Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38622 * 120.44761 * 2 1 4 4 C 1.38580 * 118.40174 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.44980 * 179.97438 * 4 3 2 6 6 N 1.46902 * 109.46722 * 94.99939 * 5 4 3 7 7 C 1.46900 * 110.99888 * 180.02562 * 6 5 4 8 8 C 1.53003 * 109.47407 * 179.97438 * 7 6 5 9 9 H 1.08999 * 109.47269 * 305.00036 * 8 7 6 10 10 O 1.42903 * 109.46459 * 64.99929 * 8 7 6 11 11 C 1.53001 * 109.47376 * 184.99739 * 8 7 6 12 12 N 1.46497 * 109.46900 * 180.02562 * 11 8 7 13 13 C 1.34783 * 119.99638 * 180.02562 * 12 11 8 14 14 O 1.21276 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.50704 * 119.99567 * 179.97438 * 13 12 11 16 16 S 1.81003 * 109.46548 * 179.97438 * 15 13 12 17 17 C 1.76208 * 99.99641 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99843 * 0.02562 * 17 16 15 19 19 C 1.38797 * 119.99639 * 179.97438 * 17 16 15 20 20 N 1.31632 * 120.00457 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99706 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46881 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46977 * 120.00200 * 21 19 17 24 24 H 1.48496 * 109.47103 * 240.00068 * 21 19 17 25 25 N 1.32350 * 119.10028 * 0.26544 * 4 3 2 26 26 C 1.31783 * 120.82163 * 359.45445 * 25 4 3 27 27 N 1.31809 * 121.75284 * 0.56520 * 26 25 4 28 28 H 1.09007 * 109.46742 * 90.00247 * 1 2 3 29 29 H 1.08998 * 109.47517 * 209.99891 * 1 2 3 30 30 H 1.09000 * 109.47409 * 330.00675 * 1 2 3 31 31 H 1.08003 * 120.80099 * 0.03312 * 3 2 1 32 32 H 1.08994 * 109.47000 * 334.99976 * 5 4 3 33 33 H 1.08992 * 109.47389 * 214.99482 * 5 4 3 34 34 H 1.00901 * 111.00196 * 303.94903 * 6 5 4 35 35 H 1.09005 * 109.47208 * 59.99899 * 7 6 5 36 36 H 1.08999 * 109.46786 * 299.99678 * 7 6 5 37 37 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 38 38 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 39 39 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 40 40 H 0.96996 * 120.00310 * 359.97438 * 12 11 8 41 41 H 1.08998 * 109.47167 * 299.99565 * 15 13 12 42 42 H 1.09001 * 109.47098 * 60.00477 * 15 13 12 43 43 H 0.96996 * 120.00031 * 180.02562 * 20 19 17 44 44 H 1.08001 * 119.12184 * 180.26257 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1950 0.0000 4 6 3.5944 1.1456 -0.0005 5 6 4.4040 2.4166 -0.0012 6 7 4.7693 2.7650 1.3784 7 6 5.5606 4.0020 1.4170 8 6 5.9209 4.3321 2.8669 9 1 5.0113 4.3792 3.4656 10 8 6.7813 3.3165 3.3868 11 6 6.6368 5.6833 2.9197 12 7 6.9822 5.9989 4.3079 13 6 7.6226 7.1488 4.5982 14 8 7.9133 7.9218 3.7102 15 6 7.9775 7.4737 6.0264 16 16 8.8245 9.0721 6.0887 17 6 9.1133 9.1978 7.8224 18 1 8.7848 8.4092 8.4832 19 6 9.7640 10.3098 8.3387 20 7 10.1649 11.2707 7.5333 21 14 10.0708 10.4427 10.1766 22 1 9.5275 9.2400 10.8573 23 1 11.5312 10.5367 10.4291 24 1 9.3981 11.6570 10.7041 25 7 4.1963 -0.0331 -0.0064 26 6 3.4956 -1.1492 -0.0009 27 7 2.1775 -1.1407 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6899 2.1419 0.0005 32 1 3.8134 3.2233 -0.4354 33 1 5.3089 2.2707 -0.5908 34 1 3.9492 2.8425 1.9611 35 1 4.9777 4.8196 0.9927 36 1 6.4736 3.8675 0.8370 37 1 7.6121 3.2184 2.9016 38 1 7.5464 5.6361 2.3210 39 1 5.9805 6.4579 2.5231 40 1 6.7494 5.3807 5.0182 41 1 7.0679 7.5205 6.6251 42 1 8.6341 6.6993 6.4228 43 1 10.6199 12.0476 7.8941 44 1 4.0152 -2.0960 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699037808.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -75.346443 kcal Electronic energy + Delta-G solvation = -25002.474776 eV Core-core repulsion = 21079.624683 eV Total energy + Delta-G solvation = -3922.850093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.04556 -40.71787 -39.04661 -36.96762 -35.29328 -35.13629 -34.58348 -33.66019 -31.81218 -30.37803 -29.39572 -27.75294 -27.32999 -25.25566 -24.59544 -22.85552 -22.28412 -21.66567 -19.85536 -18.74164 -18.13791 -17.85651 -17.40509 -17.27752 -16.88232 -16.56673 -16.44903 -16.32825 -16.22650 -15.76208 -15.66152 -15.41151 -14.95362 -14.60999 -14.38439 -14.16907 -14.01276 -13.95224 -13.70560 -13.38931 -13.21224 -13.15939 -12.97952 -12.90720 -12.78822 -12.59949 -11.96642 -11.81978 -11.72310 -11.44571 -11.17674 -11.15796 -10.85393 -10.50562 -10.27899 -10.22607 -10.13329 -9.42191 -8.66563 -8.34989 -6.12886 -0.09377 0.03880 1.27208 1.41526 1.47134 1.58568 1.60945 2.21899 2.27958 2.65758 2.99370 3.00299 3.13668 3.20053 3.32245 3.44725 3.57680 3.81726 3.90276 4.00936 4.06836 4.08825 4.12094 4.28228 4.31511 4.44282 4.48580 4.51920 4.62033 4.65764 4.71207 4.72834 4.74556 4.86177 5.07599 5.08312 5.40339 5.42403 5.47251 5.84540 6.08134 6.20114 6.29697 6.48893 6.84130 7.06705 7.13144 7.23697 8.74508 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.031653 B = 0.001389 C = 0.001376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.377088 B =20150.637121 C =20345.096660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 C -0.220 4.220 4 C 0.169 3.831 5 C 0.110 3.890 6 N -0.681 5.681 7 C 0.037 3.963 8 C 0.116 3.884 9 H 0.111 0.889 10 O -0.561 6.561 11 C 0.089 3.911 12 N -0.708 5.708 13 C 0.534 3.466 14 O -0.566 6.566 15 C -0.131 4.131 16 S -0.150 6.150 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.015 3.985 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.273 1.273 25 N -0.533 5.533 26 C 0.287 3.713 27 N -0.547 5.547 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.174 0.826 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.346 0.654 35 H 0.061 0.939 36 H 0.086 0.914 37 H 0.386 0.614 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.416 0.584 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.271 0.729 44 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.244 -24.080 -16.321 35.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.017 3.983 3 C -0.242 4.242 4 C 0.023 3.977 5 C -0.019 4.019 6 N -0.313 5.313 7 C -0.092 4.092 8 C 0.056 3.944 9 H 0.128 0.872 10 O -0.367 6.367 11 C -0.036 4.036 12 N -0.362 5.362 13 C 0.320 3.680 14 O -0.445 6.445 15 C -0.282 4.282 16 S 0.077 5.923 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.190 4.190 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.199 1.199 25 N -0.248 5.248 26 C 0.000 4.000 27 N -0.263 5.263 28 H 0.115 0.885 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.192 0.808 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.165 0.835 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.235 0.765 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.253 0.747 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -19.149 -24.003 -17.417 35.302 hybrid contribution -0.486 0.624 1.540 1.731 sum -19.635 -23.379 -15.877 34.412 Atomic orbital electron populations 1.20901 0.85660 1.05050 1.04677 1.22341 0.99177 0.88082 0.88725 1.22934 0.95195 1.01694 1.04374 1.21867 0.91874 0.94058 0.89869 1.20847 0.98999 0.90796 0.91223 1.60203 1.26481 1.35619 1.08987 1.22536 0.99498 0.90787 0.96415 1.21983 0.93478 0.84086 0.94869 0.87174 1.86587 1.33971 1.56887 1.59284 1.22107 1.00673 0.98098 0.82684 1.45618 1.59411 1.20725 1.10407 1.20022 0.76928 0.81348 0.89737 1.90687 1.54469 1.49924 1.49395 1.23378 1.05076 1.02824 0.96928 1.85524 1.74434 1.20850 1.11459 1.23250 1.44461 1.09390 0.92407 0.89991 1.26110 0.94202 0.94103 1.04606 1.70184 1.37908 1.09152 1.37506 0.84909 0.78159 0.78740 0.76160 1.18125 1.19926 1.19856 1.68273 1.42697 0.99447 1.14406 1.25395 0.86871 0.97570 0.90207 1.68329 1.10778 1.31570 1.15584 0.88488 0.90248 0.87944 0.80819 0.90515 0.89343 0.83543 0.92071 0.89607 0.76496 0.91493 0.90753 0.74696 0.87295 0.87448 0.91970 0.77104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 10.22 71.24 0.73 0.16 16 2 C 0.16 1.98 6.82 42.58 0.29 2.27 16 3 C -0.22 -2.20 9.52 22.44 0.21 -1.99 16 4 C 0.17 2.32 6.34 42.56 0.27 2.59 16 5 C 0.11 1.10 6.04 85.56 0.52 1.62 16 6 N -0.68 -7.54 6.44 -517.94 -3.34 -10.88 16 7 C 0.04 0.35 5.32 86.30 0.46 0.81 16 8 C 0.12 1.45 3.23 30.60 0.10 1.55 16 9 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 10 O -0.56 -8.86 13.03 -148.98 -1.94 -10.80 16 11 C 0.09 1.65 5.34 86.38 0.46 2.11 16 12 N -0.71 -17.00 5.45 -463.06 -2.52 -19.53 16 13 C 0.53 19.26 7.85 87.66 0.69 19.95 16 14 O -0.57 -25.58 15.86 -3.02 -0.05 -25.62 16 15 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 16 S -0.15 -8.31 20.57 -56.49 -1.16 -9.47 16 17 C -0.55 -31.34 9.50 67.95 0.65 -30.69 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.83 5.49 84.86 0.47 1.30 16 20 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 21 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 N -0.53 -9.61 10.38 -188.08 -1.95 -11.56 16 26 C 0.29 4.67 12.29 180.88 2.22 6.89 16 27 N -0.55 -9.03 10.38 -188.07 -1.95 -10.98 16 28 H 0.10 0.31 8.14 -2.38 -0.02 0.29 16 29 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.10 0.11 8.10 -2.39 -0.02 0.09 16 31 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 32 H 0.08 0.40 8.06 -2.39 -0.02 0.38 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.35 3.39 8.72 -89.69 -0.78 2.61 16 35 H 0.06 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 37 H 0.39 4.56 9.05 -74.06 -0.67 3.89 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.42 8.07 8.35 -92.71 -0.77 7.29 16 41 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 42 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 43 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 44 H 0.21 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -83.53 396.24 -4.28 -87.81 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -1.18 Total: 19.15 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 7.50 Total: 1.82 kcal Atomic # 7 Polarization: -99.07 SS G_CDS: -9.47 Total: -108.54 kcal Atomic # 8 Polarization: -34.43 SS G_CDS: -1.99 Total: -36.42 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.16 Total: -9.47 kcal Total: -83.53 -4.28 -87.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699037808.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.464 kcal (2) G-P(sol) polarization free energy of solvation -83.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds