Wall clock time and date at job start Sat Apr 11 2020 05:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46889 * 35.00075 * 10 9 7 12 12 C 1.53007 * 109.47295 * 275.00250 * 10 9 7 13 13 C 1.52998 * 109.47100 * 155.00292 * 10 9 7 14 14 N 1.46496 * 109.46779 * 304.99960 * 13 10 9 15 15 C 1.34784 * 119.99832 * 180.02562 * 14 13 10 16 16 O 1.21280 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99723 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.46852 * 180.02562 * 17 15 14 19 19 C 1.76193 * 99.99938 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99868 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00007 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47296 * 89.99643 * 23 21 19 25 25 H 1.48500 * 109.46931 * 209.99887 * 23 21 19 26 26 H 1.48501 * 109.46908 * 329.99441 * 23 21 19 27 27 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 28 28 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 31 31 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 32 32 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 33 33 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 34 34 H 0.96995 * 119.99861 * 0.02562 * 9 7 6 35 35 H 1.08989 * 109.47048 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.47061 * 300.00235 * 12 10 9 37 37 H 1.09004 * 109.46583 * 59.99593 * 12 10 9 38 38 H 1.08996 * 109.47486 * 65.00005 * 13 10 9 39 39 H 1.08998 * 109.46846 * 185.00264 * 13 10 9 40 40 H 0.97001 * 120.00578 * 0.02562 * 14 13 10 41 41 H 1.09000 * 109.47152 * 299.99483 * 17 15 14 42 42 H 1.08998 * 109.47311 * 60.00305 * 17 15 14 43 43 H 0.96996 * 120.00185 * 180.02562 * 22 21 19 44 44 H 1.08003 * 126.13278 * 180.23755 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.6778 -1.4542 -2.4930 11 1 7.6217 -0.3793 -2.6651 12 6 7.2088 -2.1964 -3.7462 13 6 9.1231 -1.8458 -2.1793 14 7 9.5326 -1.2291 -0.9151 15 6 10.7754 -1.4356 -0.4360 16 8 11.5547 -2.1316 -1.0517 17 6 11.1964 -0.8016 0.8647 18 16 12.9069 -1.2636 1.2351 19 6 13.1303 -0.4115 2.7611 20 1 12.3224 0.1721 3.1770 21 6 14.3447 -0.4904 3.4286 22 7 14.5118 0.1466 4.5684 23 14 15.7424 -1.4993 2.7088 24 1 16.5680 -0.6399 1.8228 25 1 16.5863 -2.0314 3.8088 26 1 15.1839 -2.6286 1.9228 27 6 2.3032 -1.0942 0.0051 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9951 2.1578 -0.0008 32 1 5.3220 -1.3842 0.9333 33 1 4.4729 -2.5683 -0.0891 34 1 7.0825 -2.5250 -0.7589 35 1 7.8487 -1.9296 -4.5872 36 1 7.2648 -3.2713 -3.5741 37 1 6.1791 -1.9174 -3.9696 38 1 9.1956 -2.9301 -2.0948 39 1 9.7755 -1.4993 -2.9807 40 1 8.9094 -0.6721 -0.4228 41 1 11.1234 0.2827 0.7808 42 1 10.5442 -1.1489 1.6660 43 1 15.3606 0.0918 5.0347 44 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689406974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:32 Heat of formation + Delta-G solvation = 3.993173 kcal Electronic energy + Delta-G solvation = -25927.041899 eV Core-core repulsion = 22007.632231 eV Total energy + Delta-G solvation = -3919.409669 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.57426 -40.26009 -39.23862 -36.67917 -34.10051 -33.83691 -32.46758 -32.03145 -31.53457 -29.61915 -28.71148 -26.21463 -25.87792 -25.55458 -22.69259 -21.33202 -20.87052 -20.55547 -20.47607 -18.12369 -17.71037 -17.42835 -16.65554 -16.44408 -16.00646 -15.87017 -15.23339 -15.01001 -14.87791 -14.72618 -14.08459 -13.98842 -13.74938 -13.64848 -13.42972 -13.29667 -13.15414 -13.07729 -12.88345 -12.82178 -12.52574 -12.35837 -12.21683 -11.99607 -11.42718 -11.29678 -11.03721 -10.79256 -10.64791 -10.45540 -9.89684 -9.70170 -9.63231 -9.55309 -9.13858 -9.02514 -8.62050 -8.54617 -6.95926 -6.31627 -4.03992 1.54683 2.00228 2.11686 2.56682 2.64401 2.73582 2.88007 3.24659 3.31201 3.47239 3.59629 4.03263 4.14628 4.29894 4.30644 4.43653 4.55564 4.66055 4.71030 4.74332 4.85299 4.96845 5.07269 5.13378 5.18306 5.21159 5.27381 5.39666 5.48731 5.49433 5.59887 5.69392 5.70454 5.78078 5.84764 5.95825 5.98950 6.36981 6.37673 6.61589 6.97148 7.44307 7.47163 7.72394 7.91323 8.37612 8.39173 9.14256 10.77569 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002021 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.794802 B =13850.851745 C =15340.017488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.239 4.239 3 C 0.044 3.956 4 N -0.263 5.263 5 N -0.364 5.364 6 C 0.116 3.884 7 C 0.501 3.499 8 O -0.505 6.505 9 N -0.726 5.726 10 C 0.134 3.866 11 H 0.097 0.903 12 C -0.160 4.160 13 C 0.114 3.886 14 N -0.738 5.738 15 C 0.531 3.469 16 O -0.518 6.518 17 C -0.125 4.125 18 S -0.141 6.141 19 C -0.523 4.523 20 H 0.088 0.912 21 C 0.095 3.905 22 N -0.879 5.879 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.236 1.236 27 C 0.050 3.950 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.182 0.818 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.404 0.596 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.400 0.600 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.271 0.729 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.566 -6.020 -11.852 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.250 4.250 3 C -0.143 4.143 4 N -0.082 5.082 5 N -0.147 5.147 6 C -0.010 4.010 7 C 0.285 3.715 8 O -0.378 6.378 9 N -0.381 5.381 10 C 0.029 3.971 11 H 0.115 0.885 12 C -0.219 4.219 13 C -0.011 4.011 14 N -0.394 5.394 15 C 0.317 3.683 16 O -0.392 6.392 17 C -0.275 4.275 18 S 0.085 5.915 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.516 5.516 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.160 1.160 27 C -0.095 4.095 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.199 0.801 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.239 0.761 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.235 0.765 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -25.021 -6.212 -13.295 29.007 hybrid contribution -1.128 0.125 1.197 1.649 sum -26.149 -6.088 -12.098 29.448 Atomic orbital electron populations 1.20047 0.89278 1.02117 1.01518 1.20144 0.97079 0.91907 1.15894 1.23862 0.90015 0.99880 1.00564 1.77516 1.20944 0.87969 1.21807 1.47907 1.04246 1.04907 1.57626 1.21465 0.85604 0.94393 0.99557 1.20542 0.82022 0.82546 0.86390 1.90813 1.71863 1.29200 1.45961 1.46048 1.21513 1.39322 1.31218 1.21258 0.88042 1.01603 0.86198 0.88503 1.22101 1.02423 1.00592 0.96780 1.21622 0.93103 0.98902 0.87462 1.45968 1.15047 1.53899 1.24446 1.20304 0.80918 0.80460 0.86581 1.90709 1.51440 1.37638 1.59397 1.23280 1.03747 1.03963 0.96542 1.84780 1.08731 1.67688 1.30256 1.22311 1.03648 1.35398 1.05649 0.89373 1.24722 0.97942 0.94645 0.94024 1.69937 1.25715 1.41032 1.14895 0.86729 0.82770 0.82418 0.79882 1.19197 1.19918 1.15958 1.22278 0.83770 1.00056 1.03379 0.92161 0.91834 0.92222 0.80133 0.86485 0.85706 0.76110 0.90932 0.91940 0.91677 0.90778 0.89831 0.76527 0.88465 0.88480 0.91910 0.81091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.37 36.01 0.37 -0.02 16 2 C -0.24 -2.00 6.10 -105.05 -0.64 -2.64 16 3 C 0.04 0.45 11.96 -17.36 -0.21 0.24 16 4 N -0.26 -3.27 11.64 30.62 0.36 -2.91 16 5 N -0.36 -3.45 3.40 -62.54 -0.21 -3.66 16 6 C 0.12 0.70 6.99 -5.19 -0.04 0.66 16 7 C 0.50 4.33 7.82 -10.99 -0.09 4.24 16 8 O -0.51 -6.81 15.37 5.56 0.09 -6.73 16 9 N -0.73 -4.63 4.52 -53.80 -0.24 -4.87 16 10 C 0.13 1.02 2.73 -67.93 -0.19 0.83 16 11 H 0.10 0.93 7.58 -51.93 -0.39 0.53 16 12 C -0.16 -1.08 9.48 37.16 0.35 -0.73 16 13 C 0.11 1.05 5.23 -4.04 -0.02 1.02 16 14 N -0.74 -8.35 5.39 -60.30 -0.32 -8.67 16 15 C 0.53 8.80 7.85 -10.98 -0.09 8.71 16 16 O -0.52 -10.53 15.86 5.56 0.09 -10.45 16 17 C -0.12 -2.32 6.16 36.01 0.22 -2.10 16 18 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 19 C -0.52 -14.90 10.04 30.94 0.31 -14.59 16 20 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 21 C 0.10 2.77 5.50 -17.43 -0.10 2.67 16 22 N -0.88 -26.37 13.97 55.49 0.78 -25.60 16 23 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 24 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 25 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 27 C 0.05 0.38 11.36 -17.23 -0.20 0.19 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.18 1.35 8.06 -52.49 -0.42 0.92 16 32 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 0.26 8.07 -51.93 -0.42 -0.16 16 34 H 0.40 1.69 8.60 -40.82 -0.35 1.33 16 35 H 0.07 0.45 8.14 -51.94 -0.42 0.02 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.40 3.82 8.14 -40.82 -0.33 3.49 16 41 H 0.10 1.72 8.14 -51.92 -0.42 1.30 16 42 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 43 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.17 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 393.39 15.07 5.93 5.93 Total: -1.00 -39.20 393.39 -7.12 -46.32 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -6.57 Total: 0.77 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.30 Total: -1.50 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.35 Total: -45.71 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: 0.17 Total: -17.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.20 -7.12 -46.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689406974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.312 kcal (2) G-P(sol) polarization free energy of solvation -39.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds