Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30445 * 125.98563 * 2 1 4 4 N 1.39936 * 108.89325 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.75142 * 179.97438 * 4 3 2 6 6 C 1.34260 * 108.49308 * 0.26603 * 4 3 2 7 7 C 1.38046 * 107.41659 * 359.58426 * 6 4 3 8 8 C 1.47419 * 126.41517 * 180.15976 * 7 6 4 9 9 O 1.21610 * 120.00085 * 180.29673 * 8 7 6 10 10 N 1.34780 * 120.00202 * 0.30167 * 8 7 6 11 11 C 1.46503 * 120.00143 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46984 * 34.99605 * 11 10 8 13 13 C 1.52995 * 109.46893 * 274.99684 * 11 10 8 14 14 C 1.53000 * 109.46751 * 154.99531 * 11 10 8 15 15 N 1.46497 * 109.47511 * 305.00004 * 14 11 10 16 16 C 1.34777 * 119.99758 * 180.02562 * 15 14 11 17 17 O 1.21276 * 120.00282 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99609 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.46722 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99712 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99656 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47439 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47206 * 119.99982 * 24 22 20 27 27 H 1.48509 * 109.46999 * 239.99399 * 24 22 20 28 28 H 1.09003 * 109.47108 * 89.97285 * 1 2 3 29 29 H 1.09001 * 109.46966 * 209.97482 * 1 2 3 30 30 H 1.08997 * 109.47069 * 329.97153 * 1 2 3 31 31 H 1.08999 * 109.46871 * 90.02801 * 5 4 3 32 32 H 1.08994 * 109.46947 * 210.02509 * 5 4 3 33 33 H 1.08997 * 109.47271 * 330.03025 * 5 4 3 34 34 H 1.08003 * 126.28916 * 179.72923 * 6 4 3 35 35 H 0.96997 * 119.99731 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47062 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.47241 * 299.99763 * 13 11 10 38 38 H 1.08996 * 109.47369 * 60.00460 * 13 11 10 39 39 H 1.08999 * 109.46870 * 65.00326 * 14 11 10 40 40 H 1.09006 * 109.46462 * 184.99726 * 14 11 10 41 41 H 0.96998 * 120.00071 * 359.97438 * 15 14 11 42 42 H 1.09000 * 109.46590 * 299.99360 * 18 16 15 43 43 H 1.08998 * 109.47035 * 59.99559 * 18 16 15 44 44 H 0.97002 * 119.99398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5291 -0.0013 6 6 3.6439 -0.6980 -0.0069 7 6 2.3373 -1.1433 -0.0007 8 6 1.8916 -2.5485 -0.0010 9 8 0.7039 -2.8097 -0.0006 10 7 2.8004 -3.5438 -0.0016 11 6 2.3575 -4.9402 -0.0024 12 1 1.4452 -5.0317 -0.5918 13 6 2.0836 -5.3892 1.4343 14 6 3.4495 -5.8211 -0.6127 15 7 3.7961 -5.3175 -1.9440 16 6 4.7412 -5.9409 -2.6752 17 8 5.3049 -6.9185 -2.2310 18 6 5.0982 -5.4224 -4.0445 19 16 6.3899 -6.4647 -4.7664 20 6 6.6069 -5.6539 -6.3157 21 1 6.0156 -4.7829 -6.5569 22 6 7.5370 -6.1353 -7.2266 23 7 8.2573 -7.1972 -6.9328 24 14 7.7676 -5.2753 -8.8688 25 1 6.8447 -4.1150 -8.9539 26 1 9.1703 -4.8025 -8.9873 27 1 7.4707 -6.2253 -9.9710 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 5.0691 1.7483 1.0262 32 1 5.6054 1.0393 -0.5158 33 1 4.5304 2.4580 -0.5147 34 1 4.5298 -1.3157 -0.0130 35 1 3.7478 -3.3354 -0.0022 36 1 1.7545 -6.4283 1.4338 37 1 2.9959 -5.2977 2.0237 38 1 1.3057 -4.7616 1.8690 39 1 4.3329 -5.7992 0.0255 40 1 3.0861 -6.8455 -0.6949 41 1 3.3450 -4.5358 -2.2994 42 1 4.2147 -5.4437 -4.6827 43 1 5.4621 -4.3983 -3.9618 44 1 8.9075 -7.5333 -7.5693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689408770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -5.128312 kcal Electronic energy + Delta-G solvation = -26366.579513 eV Core-core repulsion = 22446.774307 eV Total energy + Delta-G solvation = -3919.805206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78145 -39.87509 -38.96884 -36.43716 -34.33203 -33.69809 -32.45980 -32.03169 -30.28275 -29.68762 -29.34623 -26.35083 -25.96766 -25.39566 -23.24948 -21.71415 -20.55688 -20.38316 -20.05107 -18.25536 -17.75483 -16.67897 -16.44483 -16.27828 -16.14702 -15.66209 -15.09803 -14.94139 -14.83389 -14.66858 -14.10088 -14.03303 -13.76383 -13.62741 -13.40327 -13.09042 -12.91901 -12.90672 -12.83331 -12.57475 -12.48990 -12.30808 -12.16979 -11.82730 -11.28079 -11.19487 -11.09719 -11.05119 -10.78405 -10.04395 -9.84075 -9.72582 -9.51483 -9.39101 -9.11144 -8.98181 -8.97009 -8.27098 -6.53633 -6.25113 -3.95724 1.12269 1.85471 1.94896 2.86840 3.00735 3.06160 3.18993 3.20521 3.26207 3.30824 3.68018 3.95820 4.17215 4.17921 4.40060 4.53959 4.64893 4.81877 4.86253 4.93115 4.97661 5.02881 5.09192 5.10307 5.12066 5.35449 5.43206 5.46875 5.51150 5.62769 5.68722 5.72646 5.77503 5.84588 5.93916 6.10040 6.20754 6.23263 6.39085 6.52734 7.16514 7.32991 7.56781 7.62995 8.05268 8.32273 8.54546 9.20573 10.82345 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.002502 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.760469 B =11186.693810 C =12947.299064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.133 3.867 3 N -0.303 5.303 4 N -0.359 5.359 5 C 0.095 3.905 6 C 0.103 3.897 7 C -0.292 4.292 8 C 0.598 3.402 9 O -0.539 6.539 10 N -0.727 5.727 11 C 0.134 3.866 12 H 0.097 0.903 13 C -0.160 4.160 14 C 0.113 3.887 15 N -0.739 5.739 16 C 0.532 3.468 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.279 1.279 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.183 0.817 35 H 0.398 0.602 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.399 0.601 42 H 0.090 0.910 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.009 15.246 18.100 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.034 4.034 3 N -0.125 5.125 4 N -0.137 5.137 5 C -0.046 4.046 6 C -0.049 4.049 7 C -0.307 4.307 8 C 0.386 3.614 9 O -0.417 6.417 10 N -0.379 5.379 11 C 0.029 3.971 12 H 0.115 0.885 13 C -0.219 4.219 14 C -0.012 4.012 15 N -0.395 5.395 16 C 0.318 3.682 17 O -0.390 6.390 18 C -0.304 4.304 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.200 0.800 35 H 0.233 0.767 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.233 0.767 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.604 14.668 18.795 26.093 hybrid contribution 0.093 1.315 -1.768 2.206 sum -10.511 15.983 17.026 25.610 Atomic orbital electron populations 1.20353 0.85586 1.04000 1.03667 1.22489 0.97300 0.88687 0.94947 1.77229 0.85934 1.22654 1.26680 1.48332 1.06257 1.04796 1.54270 1.22046 0.83718 0.94858 1.03993 1.23138 0.98979 0.85419 0.97342 1.20216 0.92082 0.94417 1.24014 1.17214 0.85521 0.83425 0.75201 1.90750 1.16219 1.84203 1.50538 1.45957 1.09707 1.05751 1.76523 1.21225 0.98252 0.79878 0.97718 0.88479 1.22103 1.02451 1.02095 0.95245 1.21623 0.97503 0.98033 0.84022 1.46008 1.42063 1.33677 1.17738 1.20315 0.78376 0.83093 0.86423 1.90709 1.51257 1.25501 1.71555 1.23532 1.05993 1.05329 0.95571 1.85393 1.42913 1.37751 1.17271 1.22905 1.26336 1.16779 1.02300 0.90902 1.24996 0.94816 0.95048 0.98747 1.70030 1.22522 1.21860 1.35854 0.86118 0.78126 0.79270 0.81986 1.19623 1.20571 1.20531 0.90115 0.88581 0.91116 0.90103 0.88740 0.88744 0.79965 0.76716 0.91109 0.92130 0.91499 0.90975 0.89937 0.76664 0.89213 0.89343 0.92220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.92 36.01 0.36 -0.35 16 2 C 0.13 1.44 7.26 -82.02 -0.60 0.85 16 3 N -0.30 -3.32 12.50 33.90 0.42 -2.89 16 4 N -0.36 -2.93 3.98 -67.60 -0.27 -3.19 16 5 C 0.09 0.38 11.44 59.85 0.68 1.06 16 6 C 0.10 0.76 10.99 -16.56 -0.18 0.58 16 7 C -0.29 -2.88 6.13 -105.07 -0.64 -3.53 16 8 C 0.60 6.22 7.78 -12.52 -0.10 6.12 16 9 O -0.54 -7.13 14.58 5.27 0.08 -7.06 16 10 N -0.73 -5.83 4.51 -54.88 -0.25 -6.07 16 11 C 0.13 1.14 2.73 -67.93 -0.19 0.95 16 12 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 13 C -0.16 -1.20 9.48 37.15 0.35 -0.85 16 14 C 0.11 1.14 5.23 -4.04 -0.02 1.12 16 15 N -0.74 -9.01 5.39 -60.29 -0.32 -9.33 16 16 C 0.53 9.35 7.85 -10.98 -0.09 9.26 16 17 O -0.52 -11.14 15.86 5.56 0.09 -11.05 16 18 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 19 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 20 C -0.53 -15.01 9.50 30.94 0.29 -14.71 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.54 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 24 Si 0.92 21.16 29.55 -169.99 -5.02 16.13 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.95 6.55 -51.93 -0.34 0.61 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.18 0.67 7.46 -52.48 -0.39 0.27 16 35 H 0.40 2.48 7.52 -40.82 -0.31 2.17 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.40 4.15 8.14 -40.82 -0.33 3.82 16 42 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 43 H 0.09 1.57 8.14 -51.92 -0.42 1.14 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -37.82 392.52 -7.22 -45.04 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.38 Total: 1.72 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 0.00 Total: -0.31 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.32 Total: -46.60 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.17 Total: -18.11 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.82 -7.22 -45.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689408770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.911 kcal (2) G-P(sol) polarization free energy of solvation -37.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds