Wall clock time and date at job start Sat Apr 11 2020 05:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86793 * 120.00091 * 2 1 4 4 H 1.48501 * 109.47100 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47257 * 299.99766 * 3 2 1 6 6 H 1.48498 * 109.47149 * 60.00518 * 3 2 1 7 7 C 1.38793 * 119.99508 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00278 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00317 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00150 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47095 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00036 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99949 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47075 * 84.99839 * 14 13 11 16 16 C 1.52997 * 109.47317 * 59.99940 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 N 1.46901 * 109.46769 * 180.02562 * 17 16 15 19 19 C 1.46900 * 110.99890 * 204.99887 * 18 17 16 20 20 C 1.50698 * 109.47212 * 180.02562 * 19 18 17 21 21 C 1.40900 * 125.30240 * 94.71971 * 20 19 18 22 22 N 1.29953 * 109.38704 * 179.79977 * 21 20 19 23 23 O 1.41876 * 107.41662 * 0.44582 * 22 21 20 24 24 N 1.29954 * 125.30321 * 275.02227 * 20 19 18 25 25 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 26 26 C 1.52997 * 109.46817 * 60.00194 * 25 17 16 27 27 H 0.97003 * 119.99634 * 359.97438 * 1 2 3 28 28 H 1.08990 * 109.47225 * 59.99854 * 10 9 7 29 29 H 1.08997 * 109.46481 * 299.99784 * 10 9 7 30 30 H 0.97000 * 120.00195 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.47020 * 324.99485 * 14 13 11 32 32 H 1.08996 * 109.46929 * 299.99044 * 15 14 13 33 33 H 1.09002 * 109.46716 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 37 37 H 1.00898 * 111.00476 * 81.04496 * 18 17 16 38 38 H 1.09005 * 109.46934 * 299.99673 * 19 18 17 39 39 H 1.09002 * 109.47391 * 59.99776 * 19 18 17 40 40 H 1.07999 * 125.30973 * 359.97438 * 21 20 19 41 41 H 1.08993 * 109.47662 * 180.02562 * 25 17 16 42 42 H 1.09002 * 109.47075 * 300.00932 * 25 17 16 43 43 H 1.09002 * 109.47153 * 60.00231 * 26 25 17 44 44 H 1.09001 * 109.47289 * 180.02562 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2020 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 16 1.1292 -2.7280 -0.0019 10 6 2.5157 -3.8915 -0.0013 11 6 1.9871 -5.3027 -0.0030 12 8 0.7908 -5.5023 -0.0040 13 7 2.8438 -6.3432 -0.0024 14 6 2.3300 -7.7152 -0.0046 15 6 2.0359 -8.1473 -1.4425 16 6 3.3228 -8.0834 -2.2676 17 6 4.3671 -9.0202 -1.6570 18 7 5.6029 -8.9583 -2.4488 19 6 6.3834 -10.1943 -2.3039 20 6 7.6411 -10.0938 -3.1279 21 6 8.8973 -9.6728 -2.6484 22 7 9.7626 -9.7071 -3.6174 23 8 9.0806 -10.1497 -4.7801 24 7 7.7347 -10.3765 -4.3929 25 6 4.6613 -8.5880 -0.2190 26 6 3.3744 -8.6519 0.6060 27 1 -0.4850 0.8401 0.0004 28 1 3.1236 -3.7319 0.8891 29 1 3.1249 -3.7310 -0.8908 30 1 3.8006 -6.1837 -0.0013 31 1 1.4132 -7.7607 0.5832 32 1 1.2918 -7.4801 -1.8775 33 1 1.6540 -9.1683 -1.4442 34 1 3.7051 -7.0627 -2.2660 35 1 3.1133 -8.3918 -3.2919 36 1 3.9849 -10.0408 -1.6585 37 1 6.1537 -8.1513 -2.1971 38 1 6.6467 -10.3369 -1.2557 39 1 5.7899 -11.0414 -2.6479 40 1 9.1090 -9.3716 -1.6331 41 1 5.4055 -9.2549 0.2159 42 1 5.0435 -7.5671 -0.2175 43 1 2.9921 -9.6726 0.6044 44 1 3.5838 -8.3435 1.6303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690528284.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:40 Heat of formation + Delta-G solvation = 18.865795 kcal Electronic energy + Delta-G solvation = -26314.690010 eV Core-core repulsion = 22395.925267 eV Total energy + Delta-G solvation = -3918.764743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.39049 -41.19634 -39.41560 -36.92991 -34.76536 -34.57852 -33.83226 -33.26306 -31.70710 -31.00579 -29.29736 -27.65910 -26.66580 -24.38015 -23.57509 -22.72935 -22.22183 -21.95738 -20.16108 -19.86385 -18.20458 -17.91836 -17.31803 -17.11750 -16.88167 -16.69349 -16.46504 -16.06181 -15.80536 -15.66314 -15.39478 -15.14693 -14.71424 -14.55618 -14.46994 -14.15659 -13.88308 -13.55213 -13.23107 -13.15600 -13.05807 -12.94652 -12.91575 -12.78906 -12.65965 -12.54284 -12.24908 -12.04815 -11.96649 -11.72162 -11.69999 -11.34370 -11.15828 -11.11747 -10.86996 -10.25762 -10.00764 -9.34381 -8.65731 -8.34678 -6.12218 -0.47171 1.04415 1.28501 1.41291 1.48420 1.57320 1.59125 1.67998 2.17731 2.26888 2.37383 2.89177 2.99584 3.28891 3.33879 3.77743 3.80963 3.91156 4.00395 4.08105 4.12416 4.20677 4.31412 4.34337 4.46347 4.51599 4.53299 4.59489 4.62553 4.68305 4.72397 4.75118 4.96724 5.11031 5.21026 5.26722 5.29474 5.38339 5.42229 5.46218 5.65952 5.89130 6.00835 6.20140 6.40356 6.58668 7.06906 7.33236 8.74698 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.002098 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.125197 B =13342.969295 C =14912.020599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.082 0.918 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.703 5.703 14 C 0.141 3.859 15 C -0.126 4.126 16 C -0.101 4.101 17 C 0.103 3.897 18 N -0.695 5.695 19 C 0.126 3.874 20 C 0.087 3.913 21 C 0.079 3.921 22 N -0.306 5.306 23 O -0.029 6.029 24 N -0.290 5.290 25 C -0.146 4.146 26 C -0.112 4.112 27 H 0.271 0.729 28 H 0.109 0.891 29 H 0.105 0.895 30 H 0.412 0.588 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.056 0.944 36 H 0.096 0.904 37 H 0.352 0.648 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.265 0.735 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.335 -25.025 2.177 31.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.357 5.357 14 C 0.037 3.963 15 C -0.165 4.165 16 C -0.140 4.140 17 C -0.006 4.006 18 N -0.328 5.328 19 C -0.004 4.004 20 C -0.097 4.097 21 C -0.124 4.124 22 N -0.052 5.052 23 O -0.161 6.161 24 N -0.037 5.037 25 C -0.185 4.185 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.250 0.750 31 H 0.080 0.920 32 H 0.051 0.949 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.172 0.828 38 H 0.131 0.869 39 H 0.120 0.880 40 H 0.280 0.720 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.525 -25.713 0.189 30.566 hybrid contribution 1.622 1.881 1.118 2.724 sum 18.148 -23.832 1.307 29.984 Atomic orbital electron populations 1.70197 1.07968 1.28495 1.48150 1.26134 0.95977 1.03353 0.93832 0.84905 0.78647 0.76364 0.78033 1.17954 1.20079 1.19913 1.23228 0.95307 0.92022 1.58608 0.89940 1.85595 1.10738 0.99280 1.97022 1.23375 1.03415 0.94788 1.06518 1.20023 0.86350 0.86694 0.75048 1.90690 1.17525 1.86074 1.50284 1.45868 1.09864 1.04981 1.75032 1.21077 0.98198 0.80523 0.96541 1.21857 0.97675 1.01880 0.95127 1.21384 0.94152 0.99733 0.98705 1.21505 0.88737 1.00307 0.90090 1.60381 1.07566 1.04288 1.60534 1.20770 0.86989 0.94879 0.97724 1.25202 0.98747 0.94550 0.91193 1.26945 0.88175 0.94084 1.03212 1.79917 1.19426 1.11960 0.93928 1.93421 1.14760 1.78165 1.29802 1.79986 0.95434 1.14186 1.14074 1.22294 0.97987 1.02910 0.95268 1.21716 0.94238 0.99687 0.99377 0.92044 0.87291 0.87626 0.75020 0.92001 0.94911 0.89248 0.92978 0.92490 0.88605 0.82816 0.86882 0.88043 0.71951 0.88281 0.91371 0.88389 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.92 13.22 21.65 0.29 -55.63 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.37 29.55 68.60 2.03 45.39 16 4 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 7 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 8 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.45 20.57 -56.49 -1.16 -9.61 16 10 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 11 C 0.53 18.66 7.81 87.66 0.68 19.34 16 12 O -0.57 -25.58 15.52 -3.06 -0.05 -25.63 16 13 N -0.70 -15.31 4.23 -442.51 -1.87 -17.19 16 14 C 0.14 2.54 2.78 44.99 0.13 2.66 16 15 C -0.13 -2.30 5.60 30.59 0.17 -2.13 16 16 C -0.10 -1.48 5.37 30.59 0.16 -1.32 16 17 C 0.10 0.66 2.47 44.92 0.11 0.77 16 18 N -0.70 -4.39 6.24 -495.57 -3.09 -7.48 16 19 C 0.13 0.32 6.03 85.56 0.52 0.84 16 20 C 0.09 0.78 6.70 43.49 0.29 1.07 16 21 C 0.08 0.48 11.90 85.62 1.02 1.50 16 22 N -0.31 -4.94 12.98 -56.80 -0.74 -5.68 16 23 O -0.03 -0.65 13.71 70.17 0.96 0.31 16 24 N -0.29 -5.41 12.98 -47.16 -0.61 -6.02 16 25 C -0.15 -0.47 5.00 30.59 0.15 -0.31 16 26 C -0.11 -0.86 5.61 30.60 0.17 -0.69 16 27 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 28 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 29 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 30 H 0.41 6.17 6.87 -92.71 -0.64 5.53 16 31 H 0.06 1.49 7.58 -2.39 -0.02 1.47 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 0.91 7.60 -2.39 -0.02 0.89 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.10 0.45 7.80 -2.39 -0.02 0.43 16 37 H 0.35 1.60 8.46 -89.70 -0.76 0.84 16 38 H 0.11 -0.63 7.44 -2.38 -0.02 -0.65 16 39 H 0.10 0.37 8.06 -2.39 -0.02 0.35 16 40 H 0.26 -1.60 8.06 -2.91 -0.02 -1.62 16 41 H 0.10 -0.22 7.45 -2.39 -0.02 -0.23 16 42 H 0.07 0.25 6.49 -2.39 -0.02 0.24 16 43 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -87.53 379.67 0.36 -87.18 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -0.35 Total: 6.21 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.96 Total: -11.84 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -6.03 Total: -92.01 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: 0.91 Total: -25.32 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.45 SS G_CDS: -1.16 Total: -9.61 kcal Total: -87.53 0.36 -87.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690528284.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.042 kcal (2) G-P(sol) polarization free energy of solvation -87.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds