Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38622 * 120.44761 * 2 1 4 4 C 1.38580 * 118.40174 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.44980 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46722 * 94.99939 * 5 4 3 7 7 C 1.46900 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47407 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47269 * 305.00036 * 8 7 6 10 10 O 1.42903 * 109.46459 * 64.99929 * 8 7 6 11 11 C 1.53001 * 109.47376 * 184.99739 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.34783 * 119.99638 * 180.02562 * 12 11 8 14 14 O 1.21276 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46548 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99641 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99639 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46977 * 120.00200 * 21 19 17 24 24 H 1.48496 * 109.47103 * 240.00068 * 21 19 17 25 25 N 1.32350 * 119.10028 * 0.26544 * 4 3 2 26 26 C 1.31783 * 120.82163 * 359.45445 * 25 4 3 27 27 N 1.31809 * 121.75284 * 0.56520 * 26 25 4 28 28 H 1.09007 * 109.46742 * 90.00247 * 1 2 3 29 29 H 1.08998 * 109.47517 * 209.99891 * 1 2 3 30 30 H 1.09000 * 109.47409 * 330.00675 * 1 2 3 31 31 H 1.08003 * 120.80099 * 0.03312 * 3 2 1 32 32 H 1.08994 * 109.47000 * 334.99976 * 5 4 3 33 33 H 1.08992 * 109.47389 * 214.99482 * 5 4 3 34 34 H 1.00901 * 111.00196 * 303.94903 * 6 5 4 35 35 H 1.09005 * 109.47208 * 59.99899 * 7 6 5 36 36 H 1.08999 * 109.46786 * 299.99678 * 7 6 5 37 37 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 38 38 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 39 39 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 40 40 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 41 41 H 1.08998 * 109.47167 * 299.99565 * 15 13 12 42 42 H 1.09001 * 109.47098 * 60.00477 * 15 13 12 43 43 H 0.96996 * 120.00031 * 180.02562 * 20 19 17 44 44 H 1.08001 * 119.12184 * 180.26257 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1456 -0.0005 5 6 4.4040 2.4166 -0.0012 6 7 4.7693 2.7650 1.3784 7 6 5.5606 4.0020 1.4170 8 6 5.9209 4.3321 2.8669 9 1 5.0113 4.3792 3.4656 10 8 6.7813 3.3165 3.3868 11 6 6.6368 5.6833 2.9197 12 7 6.9822 5.9989 4.3079 13 6 7.6226 7.1488 4.5982 14 8 7.9133 7.9218 3.7102 15 6 7.9775 7.4737 6.0264 16 16 8.8245 9.0721 6.0887 17 6 9.1133 9.1978 7.8224 18 1 8.7848 8.4092 8.4832 19 6 9.7640 10.3098 8.3387 20 7 10.1649 11.2707 7.5333 21 14 10.0708 10.4427 10.1766 22 1 9.5275 9.2400 10.8573 23 1 11.5312 10.5367 10.4291 24 1 9.3981 11.6570 10.7041 25 7 4.1963 -0.0331 -0.0064 26 6 3.4956 -1.1492 -0.0009 27 7 2.1775 -1.1407 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6899 2.1419 0.0005 32 1 3.8134 3.2233 -0.4354 33 1 5.3089 2.2707 -0.5908 34 1 3.9492 2.8425 1.9611 35 1 4.9777 4.8196 0.9927 36 1 6.4736 3.8675 0.8370 37 1 7.6121 3.2184 2.9016 38 1 7.5464 5.6361 2.3210 39 1 5.9805 6.4579 2.5231 40 1 6.7494 5.3807 5.0182 41 1 7.0679 7.5205 6.6251 42 1 8.6341 6.6993 6.4228 43 1 10.6199 12.0476 7.8941 44 1 4.0152 -2.0960 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699037808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -44.034845 kcal Electronic energy + Delta-G solvation = -25001.117003 eV Core-core repulsion = 21079.624683 eV Total energy + Delta-G solvation = -3921.492320 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.55282 -39.47271 -38.21642 -36.39225 -34.69636 -34.08703 -33.16111 -32.42837 -30.75857 -29.47930 -28.72892 -26.77353 -25.48962 -24.67102 -23.97422 -22.26159 -21.75607 -20.30680 -18.22433 -17.93491 -17.39246 -16.78913 -16.63012 -16.28753 -15.99678 -15.80725 -15.44133 -15.36821 -14.84929 -14.80322 -14.78326 -14.32038 -13.89422 -13.73516 -13.54927 -13.29282 -13.12108 -13.04420 -12.90786 -12.58198 -12.52099 -12.32672 -11.75142 -11.35330 -11.32247 -11.06862 -11.01872 -10.90598 -10.76833 -10.38886 -10.05334 -9.80298 -9.69282 -9.42716 -9.08045 -9.00207 -8.91419 -8.23659 -6.50222 -6.21936 -3.92424 0.39650 0.53480 2.93220 3.07775 3.15637 3.21799 3.28400 3.32777 3.46926 3.54782 3.61238 3.76737 3.93242 4.17494 4.20462 4.37111 4.44197 4.47580 4.59974 4.64805 4.75660 4.81339 4.93538 4.96504 5.06135 5.12990 5.13531 5.17358 5.20211 5.24780 5.35657 5.50430 5.68378 5.76575 5.90179 5.90605 6.15268 6.27471 6.55620 6.57791 6.72828 7.39861 7.60173 7.64651 7.70364 8.35655 8.59251 9.23734 10.85589 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.001389 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.377088 B =20150.637121 C =20345.096660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.176 3.824 3 C -0.225 4.225 4 C 0.184 3.816 5 C 0.106 3.894 6 N -0.669 5.669 7 C 0.030 3.970 8 C 0.102 3.898 9 H 0.103 0.897 10 O -0.545 6.545 11 C 0.090 3.910 12 N -0.733 5.733 13 C 0.532 3.468 14 O -0.520 6.520 15 C -0.153 4.153 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 N -0.505 5.505 26 C 0.301 3.699 27 N -0.525 5.525 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.145 0.855 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.343 0.657 35 H 0.047 0.953 36 H 0.085 0.915 37 H 0.378 0.622 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.403 0.597 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.626 -23.047 -17.107 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.030 3.970 3 C -0.247 4.247 4 C 0.037 3.963 5 C -0.024 4.024 6 N -0.301 5.301 7 C -0.099 4.099 8 C 0.041 3.959 9 H 0.121 0.879 10 O -0.350 6.350 11 C -0.035 4.035 12 N -0.388 5.388 13 C 0.318 3.682 14 O -0.395 6.395 15 C -0.303 4.303 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 N -0.219 5.219 26 C 0.013 3.987 27 N -0.240 5.240 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.161 0.839 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.225 0.775 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.238 0.762 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -17.501 -22.915 -18.197 34.096 hybrid contribution -0.911 0.415 1.871 2.122 sum -18.412 -22.500 -16.326 33.344 Atomic orbital electron populations 1.20811 0.87731 1.04266 1.03772 1.21758 0.97706 0.88161 0.89387 1.22648 0.95730 1.00694 1.05673 1.21524 0.90884 0.94058 0.89804 1.20857 0.99135 0.90757 0.91614 1.60264 1.26057 1.35319 1.08424 1.22640 0.99196 0.90447 0.97667 1.22084 0.94009 0.86152 0.93610 0.87928 1.86608 1.33208 1.56667 1.58554 1.21897 1.00407 0.96392 0.84815 1.45851 1.61780 1.22660 1.08507 1.20335 0.76497 0.80281 0.91082 1.90697 1.52118 1.48037 1.48622 1.23525 1.04950 1.07045 0.94829 1.85377 1.72620 1.14932 1.10580 1.22919 1.44270 1.08843 0.92277 0.90837 1.24992 0.94794 0.94708 0.99076 1.70028 1.36993 1.08367 1.34949 0.86113 0.78118 0.78218 0.83030 1.19597 1.20558 1.20573 1.68266 1.41815 0.98584 1.13249 1.25042 0.86589 0.96993 0.90065 1.68283 1.10577 1.30439 1.14722 0.89594 0.89764 0.90010 0.83729 0.92860 0.88454 0.83918 0.93530 0.89695 0.77478 0.91201 0.90857 0.76228 0.89210 0.89116 0.92244 0.78591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.22 36.00 0.37 -0.02 16 2 C 0.18 1.18 6.82 -82.24 -0.56 0.62 16 3 C -0.22 -1.34 9.52 -39.31 -0.37 -1.72 16 4 C 0.18 1.37 6.34 -82.24 -0.52 0.85 16 5 C 0.11 0.62 6.04 -4.98 -0.03 0.59 16 6 N -0.67 -4.40 6.44 -115.06 -0.74 -5.14 16 7 C 0.03 0.18 5.32 -3.82 -0.02 0.16 16 8 C 0.10 0.76 3.23 -26.73 -0.09 0.67 16 9 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 10 O -0.55 -4.88 13.03 -35.23 -0.46 -5.34 16 11 C 0.09 0.92 5.34 -4.04 -0.02 0.90 16 12 N -0.73 -9.51 5.45 -60.30 -0.33 -9.84 16 13 C 0.53 9.81 7.85 -10.98 -0.09 9.72 16 14 O -0.52 -11.65 15.86 5.56 0.09 -11.56 16 15 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.28 9.50 30.94 0.29 -14.99 16 18 H 0.07 2.00 7.80 -52.49 -0.41 1.59 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 21 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 N -0.50 -4.61 10.38 -10.80 -0.11 -4.72 16 26 C 0.30 2.43 12.29 -92.15 -1.13 1.30 16 27 N -0.52 -4.42 10.38 -10.79 -0.11 -4.53 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.08 0.16 8.10 -51.93 -0.42 -0.26 16 31 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 32 H 0.05 0.22 8.06 -51.93 -0.42 -0.20 16 33 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.34 2.09 8.72 -39.29 -0.34 1.74 16 35 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.38 2.56 9.05 45.56 0.41 2.97 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.40 4.46 8.35 -40.82 -0.34 4.12 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.20 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -37.62 396.24 -9.97 -47.59 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.73 Total: 3.26 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: -2.05 Total: -2.78 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.56 Total: -49.68 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.37 Total: -16.90 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.62 -9.97 -47.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699037808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.557 kcal (2) G-P(sol) polarization free energy of solvation -37.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds