Wall clock time and date at job start Sat Apr 11 2020 05:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30445 * 125.98563 * 2 1 4 4 N 1.39936 * 108.89325 * 180.02562 * 3 2 1 5 5 C 1.46506 * 125.75142 * 179.97438 * 4 3 2 6 6 C 1.34260 * 108.49308 * 0.26603 * 4 3 2 7 7 C 1.38046 * 107.41659 * 359.58426 * 6 4 3 8 8 C 1.47419 * 126.41517 * 180.15976 * 7 6 4 9 9 O 1.21610 * 120.00085 * 180.29673 * 8 7 6 10 10 N 1.34780 * 120.00202 * 0.30167 * 8 7 6 11 11 C 1.46503 * 120.00143 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46984 * 34.99605 * 11 10 8 13 13 C 1.52995 * 109.46893 * 274.99684 * 11 10 8 14 14 C 1.53000 * 109.46751 * 154.99531 * 11 10 8 15 15 N 1.46497 * 109.47511 * 305.00004 * 14 11 10 16 16 C 1.34777 * 119.99758 * 180.02562 * 15 14 11 17 17 O 1.21276 * 120.00282 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99609 * 180.02562 * 16 15 14 19 19 S 1.80997 * 109.46722 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99712 * 180.02562 * 19 18 16 21 21 H 1.08005 * 119.99977 * 359.97438 * 20 19 18 22 22 C 1.38799 * 120.00200 * 180.02562 * 20 19 18 23 23 N 1.31635 * 119.99656 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00068 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47439 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47206 * 119.99982 * 24 22 20 27 27 H 1.48509 * 109.46999 * 239.99399 * 24 22 20 28 28 H 1.09003 * 109.47108 * 89.97285 * 1 2 3 29 29 H 1.09001 * 109.46966 * 209.97482 * 1 2 3 30 30 H 1.08997 * 109.47069 * 329.97153 * 1 2 3 31 31 H 1.08999 * 109.46871 * 90.02801 * 5 4 3 32 32 H 1.08994 * 109.46947 * 210.02509 * 5 4 3 33 33 H 1.08997 * 109.47271 * 330.03025 * 5 4 3 34 34 H 1.08003 * 126.28916 * 179.72923 * 6 4 3 35 35 H 0.96997 * 119.99731 * 359.97438 * 10 8 7 36 36 H 1.09003 * 109.47062 * 180.02562 * 13 11 10 37 37 H 1.08997 * 109.47241 * 299.99763 * 13 11 10 38 38 H 1.08996 * 109.47369 * 60.00460 * 13 11 10 39 39 H 1.08999 * 109.46870 * 65.00326 * 14 11 10 40 40 H 1.09006 * 109.46462 * 184.99726 * 14 11 10 41 41 H 0.96998 * 120.00071 * 359.97438 * 15 14 11 42 42 H 1.09000 * 109.46590 * 299.99360 * 18 16 15 43 43 H 1.08998 * 109.47035 * 59.99559 * 18 16 15 44 44 H 0.97002 * 119.99398 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 6 4.7787 1.5291 -0.0013 6 6 3.6439 -0.6980 -0.0069 7 6 2.3373 -1.1433 -0.0007 8 6 1.8916 -2.5485 -0.0010 9 8 0.7039 -2.8097 -0.0006 10 7 2.8004 -3.5438 -0.0016 11 6 2.3575 -4.9402 -0.0024 12 1 1.4452 -5.0317 -0.5918 13 6 2.0836 -5.3892 1.4343 14 6 3.4495 -5.8211 -0.6127 15 7 3.7961 -5.3175 -1.9440 16 6 4.7412 -5.9409 -2.6752 17 8 5.3049 -6.9185 -2.2310 18 6 5.0982 -5.4224 -4.0445 19 16 6.3899 -6.4647 -4.7664 20 6 6.6069 -5.6539 -6.3157 21 1 6.0156 -4.7829 -6.5569 22 6 7.5370 -6.1353 -7.2266 23 7 8.2573 -7.1972 -6.9328 24 14 7.7676 -5.2753 -8.8688 25 1 6.8447 -4.1150 -8.9539 26 1 9.1703 -4.8025 -8.9873 27 1 7.4707 -6.2253 -9.9710 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5143 31 1 5.0691 1.7483 1.0262 32 1 5.6054 1.0393 -0.5158 33 1 4.5304 2.4580 -0.5147 34 1 4.5298 -1.3157 -0.0130 35 1 3.7478 -3.3354 -0.0022 36 1 1.7545 -6.4283 1.4338 37 1 2.9959 -5.2977 2.0237 38 1 1.3057 -4.7616 1.8690 39 1 4.3329 -5.7992 0.0255 40 1 3.0861 -6.8455 -0.6949 41 1 3.3450 -4.5358 -2.2994 42 1 4.2147 -5.4437 -4.6827 43 1 5.4621 -4.3983 -3.9618 44 1 8.9075 -7.5333 -7.5693 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689408770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:33 Heat of formation + Delta-G solvation = -33.713577 kcal Electronic energy + Delta-G solvation = -26367.819063 eV Core-core repulsion = 22446.774307 eV Total energy + Delta-G solvation = -3921.044756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.43276 -40.87359 -40.09786 -37.37515 -34.98065 -34.73834 -34.56983 -32.85175 -31.15141 -30.57085 -30.26411 -27.72915 -26.95557 -26.67284 -23.93000 -22.41609 -21.71216 -21.27050 -20.76927 -19.83941 -18.79625 -17.74473 -17.49031 -17.29585 -16.87393 -16.76097 -16.62315 -16.28796 -15.85262 -15.61631 -15.38682 -14.82876 -14.74981 -14.53354 -14.34589 -14.22765 -14.03735 -13.77861 -13.54870 -13.38640 -13.21718 -13.14872 -13.02618 -12.97947 -12.90892 -12.85993 -12.58157 -12.01946 -11.89534 -11.69787 -11.15252 -10.96211 -10.86036 -10.38963 -10.25793 -10.19125 -10.11937 -9.62139 -8.64688 -8.34359 -6.11419 0.52339 1.10118 1.28088 1.41359 1.45417 1.47853 1.58623 1.63205 2.15341 2.27354 2.34979 2.46774 3.00044 3.33139 3.38565 3.60782 3.71735 3.98816 4.06569 4.11684 4.21522 4.30702 4.34570 4.40182 4.42169 4.45550 4.53421 4.63592 4.70453 4.75579 4.77409 4.82177 4.97606 4.99582 5.07068 5.28231 5.42646 5.43241 5.50182 5.54475 5.88591 6.20750 6.46311 6.49568 6.66072 7.07640 7.23636 7.31992 8.74915 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.010600 B = 0.002502 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2640.760469 B =11186.693810 C =12947.299064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.114 3.886 3 N -0.334 5.334 4 N -0.360 5.360 5 C 0.085 3.915 6 C 0.121 3.879 7 C -0.319 4.319 8 C 0.600 3.400 9 O -0.574 6.574 10 N -0.715 5.715 11 C 0.145 3.855 12 H 0.086 0.914 13 C -0.155 4.155 14 C 0.116 3.884 15 N -0.713 5.713 16 C 0.537 3.463 17 O -0.561 6.561 18 C -0.132 4.132 19 S -0.147 6.147 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.997 3.003 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.276 1.276 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.223 0.777 35 H 0.410 0.590 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.412 0.588 42 H 0.104 0.896 43 H 0.112 0.888 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.624 16.903 18.098 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 N -0.157 5.157 4 N -0.136 5.136 5 C -0.054 4.054 6 C -0.032 4.032 7 C -0.334 4.334 8 C 0.389 3.611 9 O -0.455 6.455 10 N -0.367 5.367 11 C 0.040 3.960 12 H 0.104 0.896 13 C -0.214 4.214 14 C -0.008 4.008 15 N -0.367 5.367 16 C 0.323 3.677 17 O -0.439 6.439 18 C -0.283 4.283 19 S 0.080 5.920 20 C -0.693 4.693 21 H 0.099 0.901 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.201 1.201 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.139 0.861 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.247 0.753 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.248 0.752 42 H 0.122 0.878 43 H 0.130 0.870 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.233 16.377 18.817 26.963 hybrid contribution -0.058 0.864 -1.653 1.866 sum -10.291 17.241 17.164 26.416 Atomic orbital electron populations 1.20301 0.85438 1.03849 1.03635 1.22743 0.97918 0.89323 0.95319 1.77155 0.87487 1.23267 1.27776 1.48696 1.06155 1.05684 1.53114 1.22407 0.82940 0.94663 1.05402 1.23686 0.99290 0.85424 0.94837 1.20267 0.93175 0.93850 1.26089 1.17312 0.85188 0.83953 0.74625 1.90734 1.17720 1.84696 1.52324 1.45810 1.10055 1.05123 1.75758 1.21079 0.97019 0.79774 0.98123 0.89602 1.22055 1.02637 1.02377 0.94323 1.21740 0.98239 0.98156 0.82637 1.45733 1.39974 1.33065 1.17931 1.19957 0.79054 0.82717 0.85976 1.90705 1.53312 1.27548 1.72304 1.23384 1.03715 1.04664 0.96531 1.85540 1.46785 1.41173 1.18467 1.23228 1.26527 1.16913 1.02608 0.90074 1.26091 0.94321 0.95696 1.02978 1.70184 1.23390 1.23660 1.37468 0.84935 0.78442 0.78287 0.76468 1.18157 1.19838 1.20118 0.90074 0.89663 0.90233 0.88620 0.86103 0.88868 0.76039 0.75341 0.90188 0.90973 0.92645 0.90146 0.90228 0.75166 0.87805 0.87026 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.92 71.24 0.71 -0.68 16 2 C 0.11 2.43 7.26 43.52 0.32 2.75 16 3 N -0.33 -7.06 12.50 -46.67 -0.58 -7.64 16 4 N -0.36 -5.08 3.98 -367.77 -1.46 -6.54 16 5 C 0.08 0.45 11.44 127.77 1.46 1.91 16 6 C 0.12 1.45 10.99 84.28 0.93 2.38 16 7 C -0.32 -5.87 6.13 -20.15 -0.12 -5.99 16 8 C 0.60 11.76 7.78 86.66 0.67 12.43 16 9 O -0.57 -15.11 14.58 -4.06 -0.06 -15.17 16 10 N -0.71 -9.82 4.51 -445.80 -2.01 -11.83 16 11 C 0.14 2.17 2.73 44.99 0.12 2.29 16 12 H 0.09 1.56 7.58 -2.39 -0.02 1.54 16 13 C -0.16 -2.04 9.48 71.98 0.68 -1.36 16 14 C 0.12 2.08 5.23 86.38 0.45 2.53 16 15 N -0.71 -15.61 5.39 -463.06 -2.49 -18.10 16 16 C 0.54 18.05 7.85 87.66 0.69 18.73 16 17 O -0.56 -23.97 15.86 -3.02 -0.05 -24.02 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -7.88 20.57 -56.49 -1.16 -9.04 16 20 C -0.54 -30.40 9.50 67.95 0.65 -29.75 16 21 H 0.08 4.22 7.80 -2.91 -0.02 4.20 16 22 C 0.01 0.78 5.49 84.86 0.47 1.25 16 23 N -0.91 -54.94 13.22 21.65 0.29 -54.65 16 24 Si 1.00 42.84 29.55 68.60 2.03 44.87 16 25 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 H -0.28 -11.58 7.11 99.48 0.71 -10.88 16 28 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.77 6.55 -2.39 -0.02 1.76 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.12 0.01 8.14 -2.39 -0.02 -0.01 16 33 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.22 0.62 7.46 -2.91 -0.02 0.59 16 35 H 0.41 3.73 7.52 -92.71 -0.70 3.03 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.57 8.14 -2.38 -0.02 1.56 16 41 H 0.41 7.29 8.14 -92.71 -0.75 6.53 16 42 H 0.10 3.60 8.14 -2.39 -0.02 3.58 16 43 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 44 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -84.67 392.52 1.54 -83.13 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.41 Total: 16.99 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 7.46 Total: 2.00 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -6.27 Total: -98.77 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.11 Total: -39.19 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -7.88 SS G_CDS: -1.16 Total: -9.04 kcal Total: -84.67 1.54 -83.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689408770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.420 kcal (2) G-P(sol) polarization free energy of solvation -84.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds