Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 H 1.09001 * 109.47884 * 324.99780 * 14 13 11 16 16 C 1.53008 * 109.47335 * 84.99977 * 14 13 11 17 17 C 1.52998 * 109.47363 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47164 * 300.00049 * 17 16 14 19 19 C 1.53005 * 109.47340 * 59.99924 * 18 17 16 20 20 H 1.09002 * 109.46899 * 59.99933 * 19 18 17 21 21 N 1.46891 * 109.47129 * 180.02562 * 19 18 17 22 22 C 1.46906 * 110.99965 * 274.99971 * 21 19 18 23 23 C 1.50703 * 109.47132 * 180.02562 * 22 21 19 24 24 C 1.40895 * 125.30315 * 95.00035 * 23 22 21 25 25 N 1.29949 * 109.39395 * 179.97438 * 24 23 22 26 26 O 1.41883 * 107.41036 * 359.97438 * 25 24 23 27 27 N 1.29949 * 125.30344 * 274.68943 * 23 22 21 28 28 C 1.52998 * 109.46681 * 300.00106 * 19 18 17 29 29 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 30 30 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 31 31 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 32 32 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 33 33 H 1.08998 * 109.46811 * 299.99762 * 16 14 13 34 34 H 1.08994 * 109.47201 * 59.99659 * 16 14 13 35 35 H 1.09008 * 109.46993 * 59.99674 * 17 16 14 36 36 H 1.08994 * 109.47128 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.47086 * 179.97438 * 18 17 16 38 38 H 1.08994 * 109.47018 * 299.99769 * 18 17 16 39 39 H 1.00898 * 111.00278 * 151.04568 * 21 19 18 40 40 H 1.08996 * 109.46883 * 299.99885 * 22 21 19 41 41 H 1.08997 * 109.47061 * 59.99790 * 22 21 19 42 42 H 1.08006 * 125.30636 * 359.97438 * 24 23 22 43 43 H 1.09002 * 109.47313 * 299.99574 * 28 19 18 44 44 H 1.09006 * 109.47016 * 180.02562 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 6 2.3305 -7.7150 0.0094 15 1 1.4148 -7.7575 0.5992 16 6 2.0335 -8.1553 -1.4256 17 6 1.4975 -9.5883 -1.4189 18 6 2.5436 -10.5211 -0.8054 19 6 2.8405 -10.0810 0.6296 20 1 1.9250 -10.1237 1.2196 21 7 3.8453 -10.9763 1.2184 22 6 3.2142 -12.1763 1.7840 23 6 4.2736 -13.0684 2.3780 24 6 4.6612 -13.0817 3.7325 25 7 5.5966 -13.9671 3.9050 26 8 5.8500 -14.5680 2.6449 27 7 4.9680 -13.9493 1.7218 28 6 3.3765 -8.6480 0.6228 29 1 -0.4851 0.8400 0.0004 30 1 3.1252 -3.7317 0.8875 31 1 3.1238 -3.7309 -0.8925 32 1 3.8010 -6.1834 0.0019 33 1 1.2886 -7.4904 -1.8628 34 1 2.9491 -8.1129 -2.0154 35 1 0.5820 -9.6310 -0.8288 36 1 1.2856 -9.9017 -2.4410 37 1 2.1615 -11.5420 -0.8002 38 1 3.4590 -10.4784 -1.3953 39 1 4.3952 -10.4950 1.9140 40 1 2.5086 -11.8835 2.5614 41 1 2.6853 -12.7139 0.9970 42 1 4.2456 -12.4539 4.5069 43 1 4.2921 -8.6053 0.0329 44 1 3.5885 -8.3345 1.6451 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690762873.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = 16.277307 kcal Electronic energy + Delta-G solvation = -25866.462427 eV Core-core repulsion = 21947.585438 eV Total energy + Delta-G solvation = -3918.876989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40394 -41.03263 -39.47413 -36.86806 -35.04337 -34.57464 -34.05886 -33.56541 -31.68315 -30.60184 -29.20188 -27.63387 -26.91199 -24.45380 -23.51166 -22.93323 -21.94468 -21.47457 -20.79347 -19.78003 -18.20731 -17.77550 -17.62262 -16.96623 -16.87154 -16.77168 -16.37799 -16.07901 -15.89245 -15.69058 -15.56915 -15.14615 -14.84599 -14.65874 -14.55036 -14.12416 -13.93587 -13.72630 -13.31731 -13.16177 -13.14818 -12.88684 -12.82079 -12.65436 -12.58909 -12.28324 -12.25642 -12.12715 -12.00110 -11.73976 -11.51021 -11.46861 -11.43114 -11.13656 -10.82099 -10.26148 -10.03709 -9.48864 -8.65222 -8.34069 -6.11672 -0.48839 1.01960 1.28407 1.42786 1.48185 1.56220 1.58640 1.65326 2.16060 2.26355 2.31135 2.85770 3.00144 3.21755 3.33220 3.76364 3.83354 3.88497 3.91839 4.08326 4.11305 4.19947 4.30545 4.36447 4.42954 4.47507 4.52676 4.54072 4.55496 4.59582 4.66812 4.72655 4.94263 5.12134 5.14590 5.19709 5.30257 5.34187 5.42636 5.47607 5.60401 5.87370 5.92700 6.20456 6.36080 6.56371 7.07490 7.30002 8.75011 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.023653 B = 0.001681 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.477008 B =16657.037053 C =17390.001771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.997 3.003 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.131 4.131 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.151 3.849 15 H 0.068 0.932 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.103 4.103 19 C 0.103 3.897 20 H 0.064 0.936 21 N -0.686 5.686 22 C 0.123 3.877 23 C 0.089 3.911 24 C 0.078 3.922 25 N -0.304 5.304 26 O -0.026 6.026 27 N -0.285 5.285 28 C -0.117 4.117 29 H 0.271 0.729 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.415 0.585 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.356 0.644 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.262 0.738 43 H 0.087 0.913 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.710 -25.546 5.239 27.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.282 4.282 11 C 0.321 3.679 12 O -0.442 6.442 13 N -0.363 5.363 14 C 0.046 3.954 15 H 0.086 0.914 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.007 4.007 20 H 0.082 0.918 21 N -0.320 5.320 22 C -0.007 4.007 23 C -0.095 4.095 24 C -0.125 4.125 25 N -0.050 5.050 26 O -0.159 6.159 27 N -0.032 5.032 28 C -0.155 4.155 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.252 0.748 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.176 0.824 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.278 0.722 43 H 0.105 0.895 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.751 -27.210 4.363 28.914 hybrid contribution 1.013 2.295 0.689 2.601 sum 9.765 -24.916 5.052 27.234 Atomic orbital electron populations 1.70181 1.07939 1.28577 1.48032 1.26110 0.95953 1.03270 0.93777 0.84970 0.78239 0.76124 0.78755 1.19411 1.20317 1.18176 1.23212 0.95349 0.92097 1.58805 0.89951 1.85552 1.10598 0.99172 1.97041 1.23393 1.03511 0.94654 1.06686 1.20009 0.86299 0.86606 0.74949 1.90689 1.17376 1.86040 1.50112 1.45836 1.10173 1.04964 1.75329 1.20927 0.97849 0.79940 0.96703 0.91410 1.21921 1.01220 0.97199 0.96520 1.21441 0.98699 0.93187 1.01693 1.21523 0.98788 0.98763 0.95075 1.21350 0.93495 0.89871 0.95968 0.91798 1.60338 1.25140 1.07795 1.38756 1.20771 0.90299 0.89227 1.00378 1.25063 0.97289 0.95293 0.91876 1.26908 0.92161 0.95718 0.97747 1.79928 1.14715 1.08668 1.01707 1.93420 1.54290 1.56609 1.11569 1.79981 1.01792 1.07953 1.13481 1.21869 0.98251 0.92975 1.02391 0.92017 0.87200 0.87485 0.74790 0.94551 0.90903 0.91965 0.91151 0.91070 0.91501 0.82433 0.87589 0.88016 0.72221 0.89481 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 42.97 29.55 68.60 2.03 45.00 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.55 -30.75 9.50 67.95 0.65 -30.11 16 8 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 9 S -0.15 -8.20 20.57 -56.49 -1.16 -9.36 16 10 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 11 C 0.54 18.48 7.81 87.66 0.68 19.16 16 12 O -0.56 -24.84 15.52 -3.04 -0.05 -24.89 16 13 N -0.71 -15.65 5.08 -442.52 -2.25 -17.89 16 14 C 0.15 2.76 2.46 44.99 0.11 2.87 16 15 H 0.07 1.57 7.58 -2.39 -0.02 1.55 16 16 C -0.13 -2.47 5.49 30.60 0.17 -2.30 16 17 C -0.11 -1.57 5.92 30.59 0.18 -1.39 16 18 C -0.10 -1.05 5.43 30.60 0.17 -0.89 16 19 C 0.10 0.78 2.49 44.92 0.11 0.89 16 20 H 0.06 0.42 7.80 -2.39 -0.02 0.40 16 21 N -0.69 -3.94 6.30 -495.58 -3.12 -7.06 16 22 C 0.12 0.44 6.03 85.56 0.52 0.96 16 23 C 0.09 0.78 6.70 43.49 0.29 1.07 16 24 C 0.08 0.47 11.90 85.62 1.02 1.49 16 25 N -0.30 -4.69 12.98 -56.80 -0.74 -5.43 16 26 O -0.03 -0.54 13.71 70.16 0.96 0.42 16 27 N -0.29 -5.00 12.98 -47.16 -0.61 -5.61 16 28 C -0.12 -1.12 4.66 30.59 0.14 -0.98 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.11 3.71 8.14 -2.39 -0.02 3.69 16 31 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 32 H 0.42 6.35 8.60 -92.71 -0.80 5.55 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.64 7.45 -2.39 -0.02 0.62 16 38 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.36 1.13 8.34 -89.70 -0.75 0.38 16 40 H 0.11 -0.28 8.06 -2.39 -0.02 -0.30 16 41 H 0.10 0.50 7.43 -2.39 -0.02 0.48 16 42 H 0.26 -1.40 8.06 -2.91 -0.02 -1.42 16 43 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.08 0.63 8.12 -2.38 -0.02 0.61 16 Total: -1.00 -83.78 383.98 -0.22 -84.00 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -0.51 Total: 8.42 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 4.94 Total: -12.53 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -6.43 Total: -91.05 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.91 Total: -24.47 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -83.78 -0.22 -84.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690762873.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.276 kcal (2) G-P(sol) polarization free energy of solvation -83.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds