Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21281 * 119.99661 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.46502 * 120.00128 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46889 * 35.00075 * 10 9 7 12 12 C 1.53007 * 109.47295 * 275.00250 * 10 9 7 13 13 C 1.52998 * 109.47100 * 155.00292 * 10 9 7 14 14 N 1.46496 * 109.46779 * 304.99960 * 13 10 9 15 15 C 1.34784 * 119.99832 * 180.02562 * 14 13 10 16 16 O 1.21280 * 119.99742 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99723 * 180.02562 * 15 14 13 18 18 S 1.81007 * 109.46852 * 180.02562 * 17 15 14 19 19 C 1.76193 * 99.99938 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00056 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99782 * 179.97438 * 19 18 17 22 22 N 1.31631 * 119.99868 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00007 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47296 * 89.99643 * 23 21 19 25 25 H 1.48500 * 109.46931 * 209.99887 * 23 21 19 26 26 H 1.48501 * 109.46908 * 329.99441 * 23 21 19 27 27 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 28 28 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 31 31 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 32 32 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 33 33 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 34 34 H 0.96995 * 119.99861 * 0.02562 * 9 7 6 35 35 H 1.08989 * 109.47048 * 180.02562 * 12 10 9 36 36 H 1.09004 * 109.47061 * 300.00235 * 12 10 9 37 37 H 1.09004 * 109.46583 * 59.99593 * 12 10 9 38 38 H 1.08996 * 109.47486 * 65.00005 * 13 10 9 39 39 H 1.08998 * 109.46846 * 185.00264 * 13 10 9 40 40 H 0.97001 * 120.00578 * 0.02562 * 14 13 10 41 41 H 1.09000 * 109.47152 * 299.99483 * 17 15 14 42 42 H 1.08998 * 109.47311 * 60.00305 * 17 15 14 43 43 H 0.96996 * 120.00185 * 180.02562 * 22 21 19 44 44 H 1.08003 * 126.13278 * 180.23755 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3283 -0.2654 -1.9162 9 7 6.8181 -1.8132 -1.3624 10 6 7.6778 -1.4542 -2.4930 11 1 7.6217 -0.3793 -2.6651 12 6 7.2088 -2.1964 -3.7462 13 6 9.1231 -1.8458 -2.1793 14 7 9.5326 -1.2291 -0.9151 15 6 10.7754 -1.4356 -0.4360 16 8 11.5547 -2.1316 -1.0517 17 6 11.1964 -0.8016 0.8647 18 16 12.9069 -1.2636 1.2351 19 6 13.1303 -0.4115 2.7611 20 1 12.3224 0.1721 3.1770 21 6 14.3447 -0.4904 3.4286 22 7 14.5118 0.1466 4.5684 23 14 15.7424 -1.4993 2.7088 24 1 16.5680 -0.6399 1.8228 25 1 16.5863 -2.0314 3.8088 26 1 15.1839 -2.6286 1.9228 27 6 2.3032 -1.0942 0.0051 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3633 -0.8898 0.5143 31 1 1.9951 2.1578 -0.0008 32 1 5.3220 -1.3842 0.9333 33 1 4.4729 -2.5683 -0.0891 34 1 7.0825 -2.5250 -0.7589 35 1 7.8487 -1.9296 -4.5872 36 1 7.2648 -3.2713 -3.5741 37 1 6.1791 -1.9174 -3.9696 38 1 9.1956 -2.9301 -2.0948 39 1 9.7755 -1.4993 -2.9807 40 1 8.9094 -0.6721 -0.4228 41 1 11.1234 0.2827 0.7808 42 1 10.5442 -1.1489 1.6660 43 1 15.3606 0.0918 5.0347 44 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689406974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -26.122094 kcal Electronic energy + Delta-G solvation = -25928.347795 eV Core-core repulsion = 22007.632231 eV Total energy + Delta-G solvation = -3920.715565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.18583 -41.08565 -40.37892 -37.54456 -34.90853 -34.67879 -34.64079 -32.67541 -32.25615 -30.92115 -29.24089 -27.90436 -26.94361 -26.43242 -23.37811 -22.02064 -21.79317 -21.47089 -21.11076 -19.91909 -18.51157 -18.16348 -17.80946 -17.41039 -17.12104 -16.93015 -16.56487 -16.37369 -15.80891 -15.51806 -15.40686 -14.99871 -14.80422 -14.64956 -14.31453 -14.21044 -13.96949 -13.90987 -13.77412 -13.48369 -13.36368 -13.31009 -13.03305 -13.01820 -12.99105 -12.67246 -12.63967 -12.10111 -11.86439 -11.44418 -11.17800 -11.17064 -11.06567 -10.54891 -10.34204 -10.26295 -10.18524 -9.20636 -9.00048 -8.52003 -6.22989 0.94859 0.98136 1.31653 1.45546 1.47997 1.50065 1.53247 1.55829 1.92362 2.07291 2.21855 2.25714 2.70304 2.86235 3.49778 3.58075 3.73967 3.83267 4.00108 4.03060 4.16904 4.19326 4.21659 4.23735 4.46022 4.51424 4.55430 4.62952 4.68410 4.72876 4.93721 4.94710 5.02278 5.18926 5.26977 5.32403 5.34792 5.39099 5.69920 5.75888 6.10963 6.11795 6.36201 6.44132 6.79295 6.92905 7.12460 7.14120 8.60393 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015158 B = 0.002021 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.794802 B =13850.851745 C =15340.017488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.256 4.256 3 C 0.027 3.973 4 N -0.319 5.319 5 N -0.372 5.372 6 C 0.110 3.890 7 C 0.502 3.498 8 O -0.560 6.560 9 N -0.712 5.712 10 C 0.144 3.856 11 H 0.077 0.923 12 C -0.154 4.154 13 C 0.117 3.883 14 N -0.713 5.713 15 C 0.539 3.461 16 O -0.557 6.557 17 C -0.114 4.114 18 S -0.171 6.171 19 C -0.531 4.531 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.917 5.917 23 Si 0.916 3.084 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.234 1.234 27 C 0.053 3.947 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.191 0.809 32 H 0.133 0.867 33 H 0.172 0.828 34 H 0.419 0.581 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.412 0.588 41 H 0.107 0.893 42 H 0.116 0.884 43 H 0.277 0.723 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.814 -8.286 -12.526 32.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.268 4.268 3 C -0.159 4.159 4 N -0.140 5.140 5 N -0.154 5.154 6 C -0.014 4.014 7 C 0.287 3.713 8 O -0.436 6.436 9 N -0.367 5.367 10 C 0.038 3.962 11 H 0.095 0.905 12 C -0.212 4.212 13 C -0.006 4.006 14 N -0.367 5.367 15 C 0.325 3.675 16 O -0.435 6.435 17 C -0.265 4.265 18 S 0.056 5.944 19 C -0.678 4.678 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.555 5.555 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.184 1.184 26 H -0.158 1.158 27 C -0.091 4.091 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.208 0.792 32 H 0.151 0.849 33 H 0.189 0.811 34 H 0.256 0.744 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.248 0.752 41 H 0.125 0.875 42 H 0.134 0.866 43 H 0.086 0.914 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -26.304 -8.487 -13.951 30.961 hybrid contribution -0.900 0.866 1.368 1.852 sum -27.203 -7.621 -12.583 30.927 Atomic orbital electron populations 1.20068 0.87508 1.03056 1.01897 1.20557 0.98479 0.91594 1.16142 1.24238 0.90125 1.01190 1.00366 1.77411 1.22294 0.90238 1.24035 1.48165 1.05718 1.04221 1.57344 1.21845 0.84704 0.96120 0.98723 1.21026 0.82301 0.81585 0.86382 1.90801 1.73141 1.31626 1.48065 1.45918 1.20694 1.39175 1.30909 1.21061 0.87285 1.00645 0.87159 0.90492 1.22038 1.01545 1.01343 0.96315 1.21744 0.93692 0.99320 0.85892 1.45726 1.13310 1.52881 1.24826 1.19851 0.82043 0.80029 0.85626 1.90704 1.52913 1.39641 1.60243 1.23284 0.99679 1.04850 0.98694 1.84656 1.14223 1.67505 1.28029 1.22474 1.03010 1.35155 1.07195 0.92114 1.25600 1.00413 0.95728 0.94398 1.70020 1.26776 1.42520 1.16207 0.85845 0.79852 0.81006 0.79523 1.18870 1.18361 1.15775 1.22966 0.82999 1.01675 1.01507 0.91982 0.91542 0.90670 0.79206 0.84919 0.81089 0.74378 0.90353 0.90325 0.93053 0.89605 0.90220 0.75167 0.87491 0.86572 0.91379 0.77160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.37 71.24 0.74 0.10 16 2 C -0.26 -4.03 6.10 -20.14 -0.12 -4.16 16 3 C 0.03 0.56 11.96 85.24 1.02 1.58 16 4 N -0.32 -8.05 11.64 -57.03 -0.66 -8.71 16 5 N -0.37 -6.51 3.40 -351.79 -1.20 -7.71 16 6 C 0.11 1.05 6.99 85.63 0.60 1.64 16 7 C 0.50 7.88 7.82 87.66 0.69 8.56 16 8 O -0.56 -15.07 15.37 -3.03 -0.05 -15.12 16 9 N -0.71 -7.36 4.52 -442.52 -2.00 -9.36 16 10 C 0.14 1.94 2.73 44.99 0.12 2.06 16 11 H 0.08 1.42 7.58 -2.39 -0.02 1.40 16 12 C -0.15 -1.78 9.48 71.98 0.68 -1.10 16 13 C 0.12 1.88 5.23 86.38 0.45 2.33 16 14 N -0.71 -14.46 5.39 -463.07 -2.50 -16.95 16 15 C 0.54 16.84 7.85 87.66 0.69 17.53 16 16 O -0.56 -21.86 15.86 -3.03 -0.05 -21.90 16 17 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 18 S -0.17 -8.38 18.55 -56.49 -1.05 -9.42 16 19 C -0.53 -30.55 10.04 67.96 0.68 -29.86 16 20 H 0.06 3.70 8.03 -2.91 -0.02 3.68 16 21 C 0.04 2.56 5.50 84.86 0.47 3.03 16 22 N -0.92 -55.60 13.97 21.65 0.30 -55.30 16 23 Si 0.92 44.42 27.74 68.60 1.90 46.33 16 24 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.23 -11.21 6.74 99.48 0.67 -10.54 16 27 C 0.05 0.70 11.36 83.54 0.95 1.65 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.19 3.05 8.06 -2.92 -0.02 3.02 16 32 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.17 -0.06 8.07 -2.38 -0.02 -0.08 16 34 H 0.42 2.03 8.60 -92.71 -0.80 1.23 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.41 6.81 8.14 -92.71 -0.75 6.06 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.12 3.73 8.14 -2.40 -0.02 3.71 16 43 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.21 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -88.02 393.39 1.55 -86.47 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -0.56 Total: 11.97 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: 7.40 Total: -0.29 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -6.05 Total: -98.03 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.09 Total: -37.02 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.33 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.42 kcal Total: -88.02 1.55 -86.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689406974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.343 kcal (2) G-P(sol) polarization free energy of solvation -88.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds