Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09001 * 109.47884 * 324.99780 * 14 13 11 16 16 C 1.53008 * 109.47335 * 84.99977 * 14 13 11 17 17 C 1.52998 * 109.47363 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47164 * 300.00049 * 17 16 14 19 19 C 1.53005 * 109.47340 * 59.99924 * 18 17 16 20 20 H 1.09002 * 109.46899 * 59.99933 * 19 18 17 21 21 N 1.46891 * 109.47129 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99965 * 274.99971 * 21 19 18 23 23 C 1.50703 * 109.47132 * 180.02562 * 22 21 19 24 24 C 1.40895 * 125.30315 * 95.00035 * 23 22 21 25 25 N 1.29949 * 109.39395 * 179.97438 * 24 23 22 26 26 O 1.41883 * 107.41036 * 359.97438 * 25 24 23 27 27 N 1.29949 * 125.30344 * 274.68943 * 23 22 21 28 28 C 1.52998 * 109.46681 * 300.00106 * 19 18 17 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.08998 * 109.46811 * 299.99762 * 16 14 13 34 34 H 1.08994 * 109.47201 * 59.99659 * 16 14 13 35 35 H 1.09008 * 109.46993 * 59.99674 * 17 16 14 36 36 H 1.08994 * 109.47128 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47086 * 179.97438 * 18 17 16 38 38 H 1.08994 * 109.47018 * 299.99769 * 18 17 16 39 39 H 1.00898 * 111.00278 * 151.04568 * 21 19 18 40 40 H 1.08996 * 109.46883 * 299.99885 * 22 21 19 41 41 H 1.08997 * 109.47061 * 59.99790 * 22 21 19 42 42 H 1.08006 * 125.30636 * 359.97438 * 24 23 22 43 43 H 1.09002 * 109.47313 * 299.99574 * 28 19 18 44 44 H 1.09006 * 109.47016 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.4148 -7.7575 0.5992 16 6 2.0335 -8.1553 -1.4256 17 6 1.4975 -9.5883 -1.4189 18 6 2.5436 -10.5211 -0.8054 19 6 2.8405 -10.0810 0.6296 20 1 1.9250 -10.1237 1.2196 21 7 3.8453 -10.9763 1.2184 22 6 3.2142 -12.1763 1.7840 23 6 4.2736 -13.0684 2.3780 24 6 4.6612 -13.0817 3.7325 25 7 5.5966 -13.9671 3.9050 26 8 5.8500 -14.5680 2.6449 27 7 4.9680 -13.9493 1.7218 28 6 3.3765 -8.6480 0.6228 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 1.2886 -7.4904 -1.8628 34 1 2.9491 -8.1129 -2.0154 35 1 0.5820 -9.6310 -0.8288 36 1 1.2856 -9.9017 -2.4410 37 1 2.1615 -11.5420 -0.8002 38 1 3.4590 -10.4784 -1.3953 39 1 4.3952 -10.4950 1.9140 40 1 2.5086 -11.8835 2.5614 41 1 2.6853 -12.7139 0.9970 42 1 4.2456 -12.4539 4.5069 43 1 4.2921 -8.6053 0.0329 44 1 3.5885 -8.3345 1.6451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690762873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = 44.205432 kcal Electronic energy + Delta-G solvation = -25865.251372 eV Core-core repulsion = 21947.585438 eV Total energy + Delta-G solvation = -3917.665934 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.93668 -40.03859 -38.54335 -36.22616 -34.15439 -33.45203 -33.01417 -32.45308 -30.64277 -29.87157 -28.10964 -26.45132 -25.50472 -24.01124 -22.86229 -22.15629 -21.50320 -20.40844 -20.01542 -17.90693 -17.73448 -16.86714 -16.56059 -16.31806 -16.04990 -15.59320 -15.23416 -15.10756 -14.94077 -14.82551 -14.55395 -14.18279 -14.09669 -13.74213 -13.40474 -13.18907 -12.81637 -12.70046 -12.52744 -12.34482 -12.20556 -11.96598 -11.73781 -11.68467 -11.48920 -11.41808 -11.08626 -11.04954 -10.92006 -10.81701 -10.76578 -10.68476 -9.84029 -9.42106 -9.16559 -9.09489 -8.92619 -8.26754 -6.52865 -6.24279 -3.94954 -0.01695 1.38652 2.11015 2.60079 2.96215 3.04849 3.20373 3.22408 3.26916 3.30695 3.56745 3.69224 4.13726 4.18055 4.31962 4.41406 4.46316 4.59506 4.67799 4.83639 4.88222 4.96161 4.97003 5.04343 5.11000 5.13106 5.14508 5.23363 5.29632 5.53204 5.62215 5.68547 5.76515 5.84626 5.88943 5.91668 6.09985 6.12093 6.14593 6.32590 6.35517 6.61480 6.64926 7.57066 7.67321 8.32617 8.57697 9.21185 10.83111 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.001681 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.477008 B =16657.037053 C =17390.001771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.736 5.736 14 C 0.152 3.848 15 H 0.087 0.913 16 C -0.132 4.132 17 C -0.117 4.117 18 C -0.108 4.108 19 C 0.095 3.905 20 H 0.055 0.945 21 N -0.679 5.679 22 C 0.122 3.878 23 C 0.071 3.929 24 C 0.052 3.948 25 N -0.271 5.271 26 O 0.024 5.976 27 N -0.249 5.249 28 C -0.128 4.128 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.397 0.603 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.347 0.653 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.213 0.787 43 H 0.079 0.921 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.990 -25.508 4.186 27.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.391 6.391 13 N -0.389 5.389 14 C 0.046 3.954 15 H 0.105 0.895 16 C -0.171 4.171 17 C -0.155 4.155 18 C -0.146 4.146 19 C -0.014 4.014 20 H 0.073 0.927 21 N -0.312 5.312 22 C -0.008 4.008 23 C -0.112 4.112 24 C -0.152 4.152 25 N -0.014 5.014 26 O -0.118 6.118 27 N 0.007 4.993 28 C -0.166 4.166 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.231 0.769 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.166 0.834 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.229 0.771 43 H 0.097 0.903 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.938 -27.090 3.324 28.161 hybrid contribution 1.590 2.336 1.023 3.005 sum 8.527 -24.754 4.347 26.540 Atomic orbital electron populations 1.70017 1.05947 1.27470 1.46840 1.24991 0.95029 0.99031 0.94517 0.86169 0.79406 0.81564 0.78371 1.20257 1.20740 1.19705 1.22868 0.94909 0.91666 1.58988 0.90936 1.85382 1.04920 0.96334 1.96721 1.23542 1.06586 0.95464 1.04902 1.20308 0.86559 0.86276 0.74900 1.90698 1.15345 1.85569 1.47478 1.46066 1.09876 1.05213 1.77778 1.20770 0.97251 0.80728 0.96604 0.89468 1.21970 1.01902 0.96480 0.96766 1.21489 0.98351 0.94386 1.01298 1.21580 0.99705 0.98771 0.94588 1.21492 0.92987 0.90592 0.96371 0.92665 1.60446 1.25161 1.07706 1.37922 1.20605 0.90737 0.90123 0.99330 1.24615 0.98408 0.96643 0.91530 1.26132 0.94371 0.97328 0.97327 1.79950 1.12446 1.06800 1.02211 1.93442 1.52860 1.54939 1.10603 1.80013 1.00496 1.06156 1.12600 1.21964 0.99482 0.93347 1.01836 0.92174 0.89279 0.89239 0.76884 0.90868 0.91709 0.91697 0.91329 0.91976 0.90934 0.83433 0.91147 0.87753 0.77057 0.90259 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.33 7.81 -10.98 -0.09 9.24 16 12 O -0.52 -11.10 15.52 5.55 0.09 -11.01 16 13 N -0.74 -8.79 5.08 -53.80 -0.27 -9.06 16 14 C 0.15 1.52 2.46 -67.93 -0.17 1.35 16 15 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 16 C -0.13 -1.31 5.49 -26.73 -0.15 -1.45 16 17 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 18 C -0.11 -0.69 5.43 -26.73 -0.15 -0.83 16 19 C 0.10 0.52 2.49 -67.72 -0.17 0.35 16 20 H 0.06 0.29 7.80 -51.93 -0.41 -0.11 16 21 N -0.68 -3.22 6.30 -107.99 -0.68 -3.90 16 22 C 0.12 0.45 6.03 -4.97 -0.03 0.42 16 23 C 0.07 0.40 6.70 -82.38 -0.55 -0.15 16 24 C 0.05 0.23 11.90 -17.34 -0.21 0.03 16 25 N -0.27 -2.22 12.98 30.70 0.40 -1.83 16 26 O 0.02 0.25 13.71 12.02 0.16 0.41 16 27 N -0.25 -2.25 12.98 33.74 0.44 -1.81 16 28 C -0.13 -0.83 4.66 -26.73 -0.12 -0.95 16 29 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.09 1.59 8.14 -51.91 -0.42 1.17 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 32 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.36 7.45 -51.93 -0.39 -0.02 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.35 1.30 8.34 -39.29 -0.33 0.97 16 40 H 0.07 0.09 8.06 -51.93 -0.42 -0.32 16 41 H 0.10 0.42 7.43 -51.93 -0.39 0.04 16 42 H 0.21 -0.01 8.06 -52.48 -0.42 -0.44 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 LS Contribution 383.98 15.07 5.79 5.79 Total: -1.00 -35.87 383.98 -8.38 -44.26 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.44 Total: -1.44 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -1.36 Total: -8.59 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 0.62 Total: -41.70 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.25 Total: -10.60 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.87 -8.38 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690762873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.462 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds