03 16 42 H 0.09 1.63 7.40 -51.91 -0.38 1.25 16 43 H 0.09 1.68 8.11 -51.92 -0.42 1.26 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 389.31 15.07 5.87 5.87 Total: -1.00 -38.94 389.31 -8.66 -47.60 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -6.26 Total: -0.59 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -0.95 Total: 3.71 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.25 Total: -50.05 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.16 Total: -18.91 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.94 -8.66 -47.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688379412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.210 kcal (2) G-P(sol) polarization free energy of solvation -38.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds