Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47257 * 299.99766 * 3 2 1 6 6 H 1.48498 * 109.47149 * 60.00518 * 3 2 1 7 7 C 1.38793 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00278 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00150 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00036 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99949 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47075 * 84.99839 * 14 13 11 16 16 C 1.52997 * 109.47317 * 59.99940 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 N 1.46901 * 109.46769 * 180.02562 * 17 16 15 19 19 C 1.46900 * 110.99890 * 204.99887 * 18 17 16 20 20 C 1.50698 * 109.47212 * 180.02562 * 19 18 17 21 21 C 1.40900 * 125.30240 * 94.71971 * 20 19 18 22 22 N 1.29953 * 109.38704 * 179.79977 * 21 20 19 23 23 O 1.41876 * 107.41662 * 0.44582 * 22 21 20 24 24 N 1.29954 * 125.30321 * 275.02227 * 20 19 18 25 25 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 17 16 27 27 H 0.97003 * 119.99634 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47225 * 59.99854 * 10 9 7 29 29 H 1.08997 * 109.46481 * 299.99784 * 10 9 7 30 30 H 0.97000 * 120.00195 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.47020 * 324.99485 * 14 13 11 32 32 H 1.08996 * 109.46929 * 299.99044 * 15 14 13 33 33 H 1.09002 * 109.46716 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 37 37 H 1.00898 * 111.00476 * 81.04496 * 18 17 16 38 38 H 1.09005 * 109.46934 * 299.99673 * 19 18 17 39 39 H 1.09002 * 109.47391 * 59.99776 * 19 18 17 40 40 H 1.07999 * 125.30973 * 359.97438 * 21 20 19 41 41 H 1.08993 * 109.47662 * 180.02562 * 25 17 16 42 42 H 1.09002 * 109.47075 * 300.00932 * 25 17 16 43 43 H 1.09002 * 109.47153 * 60.00231 * 26 25 17 44 44 H 1.09001 * 109.47289 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9871 -5.3027 -0.0030 12 8 0.7908 -5.5023 -0.0040 13 7 2.8438 -6.3432 -0.0024 14 6 2.3300 -7.7152 -0.0046 15 6 2.0359 -8.1473 -1.4425 16 6 3.3228 -8.0834 -2.2676 17 6 4.3671 -9.0202 -1.6570 18 7 5.6029 -8.9583 -2.4488 19 6 6.3834 -10.1943 -2.3039 20 6 7.6411 -10.0938 -3.1279 21 6 8.8973 -9.6728 -2.6484 22 7 9.7626 -9.7071 -3.6174 23 8 9.0806 -10.1497 -4.7801 24 7 7.7347 -10.3765 -4.3929 25 6 4.6613 -8.5880 -0.2190 26 6 3.3744 -8.6519 0.6060 27 1 -0.4850 0.8401 0.0004 28 1 3.1236 -3.7319 0.8891 29 1 3.1249 -3.7310 -0.8908 30 1 3.8006 -6.1837 -0.0013 31 1 1.4132 -7.7607 0.5832 32 1 1.2918 -7.4801 -1.8775 33 1 1.6540 -9.1683 -1.4442 34 1 3.7051 -7.0627 -2.2660 35 1 3.1133 -8.3918 -3.2919 36 1 3.9849 -10.0408 -1.6585 37 1 6.1537 -8.1513 -2.1971 38 1 6.6467 -10.3369 -1.2557 39 1 5.7899 -11.0414 -2.6479 40 1 9.1090 -9.3716 -1.6331 41 1 5.4055 -9.2549 0.2159 42 1 5.0435 -7.5671 -0.2175 43 1 2.9921 -9.6726 0.6044 44 1 3.5838 -8.3435 1.6303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690528284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = 47.268465 kcal Electronic energy + Delta-G solvation = -26313.458378 eV Core-core repulsion = 22395.925267 eV Total energy + Delta-G solvation = -3917.533111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90924 -40.26697 -38.44660 -36.27422 -34.04165 -33.24718 -32.45477 -32.39900 -31.13600 -29.94351 -28.31883 -26.18123 -25.48019 -23.94640 -23.00166 -22.10775 -21.63787 -21.04504 -19.31521 -17.94125 -17.74388 -16.77123 -16.62507 -16.40342 -15.85863 -15.48961 -15.38524 -15.27953 -14.81996 -14.64050 -14.48248 -14.06684 -13.99198 -13.77523 -13.32138 -13.20846 -12.74000 -12.70289 -12.49400 -12.31005 -12.27492 -12.16229 -11.99601 -11.70687 -11.51346 -11.39202 -11.08785 -11.04472 -11.03497 -10.77813 -10.75203 -10.51081 -9.81790 -9.39937 -9.10127 -9.07435 -8.85037 -8.24751 -6.51443 -6.23436 -3.93832 0.01431 1.41615 2.13869 2.62709 3.02557 3.08598 3.20276 3.26826 3.28110 3.31886 3.64235 3.72277 4.15299 4.18818 4.28177 4.33151 4.37108 4.57104 4.69021 4.77013 4.89519 4.95027 4.99352 5.06502 5.11912 5.13508 5.19045 5.20001 5.30340 5.49995 5.59137 5.63225 5.69876 5.84763 5.89669 5.98004 6.09474 6.10993 6.12319 6.36984 6.39838 6.66370 6.69933 7.58161 7.69740 8.33683 8.61226 9.22152 10.84007 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.002098 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.125197 B =13342.969295 C =14912.020599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.732 5.732 14 C 0.146 3.854 15 C -0.131 4.131 16 C -0.105 4.105 17 C 0.091 3.909 18 N -0.678 5.678 19 C 0.123 3.877 20 C 0.070 3.930 21 C 0.051 3.949 22 N -0.271 5.271 23 O 0.025 5.975 24 N -0.249 5.249 25 C -0.152 4.152 26 C -0.121 4.121 27 H 0.268 0.732 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.394 0.606 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.347 0.653 38 H 0.069 0.931 39 H 0.103 0.897 40 H 0.212 0.788 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.309 -23.957 0.183 28.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.387 5.387 14 C 0.040 3.960 15 C -0.170 4.170 16 C -0.143 4.143 17 C -0.018 4.018 18 N -0.310 5.310 19 C -0.007 4.007 20 C -0.113 4.113 21 C -0.152 4.152 22 N -0.014 5.014 23 O -0.118 6.118 24 N 0.008 4.992 25 C -0.191 4.191 26 C -0.160 4.160 27 H 0.078 0.922 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.229 0.771 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.166 0.834 38 H 0.087 0.913 39 H 0.121 0.879 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 13.420 -24.592 -1.749 28.070 hybrid contribution 2.603 1.669 1.669 3.514 sum 16.024 -22.923 -0.080 27.969 Atomic orbital electron populations 1.70031 1.05939 1.27345 1.46937 1.24996 0.95037 0.99049 0.94558 0.86118 0.79566 0.81898 0.77915 1.19641 1.20549 1.20574 1.22900 0.94905 0.91669 1.58827 0.90932 1.85403 1.04922 0.96328 1.96698 1.23530 1.06557 0.95622 1.04748 1.20294 0.86597 0.86285 0.74967 1.90701 1.15362 1.85569 1.47490 1.46113 1.09639 1.05271 1.77659 1.20865 0.97498 0.81175 0.96422 1.21933 0.97806 1.01850 0.95399 1.21450 0.93873 0.99597 0.99378 1.21687 0.89589 1.00710 0.89814 1.60541 1.07217 1.03367 1.59877 1.20571 0.88352 0.95797 0.95991 1.24635 0.97457 0.97074 0.92167 1.26113 0.89643 0.97323 1.02118 1.79946 1.18157 1.09757 0.93517 1.93444 1.14007 1.76456 1.27876 1.80019 0.95573 1.11840 1.11781 1.22299 0.98334 1.01914 0.96528 1.21745 0.94805 1.00098 0.99335 0.92235 0.89403 0.89367 0.77112 0.89319 0.90579 0.91248 0.91483 0.91128 0.89851 0.83446 0.91345 0.87908 0.77125 0.91723 0.91448 0.90393 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -15.05 9.50 30.94 0.29 -14.76 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.98 6.16 36.00 0.22 -2.76 16 11 C 0.53 9.28 7.81 -10.99 -0.09 9.20 16 12 O -0.52 -11.17 15.52 5.55 0.09 -11.08 16 13 N -0.73 -8.51 4.23 -53.80 -0.23 -8.74 16 14 C 0.15 1.41 2.78 -67.93 -0.19 1.22 16 15 C -0.13 -1.23 5.60 -26.73 -0.15 -1.38 16 16 C -0.10 -0.85 5.37 -26.73 -0.14 -0.99 16 17 C 0.09 0.47 2.47 -67.71 -0.17 0.31 16 18 N -0.68 -3.46 6.24 -107.99 -0.67 -4.13 16 19 C 0.12 0.44 6.03 -4.98 -0.03 0.41 16 20 C 0.07 0.41 6.70 -82.38 -0.55 -0.14 16 21 C 0.05 0.24 11.90 -17.34 -0.21 0.04 16 22 N -0.27 -2.34 12.98 30.70 0.40 -1.94 16 23 O 0.02 0.27 13.71 12.02 0.16 0.43 16 24 N -0.25 -2.37 12.98 33.74 0.44 -1.94 16 25 C -0.15 -0.65 5.00 -26.73 -0.13 -0.79 16 26 C -0.12 -0.72 5.61 -26.73 -0.15 -0.87 16 27 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.16 16 30 H 0.39 3.55 6.87 -40.82 -0.28 3.27 16 31 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.63 7.60 -51.93 -0.39 0.23 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.40 7.80 -51.93 -0.41 0.00 16 37 H 0.35 1.54 8.46 -39.29 -0.33 1.20 16 38 H 0.07 0.06 7.44 -51.93 -0.39 -0.33 16 39 H 0.10 0.40 8.06 -51.93 -0.42 -0.02 16 40 H 0.21 0.01 8.06 -52.49 -0.42 -0.41 16 41 H 0.06 0.18 7.45 -51.93 -0.39 -0.21 16 42 H 0.07 0.31 6.49 -51.93 -0.34 -0.03 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -36.27 379.67 -8.24 -44.51 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -6.26 Total: -1.47 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -1.39 Total: -8.54 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: 0.67 Total: -41.98 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.25 Total: -10.65 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.27 -8.24 -44.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690528284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.782 kcal (2) G-P(sol) polarization free energy of solvation -36.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds