Wall clock time and date at job start Sat Apr 11 2020 05:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30858 * 125.41899 * 2 1 4 4 C 1.33314 * 109.68397 * 179.86687 * 3 2 1 5 5 C 1.50701 * 126.10462 * 180.14213 * 4 3 2 6 6 C 1.36657 * 107.78768 * 0.39373 * 4 3 2 7 7 C 1.46763 * 126.84575 * 179.80041 * 6 4 3 8 8 O 1.21682 * 120.00133 * 359.97438 * 7 6 4 9 9 N 1.34782 * 120.00343 * 179.97438 * 7 6 4 10 10 C 1.46492 * 120.00341 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47358 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.47332 * 180.02562 * 11 10 9 13 13 C 1.46502 * 119.99952 * 269.99694 * 12 11 10 14 14 C 1.34776 * 120.00026 * 90.00208 * 12 11 10 15 15 O 1.21286 * 120.00037 * 359.97438 * 14 12 11 16 16 C 1.50694 * 120.00061 * 180.02562 * 14 12 11 17 17 S 1.81001 * 109.47238 * 179.97438 * 16 14 12 18 18 C 1.76202 * 99.99969 * 179.97438 * 17 16 14 19 19 H 1.07997 * 119.99904 * 359.97438 * 18 17 16 20 20 C 1.38802 * 119.99675 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00137 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99662 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47113 * 90.00248 * 22 20 18 24 24 H 1.48501 * 109.47444 * 210.00421 * 22 20 18 25 25 H 1.48505 * 109.47401 * 330.00343 * 22 20 18 26 26 N 1.34497 * 125.41767 * 180.31164 * 2 1 3 27 27 H 0.97005 * 126.46977 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47152 * 269.69073 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69173 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69154 * 1 2 3 31 31 H 1.08999 * 109.46957 * 270.29896 * 5 4 3 32 32 H 1.08999 * 109.47418 * 30.29959 * 5 4 3 33 33 H 1.09004 * 109.47031 * 150.30251 * 5 4 3 34 34 H 0.97005 * 119.99550 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.47479 * 299.99917 * 10 9 7 36 36 H 1.09001 * 109.47374 * 60.00321 * 10 9 7 37 37 H 1.09005 * 109.47304 * 300.00547 * 11 10 9 38 38 H 1.09000 * 109.47238 * 60.00199 * 11 10 9 39 39 H 1.09000 * 109.46475 * 89.99825 * 13 12 11 40 40 H 1.09000 * 109.47060 * 210.00170 * 13 12 11 41 41 H 1.09001 * 109.46912 * 330.00666 * 13 12 11 42 42 H 1.09005 * 109.47113 * 299.99647 * 16 14 12 43 43 H 1.09000 * 109.47154 * 59.99966 * 16 14 12 44 44 H 0.97008 * 119.99681 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0029 5 6 4.7335 1.6360 0.0069 6 6 3.5976 -0.6608 -0.0041 7 6 4.8028 -1.4982 -0.0081 8 8 5.9038 -0.9800 -0.0056 9 7 4.6903 -2.8413 -0.0145 10 6 5.8934 -3.6772 -0.0190 11 6 5.4892 -5.1528 -0.0253 12 7 6.6923 -5.9887 -0.0292 13 6 7.2935 -6.4013 -1.2999 14 6 7.2460 -6.3783 1.1362 15 8 6.7485 -6.0365 2.1881 16 6 8.4838 -7.2377 1.1321 17 16 8.9801 -7.5889 2.8370 18 6 10.4072 -8.5795 2.5424 19 1 10.7175 -8.7918 1.5300 20 6 11.1325 -9.0868 3.6115 21 7 10.7540 -8.8284 4.8454 22 14 12.6451 -10.1375 3.2992 23 1 13.8452 -9.2664 3.2197 24 1 12.8112 -11.1089 4.4101 25 1 12.4815 -10.8727 2.0193 26 7 2.2865 -1.0961 -0.0060 27 1 1.9849 -2.0180 -0.0106 28 1 -0.3633 -0.0055 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5091 31 1 5.0185 1.8658 -1.0198 32 1 4.4697 2.5576 0.5257 33 1 5.5695 1.1580 0.5177 34 1 3.8126 -3.2544 -0.0161 35 1 6.4846 -3.4583 -0.9082 36 1 6.4853 -3.4669 0.8718 37 1 4.8981 -5.3715 0.8641 38 1 4.8970 -5.3636 -0.9158 39 1 8.0289 -5.6595 -1.6115 40 1 7.7824 -7.3672 -1.1739 41 1 6.5163 -6.4837 -2.0597 42 1 8.2747 -8.1737 0.6141 43 1 9.2898 -6.7115 0.6206 44 1 11.2608 -9.1834 5.5926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001688379412.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:20 Heat of formation + Delta-G solvation = -48.193799 kcal Electronic energy + Delta-G solvation = -25920.996737 eV Core-core repulsion = 21999.324071 eV Total energy + Delta-G solvation = -3921.672666 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.37006 -41.04735 -40.36918 -37.24333 -35.88332 -34.59473 -34.40821 -33.29534 -31.89356 -30.10712 -29.78581 -27.85005 -27.70293 -27.00704 -24.40877 -22.89358 -22.06224 -21.25096 -20.59473 -19.67031 -19.39733 -18.12923 -17.58051 -17.23063 -17.03199 -16.89025 -16.71725 -16.53311 -16.12065 -15.78075 -15.24049 -14.91612 -14.87765 -14.48626 -14.33883 -14.28576 -14.06154 -13.98773 -13.59327 -13.31658 -13.27377 -13.24298 -13.16593 -13.10255 -13.06981 -12.89797 -12.65008 -12.39963 -11.72930 -11.63886 -11.15241 -11.12669 -11.06683 -10.93814 -10.40887 -10.28100 -9.83435 -9.45424 -8.68633 -8.35642 -6.14053 0.13138 1.21910 1.41027 1.41945 1.49884 1.55264 1.68507 1.71237 1.88867 2.13496 2.25860 2.33049 2.98702 3.24838 3.27950 3.65695 3.68479 3.76831 3.96970 3.99205 4.09416 4.19643 4.26976 4.38870 4.47946 4.50578 4.65533 4.68233 4.70151 4.73454 4.77109 4.83788 4.93334 4.96256 5.00912 5.09748 5.17112 5.40881 5.49677 5.50753 6.16889 6.19388 6.19872 6.33826 6.85016 6.96295 7.05668 7.08222 8.73549 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023555 B = 0.001786 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.397942 B =15672.885518 C =15869.215131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.255 3.745 3 N -0.531 5.531 4 C 0.080 3.920 5 C -0.076 4.076 6 C -0.108 4.108 7 C 0.594 3.406 8 O -0.560 6.560 9 N -0.708 5.708 10 C 0.114 3.886 11 C 0.112 3.888 12 N -0.608 5.608 13 C 0.069 3.931 14 C 0.531 3.469 15 O -0.561 6.561 16 C -0.125 4.125 17 S -0.156 6.156 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.911 5.911 22 Si 0.999 3.001 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.256 1.256 26 N -0.537 5.537 27 H 0.439 0.561 28 H 0.101 0.899 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.413 0.587 35 H 0.077 0.923 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.132 0.868 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.106 0.894 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.062 11.927 -19.070 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.009 4.009 3 N -0.253 5.253 4 C -0.054 4.054 5 C -0.134 4.134 6 C -0.224 4.224 7 C 0.382 3.618 8 O -0.438 6.438 9 N -0.361 5.361 10 C -0.012 4.012 11 C -0.011 4.011 12 N -0.342 5.342 13 C -0.073 4.073 14 C 0.318 3.682 15 O -0.439 6.439 16 C -0.276 4.276 17 S 0.072 5.928 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.180 1.180 26 N -0.144 5.144 27 H 0.282 0.718 28 H 0.119 0.881 29 H 0.128 0.872 30 H 0.116 0.884 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.249 0.751 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.096 0.904 38 H 0.150 0.850 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.223 13.515 -17.378 31.281 hybrid contribution 1.530 -2.209 -0.692 2.775 sum -20.694 11.305 -18.069 29.708 Atomic orbital electron populations 1.20574 0.80716 1.06279 1.05556 1.24286 0.97426 0.80769 0.98449 1.70119 1.01638 1.30084 1.23455 1.21347 0.93795 0.91102 0.99190 1.20258 0.92533 0.97302 1.03265 1.20559 0.84508 0.94991 1.22309 1.16979 0.86930 0.81882 0.76015 1.90834 1.27517 1.73748 1.51719 1.45461 1.10437 1.04902 1.75312 1.21605 0.87293 0.90558 1.01715 1.21638 0.86985 0.86975 1.05512 1.47699 1.28951 1.51133 1.06456 1.22185 1.00287 1.01234 0.83575 1.20196 0.84550 0.79690 0.83733 1.90694 1.63501 1.57083 1.32597 1.23386 0.98385 1.02763 1.03031 1.85596 1.35234 1.67226 1.04783 1.23196 1.13234 1.36700 0.96170 0.89800 1.26140 1.01534 0.97539 0.93993 1.70188 1.40748 1.44570 0.99284 0.84950 0.76896 0.77578 0.78535 1.19461 1.20306 1.17985 1.43042 1.04444 1.11156 1.55803 0.71836 0.88098 0.87221 0.88352 0.90178 0.90286 0.90833 0.75057 0.90432 0.94680 0.90440 0.85035 0.91572 0.90414 0.87232 0.86952 0.87618 0.92017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.51 71.24 0.75 0.49 16 2 C 0.26 3.43 8.12 138.20 1.12 4.55 16 3 N -0.53 -11.45 11.20 -175.57 -1.97 -13.42 16 4 C 0.08 1.89 7.15 41.96 0.30 2.19 16 5 C -0.08 -1.69 9.88 71.24 0.70 -0.99 16 6 C -0.11 -2.20 7.07 40.01 0.28 -1.92 16 7 C 0.59 14.03 7.79 86.47 0.67 14.70 16 8 O -0.56 -17.88 14.82 -4.29 -0.06 -17.94 16 9 N -0.71 -12.01 5.55 -467.01 -2.59 -14.60 16 10 C 0.11 2.40 6.00 86.38 0.52 2.92 16 11 C 0.11 1.95 5.56 86.38 0.48 2.44 16 12 N -0.61 -14.12 2.87 -846.74 -2.43 -16.56 16 13 C 0.07 1.00 10.29 127.77 1.31 2.31 16 14 C 0.53 19.06 7.69 87.66 0.67 19.74 16 15 O -0.56 -25.36 15.44 -3.05 -0.05 -25.40 16 16 C -0.12 -4.86 4.71 71.23 0.34 -4.52 16 17 S -0.16 -8.63 20.57 -56.49 -1.16 -9.79 16 18 C -0.55 -31.00 9.50 67.96 0.65 -30.36 16 19 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 22 Si 1.00 43.45 29.55 68.60 2.03 45.48 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 N -0.54 -6.20 6.07 -176.11 -1.07 -7.27 16 27 H 0.44 1.30 8.32 -92.70 -0.77 0.53 16 28 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.11 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.88 6.48 -2.39 -0.02 1.87 16 34 H 0.41 3.56 7.72 -92.70 -0.72 2.84 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.62 7.42 -2.38 -0.02 1.60 16 38 H 0.13 1.01 7.89 -2.39 -0.02 0.99 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 1.19 6.44 -2.39 -0.02 1.17 16 41 H 0.11 0.78 7.89 -2.39 -0.02 0.76 16 42 H 0.11 3.87 7.40 -2.39 -0.02 3.85 16 43 H 0.11 3.79 8.11 -2.40 -0.02 3.77 16 44 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -91.39 389.31 0.81 -90.59 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -0.44 Total: 12.02 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 8.27 Total: 12.73 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -7.78 Total: -107.68 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.11 Total: -43.35 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.79 kcal Total: -91.39 0.81 -90.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688379412.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.395 kcal (2) G-P(sol) polarization free energy of solvation -91.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds